Mutagenetix > Incidental Mutation

Incidental Mutation 'R3946:Trp53bp1'

307690

Institutional Source

Beutler Lab

Gene Symbol

Trp53bp1

Ensembl Gene

ENSMUSG00000043909

Gene Name

transformation related protein 53 binding protein 1

Synonyms

53BP1, p53BP1

MMRRC Submission

040827-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R3946 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

121193281-121271407 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 121228626 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Leucine at position 918 (H918L)

Ref Sequence

ENSEMBL: ENSMUSP00000106277 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000110647] [ENSMUST00000110648] [ENSMUST00000131245]

AlphaFold

P70399

Predicted Effect

probably damaging
Transcript: ENSMUST00000110647
AA Change: H918L

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000106277
Gene: ENSMUSG00000043909
AA Change: H918L

Domain	Start	End	E-Value	Type
low complexity region	136	149	N/A	INTRINSIC
low complexity region	158	169	N/A	INTRINSIC
low complexity region	647	661	N/A	INTRINSIC
low complexity region	1031	1042	N/A	INTRINSIC
low complexity region	1099	1112	N/A	INTRINSIC
low complexity region	1260	1272	N/A	INTRINSIC
low complexity region	1290	1332	N/A	INTRINSIC
Pfam:53-BP1_Tudor	1430	1551	2.5e-80	PFAM
low complexity region	1581	1601	N/A	INTRINSIC
BRCT	1673	1785	7.13e-1	SMART
BRCT	1813	1901	1.03e-6	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000110648
AA Change: H918L

PolyPhen 2 Score 0.659 (Sensitivity: 0.86; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000106278
Gene: ENSMUSG00000043909
AA Change: H918L

Domain	Start	End	E-Value	Type
low complexity region	136	149	N/A	INTRINSIC
low complexity region	158	169	N/A	INTRINSIC
low complexity region	647	661	N/A	INTRINSIC
low complexity region	1031	1042	N/A	INTRINSIC
low complexity region	1099	1112	N/A	INTRINSIC
low complexity region	1260	1272	N/A	INTRINSIC
low complexity region	1290	1332	N/A	INTRINSIC
low complexity region	1389	1409	N/A	INTRINSIC
Pfam:53-BP1_Tudor	1480	1601	1.5e-80	PFAM
low complexity region	1631	1651	N/A	INTRINSIC
BRCT	1723	1835	7.13e-1	SMART
BRCT	1863	1951	1.03e-6	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124031

Predicted Effect

probably benign
Transcript: ENSMUST00000131245

SMART Domains

Protein: ENSMUSP00000114457
Gene: ENSMUSG00000043909

Domain	Start	End	E-Value	Type
low complexity region	136	149	N/A	INTRINSIC
low complexity region	158	169	N/A	INTRINSIC
low complexity region	647	661	N/A	INTRINSIC
low complexity region	991	1002	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000142400
AA Change: H66L

Predicted Effect

unknown
Transcript: ENSMUST00000147540
AA Change: H172L

Meta Mutation Damage Score

0.0954

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.0%
20x: 94.1%

Validation Efficiency

98% (60/61)

