Incidental Mutation 'R3905:Vmn2r9'
ID 309139
Institutional Source Beutler Lab
Gene Symbol Vmn2r9
Ensembl Gene ENSMUSG00000091624
Gene Name vomeronasal 2, receptor 9
Synonyms EG435864
Accession Numbers
Essential gene? Probably non essential (E-score: 0.113) question?
Stock # R3905 (G1)
Quality Score 225
Status Not validated
Chromosome 5
Chromosomal Location 108990813-109000376 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to A at 108995785 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Alanine to Serine at position 288 (A288S)
Ref Sequence ENSEMBL: ENSMUSP00000129520 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000170419]
AlphaFold K7N6Z8
Predicted Effect probably benign
Transcript: ENSMUST00000170419
AA Change: A288S

PolyPhen 2 Score 0.374 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000129520
Gene: ENSMUSG00000091624
AA Change: A288S

DomainStartEndE-ValueType
signal peptide 1 26 N/A INTRINSIC
Pfam:ANF_receptor 77 412 8.1e-29 PFAM
Pfam:NCD3G 507 561 2.3e-16 PFAM
Pfam:7tm_3 592 829 3.4e-54 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000176157
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.2%
  • 20x: 94.8%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 40 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca12 A T 1: 71,307,389 (GRCm39) I1964N possibly damaging Het
Abca12 A G 1: 71,318,616 (GRCm39) F1796L probably benign Het
Abca17 T A 17: 24,515,257 (GRCm39) M821L probably benign Het
Adamts3 C A 5: 90,009,214 (GRCm39) G150C probably damaging Het
Ap4b1 A T 3: 103,726,209 (GRCm39) I262F possibly damaging Het
Atp1a1 T A 3: 101,497,928 (GRCm39) E286D probably benign Het
Bard1 T C 1: 71,106,339 (GRCm39) I429M possibly damaging Het
Bcl7c T C 7: 127,266,155 (GRCm39) R198G possibly damaging Het
Cacna1s T A 1: 136,012,007 (GRCm39) M483K probably damaging Het
Ccdc159 T A 9: 21,845,815 (GRCm39) probably null Het
Cct7 A T 6: 85,443,690 (GRCm39) I353F possibly damaging Het
Cfap57 A G 4: 118,453,036 (GRCm39) Y556H probably damaging Het
Fat1 G C 8: 45,476,072 (GRCm39) R1706T probably benign Het
Fn1 C T 1: 71,647,072 (GRCm39) G1482R probably damaging Het
Gcat T C 15: 78,927,531 (GRCm39) L324P possibly damaging Het
Hspa1a C T 17: 35,190,703 (GRCm39) V67M probably damaging Het
Il22 C T 10: 118,041,529 (GRCm39) R81* probably null Het
Impa1 T C 3: 10,381,094 (GRCm39) T263A probably benign Het
Kif13a T C 13: 46,956,166 (GRCm39) Y609C probably damaging Het
Kmt2e A G 5: 23,706,624 (GRCm39) N1396D probably benign Het
Lrfn1 G A 7: 28,166,294 (GRCm39) G563R possibly damaging Het
Mark1 A C 1: 184,640,632 (GRCm39) probably null Het
Mxd1 G T 6: 86,627,942 (GRCm39) Q199K probably benign Het
Myo3a T A 2: 22,448,227 (GRCm39) Y1N probably damaging Het
Nek3 T C 8: 22,623,107 (GRCm39) E309G probably benign Het
Or10h28 T C 17: 33,487,749 (GRCm39) F17S probably damaging Het
Otoa A T 7: 120,724,788 (GRCm39) Q489L probably damaging Het
Oxsr1 T C 9: 119,076,178 (GRCm39) E376G probably benign Het
Piezo1 C T 8: 123,208,882 (GRCm39) E2494K probably damaging Het
Pkd1l3 A G 8: 110,373,511 (GRCm39) H1349R probably benign Het
Psmd2 A G 16: 20,474,392 (GRCm39) D316G probably benign Het
Pwwp3a T C 10: 80,074,150 (GRCm39) V401A probably damaging Het
Robo4 T A 9: 37,314,801 (GRCm39) C218* probably null Het
Rxfp2 A T 5: 149,979,450 (GRCm39) probably null Het
Slc10a1 A G 12: 81,014,441 (GRCm39) I93T probably damaging Het
Tarbp1 C T 8: 127,154,891 (GRCm39) R1411Q probably damaging Het
Tbl3 C T 17: 24,921,006 (GRCm39) D563N probably damaging Het
Tec A G 5: 72,917,705 (GRCm39) S505P probably damaging Het
Toporsl A T 4: 52,611,750 (GRCm39) R548* probably null Het
Vmn1r39 G A 6: 66,781,479 (GRCm39) Q243* probably null Het
Other mutations in Vmn2r9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00920:Vmn2r9 APN 5 108,995,890 (GRCm39) missense possibly damaging 0.79
IGL00972:Vmn2r9 APN 5 108,996,903 (GRCm39) missense probably benign 0.02
IGL01102:Vmn2r9 APN 5 108,990,811 (GRCm39) splice site probably null
IGL01892:Vmn2r9 APN 5 108,995,700 (GRCm39) missense probably damaging 1.00
IGL02086:Vmn2r9 APN 5 108,995,433 (GRCm39) missense probably damaging 1.00
