Mutagenetix > Incidental Mutation

Incidental Mutation 'R3946:Trmt13'

307696

Institutional Source

Beutler Lab

Gene Symbol

Trmt13

Ensembl Gene

ENSMUSG00000033439

Gene Name

tRNA methyltransferase 13

Synonyms

MMRRC Submission

040827-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.131) question?

Stock #

R3946 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

116581093-116614587 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 116581518 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Serine at position 447 (F447S)

Ref Sequence

ENSEMBL: ENSMUSP00000047320 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029573] [ENSMUST00000041524] [ENSMUST00000183638] [ENSMUST00000184963] [ENSMUST00000197190]

AlphaFold

Q8BYH3

Predicted Effect

probably benign
Transcript: ENSMUST00000029573

SMART Domains

Protein: ENSMUSP00000029573
Gene: ENSMUSG00000027961

Domain	Start	End	E-Value	Type
LRR	105	127	1.15e1	SMART
LRR_TYP	128	151	7.26e-3	SMART
LRR	175	197	6.58e0	SMART
LRR	198	220	1e1	SMART
LRR	221	243	7.16e0	SMART
LRR	244	267	6.58e0	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000041524
AA Change: F447S

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000047320
Gene: ENSMUSG00000033439
AA Change: F447S

Domain	Start	End	E-Value	Type
Pfam:zf-TRM13_CCCH	17	45	7.2e-17	PFAM
Pfam:zf-U11-48K	56	80	3.4e-12	PFAM
Pfam:TRM13	165	469	7e-96	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156161

Predicted Effect

probably benign
Transcript: ENSMUST00000183638

SMART Domains

Protein: ENSMUSP00000139223
Gene: ENSMUSG00000033439

Domain	Start	End	E-Value	Type
Pfam:zf-TRM13_CCCH	16	46	1.4e-17	PFAM
Pfam:zf-U11-48K	55	81	1.2e-12	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000184963

SMART Domains

Protein: ENSMUSP00000138868
Gene: ENSMUSG00000033439

Domain	Start	End	E-Value	Type
Pfam:zf-TRM13_CCCH	16	46	2.9e-17	PFAM
Pfam:zf-U11-48K	55	81	2.3e-12	PFAM
Pfam:TRM13	165	285	3.4e-42	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000197190

SMART Domains

Protein: ENSMUSP00000143637
Gene: ENSMUSG00000033439

Domain	Start	End	E-Value	Type
Pfam:TRM13	116	179	5.2e-19	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000199439

Meta Mutation Damage Score

0.9095

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.0%
20x: 94.1%

Validation Efficiency

98% (60/61)

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aaed1	T	C	13: 64,309,098	I104V	probably damaging	Het
Abi2	A	G	1: 60,453,754	Q328R	probably damaging	Het
Agr3	C	A	12: 35,947,513		probably benign	Het
Brca2	T	A	5: 150,536,704	S481R	probably damaging	Het
Cabin1	T	G	10: 75,745,259	Q411P	probably damaging	Het
Calr3	A	G	8: 72,443,620	Y22H	probably damaging	Het
Caprin1	T	A	2: 103,796,766	I59F	probably damaging	Het
Cdk5rap1	T	C	2: 154,348,716	T442A	probably damaging	Het
Chn2	T	C	6: 54,269,426		probably benign	Het
Cic	C	A	7: 25,272,346	R501S	possibly damaging	Het
Coch	A	G	12: 51,601,812		probably null	Het
Defa25	G	A	8: 21,084,490	V17I	probably null	Het
Dglucy	T	C	12: 100,838,700		probably null	Het
Dtx1	T	G	5: 120,681,286	T616P	possibly damaging	Het
Eef1g	T	C	19: 8,969,977	L171P	probably benign	Het
Fam135a	A	G	1: 24,030,394	S465P	probably damaging	Het
Gm14025	A	G	2: 129,039,601	L135P	probably damaging	Het
Gm14412	A	T	2: 177,314,685	C472*	probably null	Het
Gm7104	T	C	12: 88,286,042		noncoding transcript	Het
Got2	A	G	8: 95,888,230	S26P	probably benign	Het
H2-M11	A	G	17: 36,549,231	I329M	probably damaging	Het
Hmcn2	T	A	2: 31,382,394	D1295E	possibly damaging	Het
Hoxd12	G	T	2: 74,675,427	R114L	probably damaging	Het
Ilkap	A	C	1: 91,387,250	D124E	probably damaging	Het
Med6	T	C	12: 81,581,851	Y88C	probably damaging	Het
Mep1a	A	T	17: 43,475,041	L719*	probably null	Het
Mmp23	T	C	4: 155,652,023	Y187C	probably damaging	Het
Myo1g	A	G	11: 6,520,760	M32T	possibly damaging	Het
Ncstn	T	C	1: 172,067,494	E614G	probably benign	Het
Nr2c2	C	T	6: 92,163,138	R464W	probably damaging	Het
Olfr1309	G	A	2: 111,983,297	T259M	possibly damaging	Het
Otub2	T	A	12: 103,392,826	L58*	probably null	Het
Pcdhga12	G	A	18: 37,767,629	V505I	probably benign	Het
Pcdhga9	T	A	18: 37,737,844	V242D	probably damaging	Het
Pex1	C	T	5: 3,626,084	L891F	probably damaging	Het
Pgm1	C	T	5: 64,112,061	T497I	probably benign	Het
Pikfyve	T	C	1: 65,196,681	F171L	probably damaging	Het
Pilrb1	T	G	5: 137,857,392	K79T	probably benign	Het
Pin1	C	T	9: 20,655,364	R21W	probably damaging	Het
Ptprq	A	G	10: 107,686,392		probably benign	Het
Rad17	G	A	13: 100,622,863	A552V	possibly damaging	Het
Rbbp8	A	G	18: 11,718,868	T249A	probably benign	Het
Rtkn	A	T	6: 83,135,976	I10F	probably benign	Het
Scube2	T	A	7: 109,857,590	I103F	possibly damaging	Het
Sec23b	A	G	2: 144,581,973	H514R	probably benign	Het
Serbp1	T	A	6: 67,272,220	D223E	probably benign	Het
Slc14a1	C	A	18: 78,111,392	V260L	probably benign	Het
Slc22a23	A	G	13: 34,183,126	I633T	probably damaging	Het
Stk19	A	T	17: 34,824,747		probably benign	Het
Svs2	T	C	2: 164,237,127	M287V	probably benign	Het
Syne3	T	A	12: 104,958,066	Q358L	probably damaging	Het
Synj1	A	G	16: 91,010,096	F58L	possibly damaging	Het
Tg	T	C	15: 66,674,023	V198A	probably damaging	Het
Tle4	A	T	19: 14,597,388	Y9N	probably damaging	Het
Tmem57	A	G	4: 134,804,481	Y626H	probably damaging	Het
Tmx3	G	A	18: 90,524,335	A186T	possibly damaging	Het
Traf3	G	A	12: 111,255,245	S280N	possibly damaging	Het
Trp53bp1	T	A	2: 121,228,626	H918L	probably damaging	Het
Ush2a	T	G	1: 188,728,504	V2654G	probably benign	Het
Vmn2r25	A	G	6: 123,840,098	Y175H	probably damaging	Het
Zfp335	T	C	2: 164,892,189	D1330G	probably damaging	Het

