Mutagenetix > Incidental Mutation

Incidental Mutation 'R3916:Obox3'

309736

Institutional Source

Beutler Lab

Gene Symbol

Obox3

Ensembl Gene

ENSMUSG00000066772

Gene Name

oocyte specific homeobox 3

Synonyms

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.139) question?

Stock #

R3916 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

15479825-15639902 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 15627226 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Phenylalanine at position 38 (C38F)

Ref Sequence

ENSEMBL: ENSMUSP00000134531 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000086122] [ENSMUST00000095217] [ENSMUST00000173395] [ENSMUST00000173912] [ENSMUST00000174151] [ENSMUST00000174443] [ENSMUST00000174842]

AlphaFold

Q3UT54

Predicted Effect

probably benign
Transcript: ENSMUST00000086122
AA Change: C38F

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000083291
Gene: ENSMUSG00000066772
AA Change: C38F

Domain	Start	End	E-Value	Type
HOX	94	156	1.84e-16	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000095217
AA Change: C38F

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000092842
Gene: ENSMUSG00000066772
AA Change: C38F

Domain	Start	End	E-Value	Type
HOX	94	156	1.84e-16	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000173395
AA Change: C38F

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000133788
Gene: ENSMUSG00000066772
AA Change: C38F

Domain	Start	End	E-Value	Type
HOX	94	156	1.84e-16	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000173912
AA Change: C38F

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000133427
Gene: ENSMUSG00000066772
AA Change: C38F

Domain	Start	End	E-Value	Type
HOX	94	156	1.84e-16	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000174151
AA Change: C38F

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000133814
Gene: ENSMUSG00000066772
AA Change: C38F

Domain	Start	End	E-Value	Type
HOX	94	156	1.84e-16	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000174443
AA Change: C38F

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000134531
Gene: ENSMUSG00000066772
AA Change: C38F

Domain	Start	End	E-Value	Type
HOX	94	156	1.84e-16	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000174842
AA Change: C38F

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000134526
Gene: ENSMUSG00000066772
AA Change: C38F

Domain	Start	End	E-Value	Type
HOX	94	151	1.46e-10	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000182148

