Mutagenetix > Incidental Mutation

Incidental Mutation 'R3916:Larp4'

309776

Institutional Source

Beutler Lab

Gene Symbol

Larp4

Ensembl Gene

ENSMUSG00000023025

Gene Name

La ribonucleoprotein domain family, member 4

Synonyms

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.441) question?

Stock #

R3916 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

99970065-100016358 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 99990403 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Isoleucine at position 107 (T107I)

Ref Sequence

ENSEMBL: ENSMUSP00000155661 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000057632] [ENSMUST00000100206] [ENSMUST00000230521] [ENSMUST00000230956] [ENSMUST00000231160]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000057632
AA Change: T165I

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000086964
Gene: ENSMUSG00000023025
AA Change: T165I

Domain	Start	End	E-Value	Type
LA	112	190	2.44e-40	SMART
RRM	195	265	3.28e-2	SMART
low complexity region	375	388	N/A	INTRINSIC
low complexity region	433	453	N/A	INTRINSIC
low complexity region	457	470	N/A	INTRINSIC
low complexity region	651	663	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000100206
AA Change: T166I

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000097780
Gene: ENSMUSG00000023025
AA Change: T166I

Domain	Start	End	E-Value	Type
LA	113	191	2.44e-40	SMART
RRM	196	266	3.28e-2	SMART
low complexity region	376	389	N/A	INTRINSIC
low complexity region	434	454	N/A	INTRINSIC
low complexity region	458	471	N/A	INTRINSIC
low complexity region	652	664	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000229553

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000229891

Predicted Effect

probably benign
Transcript: ENSMUST00000230521

Predicted Effect

probably benign
Transcript: ENSMUST00000230956
AA Change: T167I

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

Predicted Effect

probably benign
Transcript: ENSMUST00000231160
AA Change: T107I

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.4%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4932414N04Rik	T	G	2: 68,731,985	F319V	possibly damaging	Het
Acad12	A	G	5: 121,599,214	V498A	probably damaging	Het
Adam19	A	G	11: 46,060,935	E37G	probably benign	Het
Anks3	A	G	16: 4,947,279	Y423H	probably damaging	Het
Arfgef1	A	T	1: 10,189,443	V600D	probably benign	Het
Arhgef18	T	C	8: 3,454,197	F939L	probably benign	Het
Arhgef2	A	G	3: 88,633,033	N127S	probably damaging	Het
Arid1b	A	G	17: 5,342,653	S2100G	probably benign	Het
Atp1b2	A	G	11: 69,603,075	V93A	probably damaging	Het
Atrnl1	T	C	19: 57,935,652	V1283A	possibly damaging	Het
Bpifb5	A	C	2: 154,228,181	K184Q	probably benign	Het
Cadps	C	T	14: 12,457,702	A1060T	probably benign	Het
Cant1	A	G	11: 118,408,746	V259A	probably damaging	Het
Ccdc89	A	G	7: 90,426,825	D81G	probably damaging	Het
Cd109	CATTTATTTATTTATTTATTTATTTATTTATTTAT	CATTTATTTATTTATTTATTTATTTATTTATTTATTTAT	9: 78,712,500		probably benign	Het
Cntnap4	C	G	8: 112,875,533	P1190A	probably benign	Het
Colgalt2	T	A	1: 152,508,611	Y567*	probably null	Het
Cyp4f18	A	T	8: 71,996,037	F256Y	probably benign	Het
Ddx41	G	A	13: 55,534,480	R205W	possibly damaging	Het
Dopey1	G	A	9: 86,521,133	R1462H	probably damaging	Het
Dync1i2	A	G	2: 71,249,372	T377A	probably damaging	Het
F2	G	A	2: 91,625,488	T600M	probably damaging	Het
Fam91a1	C	T	15: 58,430,734	H308Y	probably damaging	Het
Fkbp2	C	A	19: 6,978,557		probably null	Het
Gabarapl2	T	A	8: 111,952,396	F115L	probably benign	Het
Heatr3	T	G	8: 88,150,371		probably null	Het
Ifi204	T	G	1: 173,755,775	K292N	possibly damaging	Het
Itpkc	A	T	7: 27,228,303	I62N	probably benign	Het
Kcnab1	G	A	3: 65,304,164		probably null	Het
Krt88	G	A	15: 101,452,928		probably null	Het
Lmo7	T	C	14: 101,929,342		probably benign	Het
Lrrc37a	T	C	11: 103,455,518	Y3174C	possibly damaging	Het
Lyzl4	T	A	9: 121,583,035	D105V	probably damaging	Het
Mst1	A	G	9: 108,084,295	I575V	probably benign	Het
Myh7	C	A	14: 54,974,046	E1555D	probably damaging	Het
Nwd1	T	A	8: 72,667,811	C608*	probably null	Het
Obox3	C	A	7: 15,627,226	C38F	probably benign	Het
P4ha2	A	G	11: 54,126,248	D441G	probably benign	Het
Pcdhb14	A	T	18: 37,448,545	I235F	possibly damaging	Het
Rasgrf2	A	G	13: 92,030,788	V259A	probably damaging	Het
Scn1a	T	C	2: 66,277,613	T1590A	probably damaging	Het
Sdk1	T	A	5: 142,051,244	D817E	probably damaging	Het
Sema3b	A	G	9: 107,600,458	F482S	probably damaging	Het
Slc35a5	G	C	16: 45,158,158		probably benign	Het
Slc6a3	A	G	13: 73,562,308	I346V	probably benign	Het
Slu7	G	T	11: 43,440,684		probably null	Het
Spns1	A	T	7: 126,371,539		probably null	Het
Supv3l1	T	C	10: 62,449,420	D89G	possibly damaging	Het
Taf1c	G	A	8: 119,600,505	R412W	probably damaging	Het
Tctn3	T	A	19: 40,607,649	T305S	possibly damaging	Het
Tekt1	A	G	11: 72,345,748	I296T	possibly damaging	Het
Tet2	T	C	3: 133,486,055	K873E	possibly damaging	Het
Thada	G	A	17: 84,441,782	A587V	possibly damaging	Het
Tmprss15	T	A	16: 78,985,996	N712Y	probably damaging	Het
Tnks	A	G	8: 34,853,361	S719P	probably damaging	Het
Tnrc6a	A	C	7: 123,181,384	Q1332H	probably damaging	Het
Trpv3	A	G	11: 73,283,734	D309G	possibly damaging	Het
Tti2	A	G	8: 31,153,519	K221E	possibly damaging	Het
Uba5	A	T	9: 104,054,190	C227S	probably damaging	Het
Ugcg	C	T	4: 59,207,798	P46S	probably benign	Het
Unc80	T	C	1: 66,677,495	C2925R	probably benign	Het
Vmn2r83	G	A	10: 79,478,910	G331R	probably benign	Het
Xirp2	G	T	2: 67,511,422	V1336F	probably benign	Het
Zbed5	T	C	5: 129,902,277	Y356H	possibly damaging	Het

