Mutagenetix > Incidental Mutations

Incidental Mutation 'R3951:Scarb1'

307929

Institutional Source

Beutler Lab

Gene Symbol

Scarb1

Ensembl Gene

ENSMUSG00000037936

Gene Name

scavenger receptor class B, member 1

Synonyms

Cd36l1, Srb1, Hdlq1, SRBI, Hlb398, Cla-1, SR-BI, D5Ertd460e

MMRRC Submission

040828-MU

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R3951 (G1)

Quality Score

218

Status

Validated

Chromosome

Chromosomal Location

125277087-125341094 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 125287411 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Glycine at position 85 (C85G)

Ref Sequence

ENSEMBL: ENSMUSP00000122100 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000086075] [ENSMUST00000111390] [ENSMUST00000127148]

AlphaFold

Q61009

Predicted Effect

possibly damaging
Transcript: ENSMUST00000086075
AA Change: C384G

PolyPhen 2 Score 0.664 (Sensitivity: 0.86; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000083242
Gene: ENSMUSG00000037936
AA Change: C384G

Domain	Start	End	E-Value	Type
Pfam:CD36	16	463	6.4e-154	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000111390
AA Change: C384G

PolyPhen 2 Score 0.664 (Sensitivity: 0.86; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000107021
Gene: ENSMUSG00000037936
AA Change: C384G

Domain	Start	End	E-Value	Type
Pfam:CD36	14	465	4.7e-158	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124582

Predicted Effect

probably damaging
Transcript: ENSMUST00000127148
AA Change: C85G

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000122100
Gene: ENSMUSG00000037936
AA Change: C85G

Domain	Start	End	E-Value	Type
Pfam:CD36	1	123	1.2e-43	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135736

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148373

Meta Mutation Damage Score

0.8613

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 94.9%

Validation Efficiency

100% (55/55)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a plasma membrane receptor for high density lipoprotein cholesterol (HDL). The encoded protein mediates cholesterol transfer to and from HDL. In addition, this protein is a receptor for hepatitis C virus glycoprotein E2. Two transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Mar 2011]
PHENOTYPE: Targeted mutations result in abnormal lipoprotein metablolism and, for one allele, reversible female infertility. An ENU mutant shows increased cholesterol levels. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700017N19Rik	T	C	10: 100,615,296		probably benign	Het
4932414N04Rik	T	C	2: 68,664,403		probably null	Het
Akr1c18	C	T	13: 4,135,285	V283I	probably benign	Het
Atp2b2	T	A	6: 113,760,831	M861L	possibly damaging	Het
Cdh23	T	C	10: 60,657,326	Y3C	probably benign	Het
Clspn	A	G	4: 126,576,379	E814G	probably damaging	Het
Csgalnact1	T	C	8: 68,461,262	Q97R	probably benign	Het
Dera	A	G	6: 137,837,120	Y100C	probably damaging	Het
Ect2	A	T	3: 27,130,120	D517E	probably benign	Het
Epha4	A	T	1: 77,399,716	Y509N	probably damaging	Het
Fat2	T	C	11: 55,296,382	T1213A	probably benign	Het
Fkbp8	T	A	8: 70,532,661	L275Q	probably damaging	Het
Gabrb2	A	G	11: 42,626,881	Y510C	probably damaging	Het
Gda	T	C	19: 21,472,445	T16A	probably benign	Het
Ggcx	G	A	6: 72,426,558	G363R	probably benign	Het
Gm527	T	G	12: 64,923,502		probably benign	Het
Hoxb2	A	G	11: 96,353,175	E204G	probably damaging	Het
Hsd17b11	G	A	5: 103,992,937		probably benign	Het
Kat14	T	C	2: 144,407,329		probably benign	Het
Kif16b	C	T	2: 142,707,359	V1079I	probably benign	Het
Klhl29	T	A	12: 5,140,660	S112C	probably damaging	Het
Lpcat2	G	T	8: 92,864,903	M58I	probably benign	Het
Lrrc8d	G	T	5: 105,814,276	V851F	probably benign	Het
Ltbp3	T	C	19: 5,756,001	V929A	probably damaging	Het
Map3k20	T	G	2: 72,438,300	I550M	probably damaging	Het
Map3k9	T	C	12: 81,722,521	M941V	probably benign	Het
Myom2	A	T	8: 15,084,556	Y453F	probably benign	Het
Ncapd2	T	C	6: 125,186,784	K78E	probably damaging	Het
Ncor2	G	T	5: 125,032,256	D1496E	possibly damaging	Het
Ndnf	T	C	6: 65,703,141	Y135H	possibly damaging	Het
Ndst1	T	C	18: 60,697,139	N633S	probably benign	Het
Nmur2	G	C	11: 56,040,225	P220R	probably damaging	Het
Nsd1	G	C	13: 55,268,454	E1438Q	probably benign	Het
Olfr1043	G	T	2: 86,162,618	C110*	probably null	Het
Olfr1128	T	C	2: 87,545,065	T160A	probably damaging	Het
Olfr1413	T	A	1: 92,573,789	M206K	possibly damaging	Het
Olfr229	A	T	9: 39,910,725	R307S	probably benign	Het
Pom121l2	T	G	13: 21,982,128	S190A	probably damaging	Het
Prpmp5	G	A	6: 132,312,694	P56S	unknown	Het
Rtn4ip1	T	A	10: 43,909,897		probably null	Het
Sh2d4b	A	G	14: 40,872,546	I159T	probably damaging	Het
Sntg1	C	T	1: 8,782,901		probably benign	Het
Sos1	G	A	17: 80,424,181	T630I	probably damaging	Het
Spata7	T	A	12: 98,669,473	D517E	probably damaging	Het
Tcaf1	T	C	6: 42,679,059	T328A	probably benign	Het
Ticrr	T	C	7: 79,682,069	L776S	probably damaging	Het
Trpc2	T	A	7: 102,093,574	M597K	probably damaging	Het
Ttc37	T	G	13: 76,130,219	L551V	probably damaging	Het
Tubb3	C	A	8: 123,421,264	T312N	probably damaging	Het
Ubr4	G	A	4: 139,393,094	V277M	probably damaging	Het
Uhrf2	G	A	19: 30,079,861	R473Q	probably damaging	Het
Vmn2r43	T	A	7: 8,255,320	H298L	probably benign	Het

