Mutagenetix > Incidental Mutation

Incidental Mutation 'R3889:Tacr2'

310196

Institutional Source

Beutler Lab

Gene Symbol

Tacr2

Ensembl Gene

ENSMUSG00000020081

Gene Name

tachykinin receptor 2

Synonyms

Tac2r

MMRRC Submission

040801-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.072) question?

Stock #

R3889 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

62088217-62101769 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 62100865 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Tyrosine at position 325 (C325Y)

Ref Sequence

ENSEMBL: ENSMUSP00000020278 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020278] [ENSMUST00000072357] [ENSMUST00000099691] [ENSMUST00000116238] [ENSMUST00000130422]

AlphaFold

P30549

Predicted Effect

probably damaging
Transcript: ENSMUST00000020278
AA Change: C325Y

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000020278
Gene: ENSMUSG00000020081
AA Change: C325Y

Domain	Start	End	E-Value	Type
Pfam:7TM_GPCR_Srsx	44	322	1.9e-11	PFAM
Pfam:7tm_1	50	307	4e-58	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000072357

SMART Domains

Protein: ENSMUSP00000072195
Gene: ENSMUSG00000037012

Domain	Start	End	E-Value	Type
Pfam:Hexokinase_1	25	224	1.2e-70	PFAM
Pfam:Hexokinase_2	229	486	8e-79	PFAM
Pfam:Hexokinase_1	496	695	7e-76	PFAM
Pfam:Hexokinase_2	700	934	4.2e-85	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000099691

SMART Domains

Protein: ENSMUSP00000097282
Gene: ENSMUSG00000037012

Domain	Start	End	E-Value	Type
Pfam:Hexokinase_1	16	221	1.9e-86	PFAM
Pfam:Hexokinase_2	223	462	1e-102	PFAM
Pfam:Hexokinase_1	464	669	1.1e-90	PFAM
Pfam:Hexokinase_2	671	910	2.2e-109	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000116238

SMART Domains

Protein: ENSMUSP00000111946
Gene: ENSMUSG00000037012

Domain	Start	End	E-Value	Type
Pfam:Hexokinase_1	21	225	1.3e-85	PFAM
Pfam:Hexokinase_2	227	357	3.6e-56	PFAM
Pfam:Hexokinase_2	362	489	9.3e-41	PFAM
Pfam:Hexokinase_1	491	696	2e-90	PFAM
Pfam:Hexokinase_2	698	937	3.8e-109	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000130422

SMART Domains

Protein: ENSMUSP00000118601
Gene: ENSMUSG00000037012

Domain	Start	End	E-Value	Type
Pfam:Hexokinase_1	16	220	1.4e-85	PFAM
Pfam:Hexokinase_2	222	461	1e-102	PFAM
Pfam:Hexokinase_1	463	668	1.1e-90	PFAM
Pfam:Hexokinase_2	670	909	2.2e-109	PFAM