Other mutations in Larp4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00503:Larp4	APN	15	99987421	missense	probably damaging	0.98
IGL01668:Larp4	APN	15	99987474	missense	probably damaging	1.00
IGL01687:Larp4	APN	15	99996488	missense	probably damaging	1.00
IGL02105:Larp4	APN	15	99986071	missense	probably damaging	1.00
IGL02676:Larp4	APN	15	99990421	missense	possibly damaging	0.94
IGL03286:Larp4	APN	15	99986086	missense	probably damaging	1.00
Skewer	UTSW	15	100007730	critical splice donor site	probably null
R1076:Larp4	UTSW	15	99997430	missense	probably benign	0.00
R1996:Larp4	UTSW	15	99984963	missense	probably damaging	1.00
R2183:Larp4	UTSW	15	100011897	missense	probably benign	0.16
R2260:Larp4	UTSW	15	99997396	missense	possibly damaging	0.95
R3777:Larp4	UTSW	15	99990357	missense	probably damaging	1.00
R3962:Larp4	UTSW	15	100012145	missense	probably damaging	1.00
R5059:Larp4	UTSW	15	100005290	missense	probably damaging	1.00
R5081:Larp4	UTSW	15	99973017	intron	probably benign
R5104:Larp4	UTSW	15	99986083	missense	probably damaging	1.00
R5409:Larp4	UTSW	15	99986064	missense	probably damaging	0.98
R5436:Larp4	UTSW	15	99986114	missense	probably damaging	0.98
R6895:Larp4	UTSW	15	100007730	critical splice donor site	probably null
R7316:Larp4	UTSW	15	100001017	missense	probably benign
R7483:Larp4	UTSW	15	99991778	missense	probably benign	0.01
R7510:Larp4	UTSW	15	99993377	missense	probably benign	0.07
R8131:Larp4	UTSW	15	99994689	missense	probably damaging	0.99
R8263:Larp4	UTSW	15	99986080	missense	probably benign	0.00
R8322:Larp4	UTSW	15	100010356	missense	probably benign	0.01
R8671:Larp4	UTSW	15	100010458	missense	probably benign	0.01
R9059:Larp4	UTSW	15	99991812	missense	probably benign	0.26
R9151:Larp4	UTSW	15	99990324	missense	possibly damaging	0.88
R9444:Larp4	UTSW	15	100011926	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AAACTCATAATCTGCCTAGGAGG -3'
(R):5'- ACACTTGCTATGTGAACAAGC -3'

Sequencing Primer
(F):5'- GGATTTCTGAGTTCAAGGCCAACC -3'
(R):5'- CTTGCTATGTGAACAAGCAAAAACG -3'

Posted On

2015-04-17