Other mutations in Trmt13

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00926:Trmt13	APN	3	116590235	nonsense	probably null
IGL01516:Trmt13	APN	3	116589810	unclassified	probably benign
IGL01732:Trmt13	APN	3	116581464	missense	probably damaging	1.00
IGL01783:Trmt13	APN	3	116582912	nonsense	probably null
IGL02470:Trmt13	APN	3	116590228	critical splice donor site	probably null
IGL02492:Trmt13	APN	3	116582543	missense	possibly damaging	0.53
IGL02531:Trmt13	APN	3	116592191	critical splice donor site	probably null
IGL03156:Trmt13	APN	3	116585802	missense	probably benign	0.00
R0394:Trmt13	UTSW	3	116582650	missense	probably damaging	1.00
R0446:Trmt13	UTSW	3	116582626	missense	probably damaging	1.00
R2211:Trmt13	UTSW	3	116594754	missense	probably benign	0.00
R2942:Trmt13	UTSW	3	116585772	missense	probably damaging	1.00
R3124:Trmt13	UTSW	3	116590244	missense	probably benign	0.00
R3945:Trmt13	UTSW	3	116581518	missense	probably damaging	1.00
R4255:Trmt13	UTSW	3	116582688	nonsense	probably null
R4520:Trmt13	UTSW	3	116581613	splice site	probably null
R4609:Trmt13	UTSW	3	116594827	utr 5 prime	probably benign
R4678:Trmt13	UTSW	3	116589755	missense	probably damaging	1.00
R4679:Trmt13	UTSW	3	116589755	missense	probably damaging	1.00
R4703:Trmt13	UTSW	3	116594598	missense	probably benign	0.00
R6526:Trmt13	UTSW	3	116592215	missense	probably damaging	1.00
R7064:Trmt13	UTSW	3	116582697	missense	probably damaging	1.00
R7079:Trmt13	UTSW	3	116582831	missense	probably benign	0.00
R7308:Trmt13	UTSW	3	116594739	missense	probably benign	0.09
R8347:Trmt13	UTSW	3	116582768	missense	probably benign	0.00
R8491:Trmt13	UTSW	3	116582579	missense	probably benign
R8544:Trmt13	UTSW	3	116592445	splice site	probably null
R9108:Trmt13	UTSW	3	116581480	missense	probably damaging	1.00
R9208:Trmt13	UTSW	3	116582707	missense	possibly damaging	0.95
R9492:Trmt13	UTSW	3	116594632	missense	probably benign	0.10

Predicted Primers

PCR Primer
(F):5'- GAGCCCTGCTGAAAAGGAATAC -3'
(R):5'- GCTTCGTAAATGGCAGTGG -3'

Sequencing Primer
(F):5'- GAAGACAAACGTCACGTTC -3'
(R):5'- GTGGCCAAACTTGGTATG -3'

Posted On

2015-04-17