Other mutations in Scarb1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03355:Scarb1	APN	5	125289702	missense	probably benign	0.01
IGL03052:Scarb1	UTSW	5	125294099	missense	probably damaging	1.00
R0051:Scarb1	UTSW	5	125281100	splice site	probably null
R0317:Scarb1	UTSW	5	125289692	missense	probably damaging	0.99
R0455:Scarb1	UTSW	5	125289681	missense	probably damaging	0.96
R0491:Scarb1	UTSW	5	125298731	unclassified	probably benign
R0655:Scarb1	UTSW	5	125300440	missense	probably damaging	1.00
R0676:Scarb1	UTSW	5	125297214	unclassified	probably benign
R2074:Scarb1	UTSW	5	125294143	missense	probably benign
R2267:Scarb1	UTSW	5	125287375	missense	possibly damaging	0.82
R4080:Scarb1	UTSW	5	125277795	missense	probably damaging	1.00
R4452:Scarb1	UTSW	5	125300345	missense	probably damaging	1.00
R4925:Scarb1	UTSW	5	125297299	missense	probably damaging	1.00
R5669:Scarb1	UTSW	5	125300387	missense	probably damaging	1.00
R5809:Scarb1	UTSW	5	125304222	missense	probably damaging	0.98
R5872:Scarb1	UTSW	5	125304277	missense	possibly damaging	0.60
R5883:Scarb1	UTSW	5	125340907	unclassified	probably benign
R6321:Scarb1	UTSW	5	125304331	missense	probably damaging	1.00
R6508:Scarb1	UTSW	5	125304325	missense	possibly damaging	0.49
R6618:Scarb1	UTSW	5	125304330	missense	probably damaging	0.96
R6931:Scarb1	UTSW	5	125284719	missense	probably damaging	1.00
R7058:Scarb1	UTSW	5	125297230	missense	probably damaging	1.00
R7099:Scarb1	UTSW	5	125304350	missense	probably damaging	0.98
R7146:Scarb1	UTSW	5	125284025	missense	probably benign
R7830:Scarb1	UTSW	5	125287383	missense	probably damaging	1.00
R7873:Scarb1	UTSW	5	125294039	missense	probably damaging	1.00
R8158:Scarb1	UTSW	5	125303137	missense	probably benign	0.01
R8467:Scarb1	UTSW	5	125298667	missense	probably damaging	0.99
R8500:Scarb1	UTSW	5	125294163	missense	probably damaging	1.00
R8814:Scarb1	UTSW	5	125294092	missense	probably benign	0.00
R9025:Scarb1	UTSW	5	125304350	missense	probably damaging	0.98
R9169:Scarb1	UTSW	5	125294082	missense	probably damaging	1.00
R9462:Scarb1	UTSW	5	125340827	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AAAAGAGGTGGTTGGATCCC -3'
(R):5'- CCTTTGGGAGCAGGTATTTCC -3'

Sequencing Primer
(F):5'- CAACGCTTGGGCCTCGC -3'
(R):5'- AGGTATTTCCTGAGGGAGAGCC -3'

Posted On

2015-04-17