MGI Phenotype

PHENOTYPE: Homozygous mutations in this gene result in growth retardation, immunodeficiency, thymic hypoplasia, and increased incidence of thymic lymphomas. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aaed1	T	C	13: 64,309,098 (GRCm38)	I104V	probably damaging	Het
Abi2	A	G	1: 60,453,754 (GRCm38)	Q328R	probably damaging	Het
Agr3	C	A	12: 35,947,513 (GRCm38)		probably benign	Het
Brca2	T	A	5: 150,536,704 (GRCm38)	S481R	probably damaging	Het
Cabin1	T	G	10: 75,745,259 (GRCm38)	Q411P	probably damaging	Het
Calr3	A	G	8: 72,443,620 (GRCm38)	Y22H	probably damaging	Het
Caprin1	T	A	2: 103,796,766 (GRCm38)	I59F	probably damaging	Het
Cdk5rap1	T	C	2: 154,348,716 (GRCm38)	T442A	probably damaging	Het
Chn2	T	C	6: 54,269,426 (GRCm38)		probably benign	Het
Cic	C	A	7: 25,272,346 (GRCm38)	R501S	possibly damaging	Het
Coch	A	G	12: 51,601,812 (GRCm38)		probably null	Het
Defa25	G	A	8: 21,084,490 (GRCm38)	V17I	probably null	Het
Dglucy	T	C	12: 100,838,700 (GRCm38)		probably null	Het
Dtx1	T	G	5: 120,681,286 (GRCm38)	T616P	possibly damaging	Het
Eef1g	T	C	19: 8,969,977 (GRCm38)	L171P	probably benign	Het
Fam135a	A	G	1: 24,030,394 (GRCm38)	S465P	probably damaging	Het
Gm14025	A	G	2: 129,039,601 (GRCm38)	L135P	probably damaging	Het
Gm14412	A	T	2: 177,314,685 (GRCm38)	C472*	probably null	Het
Gm7104	T	C	12: 88,286,042 (GRCm38)		noncoding transcript	Het
Got2	A	G	8: 95,888,230 (GRCm38)	S26P	probably benign	Het
H2-M11	A	G	17: 36,549,231 (GRCm38)	I329M	probably damaging	Het
Hmcn2	T	A	2: 31,382,394 (GRCm38)	D1295E	possibly damaging	Het
Hoxd12	G	T	2: 74,675,427 (GRCm38)	R114L	probably damaging	Het
Ilkap	A	C	1: 91,387,250 (GRCm38)	D124E	probably damaging	Het
Med6	T	C	12: 81,581,851 (GRCm38)	Y88C	probably damaging	Het
Mep1a	A	T	17: 43,475,041 (GRCm38)	L719*	probably null	Het
Mmp23	T	C	4: 155,652,023 (GRCm38)	Y187C	probably damaging	Het
Myo1g	A	G	11: 6,520,760 (GRCm38)	M32T	possibly damaging	Het
Ncstn	T	C	1: 172,067,494 (GRCm38)	E614G	probably benign	Het
Nr2c2	C	T	6: 92,163,138 (GRCm38)	R464W	probably damaging	Het
Olfr1309	G	A	2: 111,983,297 (GRCm38)	T259M	possibly damaging	Het
Otub2	T	A	12: 103,392,826 (GRCm38)	L58*	probably null	Het
Pcdhga12	G	A	18: 37,767,629 (GRCm38)	V505I	probably benign	Het
Pcdhga9	T	A	18: 37,737,844 (GRCm38)	V242D	probably damaging	Het
Pex1	C	T	5: 3,626,084 (GRCm38)	L891F	probably damaging	Het
Pgm1	C	T	5: 64,112,061 (GRCm38)	T497I	probably benign	Het
Pikfyve	T	C	1: 65,196,681 (GRCm38)	F171L	probably damaging	Het
Pilrb1	T	G	5: 137,857,392 (GRCm38)	K79T	probably benign	Het
Pin1	C	T	9: 20,655,364 (GRCm38)	R21W	probably damaging	Het
Ptprq	A	G	10: 107,686,392 (GRCm38)		probably benign	Het
Rad17	G	A	13: 100,622,863 (GRCm38)	A552V	possibly damaging	Het
Rbbp8	A	G	18: 11,718,868 (GRCm38)	T249A	probably benign	Het
Rtkn	A	T	6: 83,135,976 (GRCm38)	I10F	probably benign	Het
Scube2	T	A	7: 109,857,590 (GRCm38)	I103F	possibly damaging	Het
Sec23b	A	G	2: 144,581,973 (GRCm38)	H514R	probably benign	Het
Serbp1	T	A	6: 67,272,220 (GRCm38)	D223E	probably benign	Het
Slc14a1	C	A	18: 78,111,392 (GRCm38)	V260L	probably benign	Het
Slc22a23	A	G	13: 34,183,126 (GRCm38)	I633T	probably damaging	Het
Stk19	A	T	17: 34,824,747 (GRCm38)		probably benign	Het
Svs2	T	C	2: 164,237,127 (GRCm38)	M287V	probably benign	Het
Syne3	T	A	12: 104,958,066 (GRCm38)	Q358L	probably damaging	Het
Synj1	A	G	16: 91,010,096 (GRCm38)	F58L	possibly damaging	Het
Tg	T	C	15: 66,674,023 (GRCm38)	V198A	probably damaging	Het
Tle4	A	T	19: 14,597,388 (GRCm38)	Y9N	probably damaging	Het
Tmem57	A	G	4: 134,804,481 (GRCm38)	Y626H	probably damaging	Het
Tmx3	G	A	18: 90,524,335 (GRCm38)	A186T	possibly damaging	Het
Traf3	G	A	12: 111,255,245 (GRCm38)	S280N	possibly damaging	Het
Trmt13	A	G	3: 116,581,518 (GRCm38)	F447S	probably damaging	Het
Ush2a	T	G	1: 188,728,504 (GRCm38)	V2654G	probably benign	Het
Vmn2r25	A	G	6: 123,840,098 (GRCm38)	Y175H	probably damaging	Het
Zfp335	T	C	2: 164,892,189 (GRCm38)	D1330G	probably damaging	Het