IGL02118:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02119:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02120:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02121:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02123:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02131:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02132:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02171:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02185:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02186:Vmn2r9 APN 5 108,991,502 (GRCm39) missense probably damaging 1.00
IGL02346:Vmn2r9 APN 5 108,990,850 (GRCm39) missense probably benign 0.07
IGL02508:Vmn2r9 APN 5 108,996,067 (GRCm39) missense possibly damaging 0.70
IGL02815:Vmn2r9 APN 5 108,990,856 (GRCm39) missense possibly damaging 0.69
IGL03077:Vmn2r9 APN 5 108,996,173 (GRCm39) splice site probably benign
IGL03269:Vmn2r9 APN 5 108,995,820 (GRCm39) missense probably damaging 1.00
IGL03293:Vmn2r9 APN 5 108,995,997 (GRCm39) missense probably damaging 1.00
R0112:Vmn2r9 UTSW 5 108,990,991 (GRCm39) missense probably damaging 1.00
R0328:Vmn2r9 UTSW 5 108,995,405 (GRCm39) missense probably benign 0.11
R0382:Vmn2r9 UTSW 5 108,995,463 (GRCm39) missense probably damaging 1.00
R0521:Vmn2r9 UTSW 5 108,996,154 (GRCm39) nonsense probably null
R0975:Vmn2r9 UTSW 5 108,991,169 (GRCm39) missense probably damaging 1.00
R1216:Vmn2r9 UTSW 5 108,995,440 (GRCm39) missense probably damaging 1.00
R1458:Vmn2r9 UTSW 5 108,996,850 (GRCm39) missense probably benign 0.44
R1469:Vmn2r9 UTSW 5 108,991,694 (GRCm39) missense probably benign
R1469:Vmn2r9 UTSW 5 108,991,694 (GRCm39) missense probably benign
R1704:Vmn2r9 UTSW 5 108,994,266 (GRCm39) missense probably damaging 1.00
R1967:Vmn2r9 UTSW 5 108,995,388 (GRCm39) missense probably benign 0.03
R1991:Vmn2r9 UTSW 5 108,994,305 (GRCm39) missense probably damaging 0.99
R2410:Vmn2r9 UTSW 5 108,996,123 (GRCm39) missense probably damaging 1.00
R3419:Vmn2r9 UTSW 5 108,994,299 (GRCm39) missense probably damaging 0.96
R3852:Vmn2r9 UTSW 5 108,995,997 (GRCm39) missense probably damaging 1.00
R3873:Vmn2r9 UTSW 5 108,995,701 (GRCm39) missense probably benign 0.14
R3908:Vmn2r9 UTSW 5 108,995,785 (GRCm39) missense probably benign 0.37
R3921:Vmn2r9 UTSW 5 108,996,921 (GRCm39) missense probably benign
R4156:Vmn2r9 UTSW 5 108,995,743 (GRCm39) missense possibly damaging 0.64
R4477:Vmn2r9 UTSW 5 108,994,143 (GRCm39) missense probably benign
R4478:Vmn2r9 UTSW 5 108,994,143 (GRCm39) missense probably benign
R4544:Vmn2r9 UTSW 5 108,995,551 (GRCm39) missense probably benign 0.00
R4546:Vmn2r9 UTSW 5 108,995,551 (GRCm39) missense probably benign 0.00
R4627:Vmn2r9 UTSW 5 108,995,463 (GRCm39) missense probably damaging 1.00
R5215:Vmn2r9 UTSW 5 108,994,351 (GRCm39) missense probably benign 0.03
R5361:Vmn2r9 UTSW 5 108,995,929 (GRCm39) missense probably damaging 1.00
R5587:Vmn2r9 UTSW 5 108,995,427 (GRCm39) missense probably damaging 1.00
R6054:Vmn2r9 UTSW 5 108,996,126 (GRCm39) missense probably damaging 0.99
R6106:Vmn2r9 UTSW 5 108,992,902 (GRCm39) missense probably benign
R6125:Vmn2r9 UTSW 5 108,990,836 (GRCm39) missense probably benign 0.01
R6137:Vmn2r9 UTSW 5 108,996,882 (GRCm39) missense probably benign 0.00
R6920:Vmn2r9 UTSW 5 108,996,912 (GRCm39) missense possibly damaging 0.72
R7579:Vmn2r9 UTSW 5 108,992,948 (GRCm39) missense probably damaging 1.00
R8683:Vmn2r9 UTSW 5 108,996,873 (GRCm39) missense probably benign
R8964:Vmn2r9 UTSW 5 108,996,031 (GRCm39) missense probably benign 0.05
R9022:Vmn2r9 UTSW 5 108,992,923 (GRCm39) missense possibly damaging 0.90
R9118:Vmn2r9 UTSW 5 108,990,937 (GRCm39) missense probably damaging 0.99
R9125:Vmn2r9 UTSW 5 108,996,047 (GRCm39) missense
R9240:Vmn2r9 UTSW 5 108,996,099 (GRCm39) missense possibly damaging 0.78
R9327:Vmn2r9 UTSW 5 108,996,841 (GRCm39) missense probably damaging 0.96
R9412:Vmn2r9 UTSW 5 108,991,484 (GRCm39) missense probably damaging 1.00
R9499:Vmn2r9 UTSW 5 108,995,584 (GRCm39) missense probably damaging 1.00
R9757:Vmn2r9 UTSW 5 108,995,908 (GRCm39) missense possibly damaging 0.87
R9790:Vmn2r9 UTSW 5 108,995,409 (GRCm39) missense probably damaging 0.99
R9791:Vmn2r9 UTSW 5 108,995,409 (GRCm39) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- AAAATTGTGCAGTGCTGTCC -3'
(R):5'- GCAAAGACATGGAATCTGTTTAGC -3'

Sequencing Primer
(F):5'- AAAATTGTGCAGTGCTGTCCATTCC -3'
(R):5'- AGACATGGAATCTGTTTAGCTTTTG -3'
Posted On 2015-04-17