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.4%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4932414N04Rik	T	G	2: 68,731,985 (GRCm38)	F319V	possibly damaging	Het
Acad12	A	G	5: 121,599,214 (GRCm38)	V498A	probably damaging	Het
Adam19	A	G	11: 46,060,935 (GRCm38)	E37G	probably benign	Het
Anks3	A	G	16: 4,947,279 (GRCm38)	Y423H	probably damaging	Het
Arfgef1	A	T	1: 10,189,443 (GRCm38)	V600D	probably benign	Het
Arhgef18	T	C	8: 3,454,197 (GRCm38)	F939L	probably benign	Het
Arhgef2	A	G	3: 88,633,033 (GRCm38)	N127S	probably damaging	Het
Arid1b	A	G	17: 5,342,653 (GRCm38)	S2100G	probably benign	Het
Atp1b2	A	G	11: 69,603,075 (GRCm38)	V93A	probably damaging	Het
Atrnl1	T	C	19: 57,935,652 (GRCm38)	V1283A	possibly damaging	Het
Bpifb5	A	C	2: 154,228,181 (GRCm38)	K184Q	probably benign	Het
Cadps	C	T	14: 12,457,702 (GRCm38)	A1060T	probably benign	Het
Cant1	A	G	11: 118,408,746 (GRCm38)	V259A	probably damaging	Het
Ccdc89	A	G	7: 90,426,825 (GRCm38)	D81G	probably damaging	Het
Cd109	CATTTATTTATTTATTTATTTATTTATTTATTTAT	CATTTATTTATTTATTTATTTATTTATTTATTTATTTAT	9: 78,712,500 (GRCm38)		probably benign	Het
Cntnap4	C	G	8: 112,875,533 (GRCm38)	P1190A	probably benign	Het
Colgalt2	T	A	1: 152,508,611 (GRCm38)	Y567*	probably null	Het
Cyp4f18	A	T	8: 71,996,037 (GRCm38)	F256Y	probably benign	Het
Ddx41	G	A	13: 55,534,480 (GRCm38)	R205W	possibly damaging	Het
Dop1a	G	A	9: 86,521,133 (GRCm38)	R1462H	probably damaging	Het
Dync1i2	A	G	2: 71,249,372 (GRCm38)	T377A	probably damaging	Het
F2	G	A	2: 91,625,488 (GRCm38)	T600M	probably damaging	Het
Fam91a1	C	T	15: 58,430,734 (GRCm38)	H308Y	probably damaging	Het
Fkbp2	C	A	19: 6,978,557 (GRCm38)		probably null	Het
Gabarapl2	T	A	8: 111,952,396 (GRCm38)	F115L	probably benign	Het
Heatr3	T	G	8: 88,150,371 (GRCm38)		probably null	Het
Ifi204	T	G	1: 173,755,775 (GRCm38)	K292N	possibly damaging	Het
Itpkc	A	T	7: 27,228,303 (GRCm38)	I62N	probably benign	Het
Kcnab1	G	A	3: 65,304,164 (GRCm38)		probably null	Het
Krt88	G	A	15: 101,452,928 (GRCm38)		probably null	Het
Larp4	C	T	15: 99,990,403 (GRCm38)	T107I	probably benign	Het
Lmo7	T	C	14: 101,929,342 (GRCm38)		probably benign	Het
Lrrc37a	T	C	11: 103,455,518 (GRCm38)	Y3174C	possibly damaging	Het
Lyzl4	T	A	9: 121,583,035 (GRCm38)	D105V	probably damaging	Het
Mst1	A	G	9: 108,084,295 (GRCm38)	I575V	probably benign	Het
Myh7	C	A	14: 54,974,046 (GRCm38)	E1555D	probably damaging	Het
Nwd1	T	A	8: 72,667,811 (GRCm38)	C608*	probably null	Het
P4ha2	A	G	11: 54,126,248 (GRCm38)	D441G	probably benign	Het
Pcdhb14	A	T	18: 37,448,545 (GRCm38)	I235F	possibly damaging	Het
Rasgrf2	A	G	13: 92,030,788 (GRCm38)	V259A	probably damaging	Het
Scn1a	T	C	2: 66,277,613 (GRCm38)	T1590A	probably damaging	Het
Sdk1	T	A	5: 142,051,244 (GRCm38)	D817E	probably damaging	Het
Sema3b	A	G	9: 107,600,458 (GRCm38)	F482S	probably damaging	Het
Slc35a5	G	C	16: 45,158,158 (GRCm38)		probably benign	Het
Slc6a3	A	G	13: 73,562,308 (GRCm38)	I346V	probably benign	Het
Slu7	G	T	11: 43,440,684 (GRCm38)		probably null	Het
Spns1	A	T	7: 126,371,539 (GRCm38)		probably null	Het
Supv3l1	T	C	10: 62,449,420 (GRCm38)	D89G	possibly damaging	Het
Taf1c	G	A	8: 119,600,505 (GRCm38)	R412W	probably damaging	Het
Tctn3	T	A	19: 40,607,649 (GRCm38)	T305S	possibly damaging	Het
Tekt1	A	G	11: 72,345,748 (GRCm38)	I296T	possibly damaging	Het
Tet2	T	C	3: 133,486,055 (GRCm38)	K873E	possibly damaging	Het
Thada	G	A	17: 84,441,782 (GRCm38)	A587V	possibly damaging	Het
Tmprss15	T	A	16: 78,985,996 (GRCm38)	N712Y	probably damaging	Het
Tnks	A	G	8: 34,853,361 (GRCm38)	S719P	probably damaging	Het
Tnrc6a	A	C	7: 123,181,384 (GRCm38)	Q1332H	probably damaging	Het
Trpv3	A	G	11: 73,283,734 (GRCm38)	D309G	possibly damaging	Het
Tti2	A	G	8: 31,153,519 (GRCm38)	K221E	possibly damaging	Het
Uba5	A	T	9: 104,054,190 (GRCm38)	C227S	probably damaging	Het
Ugcg	C	T	4: 59,207,798 (GRCm38)	P46S	probably benign	Het
Unc80	T	C	1: 66,677,495 (GRCm38)	C2925R	probably benign	Het
Vmn2r83	G	A	10: 79,478,910 (GRCm38)	G331R	probably benign	Het
Xirp2	G	T	2: 67,511,422 (GRCm38)	V1336F	probably benign	Het
Zbed5	T	C	5: 129,902,277 (GRCm38)	Y356H	possibly damaging	Het