Other mutations in Trp53bp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00336:Trp53bp1	APN	2	121,256,579 (GRCm38)	missense	possibly damaging	0.69
IGL00690:Trp53bp1	APN	2	121,235,995 (GRCm38)	missense	probably damaging	1.00
IGL00922:Trp53bp1	APN	2	121,208,482 (GRCm38)	missense	probably damaging	0.96
IGL01475:Trp53bp1	APN	2	121,270,319 (GRCm38)	splice site	probably null
IGL01639:Trp53bp1	APN	2	121,202,692 (GRCm38)	missense	possibly damaging	0.51
IGL01662:Trp53bp1	APN	2	121,236,025 (GRCm38)	missense	probably damaging	1.00
IGL01757:Trp53bp1	APN	2	121,211,304 (GRCm38)	missense	probably damaging	0.99
IGL01829:Trp53bp1	APN	2	121,215,896 (GRCm38)	missense	probably benign	0.39
IGL02247:Trp53bp1	APN	2	121,236,589 (GRCm38)	missense	probably damaging	1.00
IGL02349:Trp53bp1	APN	2	121,199,074 (GRCm38)	missense	probably damaging	1.00
IGL02391:Trp53bp1	APN	2	121,202,710 (GRCm38)	missense	possibly damaging	0.67
chives	UTSW	2	121,251,868 (GRCm38)	missense	probably null	0.13
concur	UTSW	2	121,270,319 (GRCm38)	splice site	probably null
confirmation	UTSW	2	121,205,113 (GRCm38)	critical splice acceptor site	probably null
Infra	UTSW	2	121,247,499 (GRCm38)	critical splice donor site	probably null
Legume	UTSW	2	121,199,042 (GRCm38)	missense	probably damaging	0.99
lentil	UTSW	2	121,251,868 (GRCm38)	missense	probably null	0.13
lentil2	UTSW	2	121,207,887 (GRCm38)	missense	probably damaging	1.00
Profundus	UTSW	2	121,207,803 (GRCm38)	missense	probably damaging	1.00
split_pea	UTSW	2	121,228,606 (GRCm38)	nonsense	probably null
verily	UTSW	2	121,211,313 (GRCm38)	missense	probably damaging	1.00
PIT1430001:Trp53bp1	UTSW	2	121,271,275 (GRCm38)	missense	probably damaging	1.00
R0045:Trp53bp1	UTSW	2	121,204,497 (GRCm38)	missense	probably benign
R0060:Trp53bp1	UTSW	2	121,204,525 (GRCm38)	missense	probably damaging	1.00
R0060:Trp53bp1	UTSW	2	121,204,525 (GRCm38)	missense	probably damaging	1.00
R0103:Trp53bp1	UTSW	2	121,236,759 (GRCm38)	missense	possibly damaging	0.92
R0103:Trp53bp1	UTSW	2	121,236,759 (GRCm38)	missense	possibly damaging	0.92
R0281:Trp53bp1	UTSW	2	121,270,237 (GRCm38)	missense	probably damaging	1.00
R0386:Trp53bp1	UTSW	2	121,204,943 (GRCm38)	missense	probably damaging	1.00
R0427:Trp53bp1	UTSW	2	121,236,017 (GRCm38)	missense	probably damaging	1.00
R0505:Trp53bp1	UTSW	2	121,269,969 (GRCm38)	missense	probably damaging	0.99
R0522:Trp53bp1	UTSW	2	121,251,868 (GRCm38)	missense	probably null	0.13
R0523:Trp53bp1	UTSW	2	121,251,868 (GRCm38)	missense	probably null	0.13
R0525:Trp53bp1	UTSW	2	121,251,868 (GRCm38)	missense	probably null	0.13
R0543:Trp53bp1	UTSW	2	121,251,868 (GRCm38)	missense	probably null	0.13
R0559:Trp53bp1	UTSW	2	121,227,801 (GRCm38)	missense	probably damaging	1.00
R0573:Trp53bp1	UTSW	2	121,228,172 (GRCm38)	splice site	probably benign
