Incidental Mutation 'R3897:Mgat4f'
ID 309001
Institutional Source Beutler Lab
Gene Symbol Mgat4f
Ensembl Gene ENSMUSG00000050526
Gene Name MGAT4 family, member F
Synonyms 4933406M09Rik
MMRRC Submission 040808-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R3897 (G1)
Quality Score 225
Status Validated
Chromosome 1
Chromosomal Location 134313678-134318719 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 134318176 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 316 (D316G)
Ref Sequence ENSEMBL: ENSMUSP00000124251 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000162187]
AlphaFold G3XA12
Predicted Effect possibly damaging
Transcript: ENSMUST00000162187
AA Change: D316G

PolyPhen 2 Score 0.923 (Sensitivity: 0.81; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000124251
Gene: ENSMUSG00000050526
AA Change: D316G

DomainStartEndE-ValueType
Pfam:Glyco_transf_54 52 326 7.6e-79 PFAM
low complexity region 395 405 N/A INTRINSIC
Meta Mutation Damage Score 0.1795 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.1%
  • 20x: 94.4%
Validation Efficiency 97% (35/36)
Allele List at MGI

All alleles(6) : Targeted(2) Gene trapped(4)

 

Other mutations in this stock
Total: 32 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam15 T C 3: 89,254,245 (GRCm39) H184R probably benign Het
Ap1g1 A G 8: 110,581,631 (GRCm39) D633G probably damaging Het
Arhgef28 C T 13: 98,093,084 (GRCm39) R999H probably damaging Het
Armc3 T C 2: 19,273,988 (GRCm39) S341P probably damaging Het
Cmya5 T C 13: 93,233,189 (GRCm39) E633G possibly damaging Het
Colgalt1 G A 8: 72,072,306 (GRCm39) M275I probably damaging Het
Commd7 T C 2: 153,464,710 (GRCm39) T23A probably benign Het
Cts3 A G 13: 61,712,800 (GRCm39) Y307H probably benign Het
Dlgap4 C A 2: 156,587,989 (GRCm39) P89Q probably damaging Het
Ecm1 A G 3: 95,643,298 (GRCm39) L334P probably damaging Het
Fzd8 G A 18: 9,214,939 (GRCm39) V674I possibly damaging Het
Gosr2 A G 11: 103,588,472 (GRCm39) Y5H possibly damaging Het
Gria4 T A 9: 4,513,260 (GRCm39) D283V probably damaging Het
Hivep2 C A 10: 14,004,713 (GRCm39) T437K probably benign Het
Iqcm C T 8: 76,480,028 (GRCm39) R329C probably damaging Het
Kdm4b T C 17: 56,703,955 (GRCm39) C233R probably damaging Het
Ltbp1 T C 17: 75,581,011 (GRCm39) C391R probably damaging Het
Man2b1 G T 8: 85,823,577 (GRCm39) probably benign Het
Nisch A G 14: 30,912,957 (GRCm39) probably benign Het
Nrxn2 T G 19: 6,569,287 (GRCm39) D1394E probably damaging Het
Or4c12 T C 2: 89,774,153 (GRCm39) E102G probably benign Het
Or4k77 T C 2: 111,199,106 (GRCm39) L43P possibly damaging Het
Pabpc6 T C 17: 9,888,056 (GRCm39) D165G probably benign Het
Psat1 A G 19: 15,896,817 (GRCm39) probably null Het
Psd A C 19: 46,313,024 (GRCm39) N115K possibly damaging Het
Rfwd3 C T 8: 112,014,874 (GRCm39) R326Q probably damaging Het
Rnf144a A G 12: 26,360,712 (GRCm39) V275A probably damaging Het
Slc35b3 A G 13: 39,118,739 (GRCm39) F356L probably benign Het
Tmc4 A G 7: 3,674,087 (GRCm39) V364A probably benign Het
Tmem203 T C 2: 25,145,935 (GRCm39) F85S probably benign Het
Tra2a T C 6: 49,222,476 (GRCm39) probably benign Het
Ttc21b C T 2: 66,065,413 (GRCm39) E454K probably benign Het
Other mutations in Mgat4f
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01554:Mgat4f APN 1 134,317,696 (GRCm39) missense probably damaging 1.00
IGL01862:Mgat4f APN 1 134,318,349 (GRCm39) missense probably benign 0.03
P0005:Mgat4f UTSW 1 134,315,646 (GRCm39) missense probably benign 0.00
R0498:Mgat4f UTSW 1 134,318,610 (GRCm39) missense possibly damaging 0.69
R0563:Mgat4f UTSW 1 134,317,777 (GRCm39) missense probably benign 0.00
R0731:Mgat4f UTSW 1 134,317,713 (GRCm39) missense probably benign
R1558:Mgat4f UTSW 1 134,318,512 (GRCm39) missense probably damaging 1.00
R2146:Mgat4f UTSW 1 134,318,251 (GRCm39) missense probably damaging 1.00
R2148:Mgat4f UTSW 1 134,318,251 (GRCm39) missense probably damaging 1.00
R2901:Mgat4f UTSW 1 134,318,662 (GRCm39) missense probably damaging 0.99
R4543:Mgat4f UTSW 1 134,317,531 (GRCm39) missense probably benign 0.31
R4937:Mgat4f UTSW 1 134,317,714 (GRCm39) missense probably benign 0.00
R5490:Mgat4f UTSW 1 134,317,666 (GRCm39) missense probably damaging 1.00
R5684:Mgat4f UTSW 1 134,317,660 (GRCm39) missense probably benign 0.04
R5823:Mgat4f UTSW 1 134,318,655 (GRCm39) missense probably damaging 0.98
R6488:Mgat4f UTSW 1 134,318,626 (GRCm39) missense probably damaging 1.00
R7177:Mgat4f UTSW 1 134,318,163 (GRCm39) missense probably benign 0.08
R7201:Mgat4f UTSW 1 134,318,206 (GRCm39) missense possibly damaging 0.69
R7671:Mgat4f UTSW 1 134,317,800 (GRCm39) missense probably benign 0.27
R7749:Mgat4f UTSW 1 134,318,250 (GRCm39) missense probably benign 0.45
R8385:Mgat4f UTSW 1 134,318,376 (GRCm39) missense probably benign 0.00
R9393:Mgat4f UTSW 1 134,318,596 (GRCm39) missense probably benign 0.02
Z1177:Mgat4f UTSW 1 134,317,896 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TGGGTGAGCCTAGACTTCTC -3'
(R):5'- GGCTTATCTAGAACCACCAGC -3'

Sequencing Primer
(F):5'- GTGAGCCTAGACTTCTCCAGCATG -3'
(R):5'- CAAGTAGTTGCCTTCTAGAGGGTCC -3'
Posted On 2015-04-17