Other mutations in Obox3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01943:Obox3	APN	7	15,626,852 (GRCm38)	missense	probably benign	0.00
IGL02601:Obox3	APN	7	15,626,923 (GRCm38)	missense	probably damaging	0.99
IGL02978:Obox3	APN	7	15,626,253 (GRCm38)	missense	probably benign	0.11
IGL03088:Obox3	APN	7	15,627,002 (GRCm38)	splice site	probably benign
IGL03178:Obox3	APN	7	15,627,277 (GRCm38)	missense	probably benign	0.12
IGL03219:Obox3	APN	7	15,625,878 (GRCm38)	missense	probably damaging	0.99
IGL03373:Obox3	APN	7	15,625,790 (GRCm38)	missense	probably benign	0.01
R0119:Obox3	UTSW	7	15,626,327 (GRCm38)	critical splice acceptor site	probably null
R1471:Obox3	UTSW	7	15,626,950 (GRCm38)	missense	probably benign	0.01
R4072:Obox3	UTSW	7	15,625,799 (GRCm38)	missense	possibly damaging	0.92
R4073:Obox3	UTSW	7	15,625,799 (GRCm38)	missense	possibly damaging	0.92
R4075:Obox3	UTSW	7	15,625,799 (GRCm38)	missense	possibly damaging	0.92
R4076:Obox3	UTSW	7	15,625,799 (GRCm38)	missense	possibly damaging	0.92
R4712:Obox3	UTSW	7	15,626,839 (GRCm38)	missense	probably benign	0.04
R4751:Obox3	UTSW	7	15,625,692 (GRCm38)	critical splice donor site	probably null
R4868:Obox3	UTSW	7	15,627,310 (GRCm38)	missense	probably damaging	1.00
R5151:Obox3	UTSW	7	15,626,248 (GRCm38)	missense	probably damaging	1.00
R5290:Obox3	UTSW	7	15,626,849 (GRCm38)	missense	probably benign	0.03
R5399:Obox3	UTSW	7	15,626,288 (GRCm38)	missense	probably benign	0.00
R5882:Obox3	UTSW	7	15,626,968 (GRCm38)	missense	probably benign	0.17
R6147:Obox3	UTSW	7	15,626,001 (GRCm38)	missense	probably damaging	0.99
R6378:Obox3	UTSW	7	15,626,102 (GRCm38)	missense	probably benign	0.00
R7221:Obox3	UTSW	7	15,626,058 (GRCm38)	missense	probably benign	0.01
R7314:Obox3	UTSW	7	15,627,154 (GRCm38)	missense	possibly damaging	0.50
R8124:Obox3	UTSW	7	15,589,949 (GRCm38)	splice site	probably null
R8711:Obox3	UTSW	7	15,626,223 (GRCm38)	missense	probably benign	0.44
R8825:Obox3	UTSW	7	15,627,301 (GRCm38)	missense	possibly damaging	0.94
Z1176:Obox3	UTSW	7	15,626,224 (GRCm38)	missense	probably benign	0.16

Predicted Primers

PCR Primer
(F):5'- TCTAATGACTTGGATGCCCCG -3'
(R):5'- ACAAATGCTGGGTAGGTGTG -3'

Sequencing Primer
(F):5'- TTGGATGCCCCGAGAGTCTTC -3'
(R):5'- ATGGGTAAATGGGTGCTCTC -3'

Posted On

2015-04-17