R0593:Trp53bp1	UTSW	2	121,270,528 (GRCm38)	missense	possibly damaging	0.95
R0648:Trp53bp1	UTSW	2	121,235,707 (GRCm38)	missense	probably benign	0.20
R0680:Trp53bp1	UTSW	2	121,251,868 (GRCm38)	missense	probably null	0.13
R0732:Trp53bp1	UTSW	2	121,248,264 (GRCm38)	missense	probably null	0.96
R0905:Trp53bp1	UTSW	2	121,204,318 (GRCm38)	splice site	probably benign
R1377:Trp53bp1	UTSW	2	121,270,642 (GRCm38)	missense	probably damaging	1.00
R1415:Trp53bp1	UTSW	2	121,236,184 (GRCm38)	missense	probably damaging	1.00
R1725:Trp53bp1	UTSW	2	121,252,000 (GRCm38)	missense	possibly damaging	0.46
R1971:Trp53bp1	UTSW	2	121,205,036 (GRCm38)	missense	probably damaging	1.00
R2045:Trp53bp1	UTSW	2	121,204,483 (GRCm38)	missense	probably benign
R2143:Trp53bp1	UTSW	2	121,216,064 (GRCm38)	missense	probably benign	0.00
R2282:Trp53bp1	UTSW	2	121,270,273 (GRCm38)	nonsense	probably null
R2296:Trp53bp1	UTSW	2	121,209,247 (GRCm38)	missense	possibly damaging	0.96
R3106:Trp53bp1	UTSW	2	121,236,652 (GRCm38)	missense	probably damaging	1.00
R3792:Trp53bp1	UTSW	2	121,200,329 (GRCm38)	missense	probably damaging	1.00
R3793:Trp53bp1	UTSW	2	121,200,329 (GRCm38)	missense	probably damaging	1.00
R4001:Trp53bp1	UTSW	2	121,205,085 (GRCm38)	missense	probably damaging	1.00
R4327:Trp53bp1	UTSW	2	121,256,650 (GRCm38)	missense	probably damaging	1.00
R4585:Trp53bp1	UTSW	2	121,207,951 (GRCm38)	missense	probably damaging	1.00
R4630:Trp53bp1	UTSW	2	121,207,887 (GRCm38)	missense	probably damaging	1.00
R4744:Trp53bp1	UTSW	2	121,211,313 (GRCm38)	missense	probably damaging	1.00
R4751:Trp53bp1	UTSW	2	121,227,809 (GRCm38)	missense	probably damaging	1.00
R4754:Trp53bp1	UTSW	2	121,207,879 (GRCm38)	missense	probably damaging	1.00
R4755:Trp53bp1	UTSW	2	121,228,606 (GRCm38)	nonsense	probably null
R4850:Trp53bp1	UTSW	2	121,205,113 (GRCm38)	critical splice acceptor site	probably null
R4870:Trp53bp1	UTSW	2	121,256,641 (GRCm38)	missense	probably damaging	1.00
R4879:Trp53bp1	UTSW	2	121,202,603 (GRCm38)	missense	probably damaging	0.99
R4924:Trp53bp1	UTSW	2	121,221,220 (GRCm38)	nonsense	probably null
R4962:Trp53bp1	UTSW	2	121,270,546 (GRCm38)	missense	probably benign	0.12
R5019:Trp53bp1	UTSW	2	121,270,319 (GRCm38)	splice site	probably null
R5111:Trp53bp1	UTSW	2	121,211,387 (GRCm38)	missense	probably damaging	0.99
R5149:Trp53bp1	UTSW	2	121,216,117 (GRCm38)	missense	probably benign	0.00
R5252:Trp53bp1	UTSW	2	121,243,983 (GRCm38)	missense	probably benign	0.40
R5533:Trp53bp1	UTSW	2	121,207,746 (GRCm38)	missense	probably damaging	1.00
R5642:Trp53bp1	UTSW	2	121,236,662 (GRCm38)	missense	probably benign	0.00
R5773:Trp53bp1	UTSW	2	121,243,914 (GRCm38)	missense	probably damaging	1.00
R5819:Trp53bp1	UTSW	2	121,208,392 (GRCm38)	nonsense	probably null
R5886:Trp53bp1	UTSW	2	121,205,021 (GRCm38)	missense	probably damaging	1.00