Meta Mutation Damage Score

0.7764

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.4%
20x: 95.5%

Validation Efficiency

94% (51/54)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to a family of genes that function as receptors for tachykinins. Receptor affinities are specified by variations in the 5'-end of the sequence. The receptors belonging to this family are characterized by interactions with G proteins and 7 hydrophobic transmembrane regions. This gene encodes the receptor for the tachykinin neuropeptide substance K, also referred to as neurokinin A. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933407L21Rik	T	A	1: 85,868,273 (GRCm39)		probably null	Het
7530416G11Rik	A	G	15: 85,378,292 (GRCm39)	F117S	unknown	Het
Adamts5	A	G	16: 85,665,009 (GRCm39)	W652R	probably damaging	Het
Adamtsl4	G	T	3: 95,588,167 (GRCm39)	Q607K	probably damaging	Het
Atm	T	C	9: 53,417,936 (GRCm39)		probably benign	Het
Atp6v0a2	G	A	5: 124,777,203 (GRCm39)	R168Q	probably damaging	Het
B930094E09Rik	G	A	18: 31,742,742 (GRCm39)	S59N	unknown	Het
Baiap2l1	T	C	5: 144,215,345 (GRCm39)	T387A	possibly damaging	Het
Cct3	A	T	3: 88,228,334 (GRCm39)	Q472L	probably benign	Het
Chd3	C	T	11: 69,250,011 (GRCm39)	E623K	probably damaging	Het
Cps1	C	A	1: 67,204,659 (GRCm39)	T493K	possibly damaging	Het
Dclre1a	A	T	19: 56,533,752 (GRCm39)	C263S	probably benign	Het
Dmxl1	T	A	18: 50,011,326 (GRCm39)	M1161K	probably damaging	Het
Eif2ak1	A	T	5: 143,821,479 (GRCm39)	Q265L	probably benign	Het
Elp1	G	A	4: 56,759,852 (GRCm39)	R1138C	probably damaging	Het
Epha3	A	G	16: 63,431,327 (GRCm39)	F526L	probably damaging	Het
Etl4	C	T	2: 20,534,772 (GRCm39)	Q76*	probably null	Het
Fat2	C	A	11: 55,172,589 (GRCm39)	G2708V	probably damaging	Het
Fgd6	G	A	10: 93,925,499 (GRCm39)	E853K	probably damaging	Het
Fn1	T	C	1: 71,679,465 (GRCm39)	Y511C	probably damaging	Het
Foxd2	T	C	4: 114,765,483 (GRCm39)	H179R	unknown	Het
Fsd1	A	G	17: 56,300,893 (GRCm39)	K251E	probably benign	Het
Gjc3	T	A	5: 137,956,105 (GRCm39)	N60I	possibly damaging	Het
Gpc5	T	C	14: 115,607,472 (GRCm39)	M358T	probably benign	Het
H6pd	T	A	4: 150,080,230 (GRCm39)	Y197F	possibly damaging	Het
Hip1r	C	T	5: 124,139,854 (GRCm39)	R986*	probably null	Het
Igkv9-120	A	G	6: 68,027,362 (GRCm39)	D92G	probably damaging	Het
Il6	A	G	5: 30,223,066 (GRCm39)	K128E	possibly damaging	Het
Irf4	T	C	13: 30,945,473 (GRCm39)		probably benign	Het
Lcor	T	A	19: 41,546,795 (GRCm39)	S126R	probably damaging	Het
Ltbp2	A	G	12: 84,831,681 (GRCm39)		probably benign	Het
Pcmt1	C	T	10: 7,524,814 (GRCm39)		probably null	Het
Plekhm2	C	T	4: 141,369,301 (GRCm39)		probably benign	Het
Prkca	C	T	11: 107,870,066 (GRCm39)	G450R	probably damaging	Het
Psme3	C	A	11: 101,210,282 (GRCm39)	P82T	probably damaging	Het
Rgs11	T	C	17: 26,426,561 (GRCm39)	I262T	probably damaging	Het
Rreb1	G	T	13: 38,077,941 (GRCm39)	R51L	probably damaging	Het
Rsf1	GGCG	GGCGACGGCTGCG	7: 97,229,113 (GRCm39)		probably benign	Het
Serpina1e	A	T	12: 103,917,132 (GRCm39)	V179E	probably damaging	Het
Sgo2b	T	C	8: 64,380,777 (GRCm39)	Q685R	possibly damaging	Het
Slc15a2	A	G	16: 36,602,666 (GRCm39)	F65S	probably damaging	Het
Slc25a45	C	T	19: 5,930,661 (GRCm39)		probably benign	Het
Snapc4	G	A	2: 26,255,510 (GRCm39)	Q1005*	probably null	Het
Spen	A	G	4: 141,205,192 (GRCm39)	V1145A	unknown	Het
Stub1	T	C	17: 26,050,276 (GRCm39)		probably benign	Het
Taar8a	A	G	10: 23,952,923 (GRCm39)	I176V	probably benign	Het
Tbc1d17	T	A	7: 44,495,362 (GRCm39)	H154L	probably damaging	Het
Tll1	A	T	8: 64,658,258 (GRCm39)	C54S	possibly damaging	Het
Tpsb2	G	A	17: 25,586,457 (GRCm39)	V181I	probably damaging	Het
Trak1	A	G	9: 121,274,939 (GRCm39)	N146S	probably null	Het
Vmn1r177	T	C	7: 23,565,289 (GRCm39)	I196V	possibly damaging	Het
Zfp820	T	C	17: 22,037,877 (GRCm39)	I484V	probably benign	Het

Other mutations in Tacr2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02756:Tacr2	APN	10	62,097,469 (GRCm39)	splice site	probably benign
R1538:Tacr2	UTSW	10	62,097,106 (GRCm39)	critical splice donor site	probably null
R3161:Tacr2	UTSW	10	62,101,024 (GRCm39)	missense	probably benign	0.16
R3162:Tacr2	UTSW	10	62,101,024 (GRCm39)	missense	probably benign	0.16
R3162:Tacr2	UTSW	10	62,101,024 (GRCm39)	missense	probably benign	0.16
R4193:Tacr2	UTSW	10	62,088,958 (GRCm39)	missense	probably damaging	1.00
R4801:Tacr2	UTSW	10	62,097,327 (GRCm39)	missense	probably damaging	1.00
R4802:Tacr2	UTSW	10	62,097,327 (GRCm39)	missense	probably damaging	1.00
R5382:Tacr2	UTSW	10	62,097,276 (GRCm39)	missense	probably damaging	1.00
R5751:Tacr2	UTSW	10	62,088,769 (GRCm39)	missense	probably damaging	0.98
R7064:Tacr2	UTSW	10	62,097,276 (GRCm39)	missense	probably damaging	1.00
R7412:Tacr2	UTSW	10	62,097,427 (GRCm39)	nonsense	probably null
R8335:Tacr2	UTSW	10	62,100,946 (GRCm39)	missense	probably benign	0.41
R8723:Tacr2	UTSW	10	62,094,107 (GRCm39)	missense	probably damaging	1.00
R8755:Tacr2	UTSW	10	62,088,733 (GRCm39)	missense	possibly damaging	0.94
Z1177:Tacr2	UTSW	10	62,094,023 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ATTGTGCATCTCTCCACACAG -3'
(R):5'- AGACAAGCTCAAGACTTCAGG -3'

Sequencing Primer
(F):5'- ACACAGCCCCGAGTTGTTGAG -3'
(R):5'- AGCTCAAGACTTCAGGGTCCAG -3'

Posted On

2015-04-17