R5908:Trp53bp1	UTSW	2	121,236,823 (GRCm38)	missense	probably benign	0.06
R6012:Trp53bp1	UTSW	2	121,256,602 (GRCm38)	missense	probably benign	0.07
R6351:Trp53bp1	UTSW	2	121,269,945 (GRCm38)	missense	probably damaging	1.00
R6406:Trp53bp1	UTSW	2	121,270,612 (GRCm38)	missense	probably damaging	0.99
R6575:Trp53bp1	UTSW	2	121,228,603 (GRCm38)	missense	probably damaging	1.00
R6619:Trp53bp1	UTSW	2	121,247,499 (GRCm38)	critical splice donor site	probably null
R6626:Trp53bp1	UTSW	2	121,207,803 (GRCm38)	missense	probably damaging	1.00
R6754:Trp53bp1	UTSW	2	121,270,576 (GRCm38)	missense	possibly damaging	0.83
R6765:Trp53bp1	UTSW	2	121,209,309 (GRCm38)	missense	probably damaging	1.00
R6806:Trp53bp1	UTSW	2	121,228,666 (GRCm38)	missense	probably damaging	0.99
R6860:Trp53bp1	UTSW	2	121,199,113 (GRCm38)	missense	probably damaging	1.00
R6991:Trp53bp1	UTSW	2	121,208,040 (GRCm38)	missense	probably damaging	1.00
R7278:Trp53bp1	UTSW	2	121,199,035 (GRCm38)	missense	probably damaging	1.00
R7339:Trp53bp1	UTSW	2	121,236,469 (GRCm38)	missense	probably benign	0.00
R7357:Trp53bp1	UTSW	2	121,211,300 (GRCm38)	missense	probably damaging	1.00
R7477:Trp53bp1	UTSW	2	121,236,346 (GRCm38)	missense	probably benign	0.34
R7577:Trp53bp1	UTSW	2	121,236,638 (GRCm38)	missense	possibly damaging	0.65
R7643:Trp53bp1	UTSW	2	121,247,814 (GRCm38)	splice site	probably null
R7728:Trp53bp1	UTSW	2	121,207,899 (GRCm38)	missense	probably damaging	1.00
R7806:Trp53bp1	UTSW	2	121,205,061 (GRCm38)	missense	probably damaging	0.99
R7955:Trp53bp1	UTSW	2	121,235,744 (GRCm38)	missense	possibly damaging	0.59
R8099:Trp53bp1	UTSW	2	121,199,749 (GRCm38)	missense	probably damaging	1.00
R8200:Trp53bp1	UTSW	2	121,236,176 (GRCm38)	missense	probably benign	0.00
R8282:Trp53bp1	UTSW	2	121,199,042 (GRCm38)	missense	probably damaging	0.99
R9136:Trp53bp1	UTSW	2	121,236,611 (GRCm38)	missense	possibly damaging	0.84
R9152:Trp53bp1	UTSW	2	121,198,575 (GRCm38)	missense	probably damaging	0.99
R9292:Trp53bp1	UTSW	2	121,215,696 (GRCm38)	missense	probably damaging	0.97
R9340:Trp53bp1	UTSW	2	121,269,979 (GRCm38)	missense	probably benign	0.40
R9475:Trp53bp1	UTSW	2	121,209,280 (GRCm38)	missense	probably benign	0.00
R9616:Trp53bp1	UTSW	2	121,236,176 (GRCm38)	missense	probably benign	0.30
R9675:Trp53bp1	UTSW	2	121,256,608 (GRCm38)	missense	probably benign	0.03
R9779:Trp53bp1	UTSW	2	121,235,988 (GRCm38)	missense	probably damaging	1.00
RF046:Trp53bp1	UTSW	2	121,216,001 (GRCm38)	frame shift	probably null
Z1088:Trp53bp1	UTSW	2	121,253,645 (GRCm38)	missense	probably benign	0.04
Z1177:Trp53bp1	UTSW	2	121,244,060 (GRCm38)	missense	probably benign	0.33

Predicted Primers

PCR Primer
(F):5'- ACATCAGCCCTCTCAGTCAG -3'
(R):5'- GGCTGTGAAGCTGATAGGAC -3'

Sequencing Primer
(F):5'- TCAGTCAGGCCAACTCCTCAG -3'
(R):5'- CACTTTGCCTAAAGAAGGT -3'

Posted On

2015-04-17