Mutagenetix > Incidental Mutation

Incidental Mutation 'R3907:Tmcc2'

310225

Institutional Source

Beutler Lab

Gene Symbol

Tmcc2

Ensembl Gene

ENSMUSG00000042066

Gene Name

transmembrane and coiled-coil domains 2

Synonyms

1110063G11Rik

MMRRC Submission

040908-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.128) question?

Stock #

R3907 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

132284053-132319019 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 132288376 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 359 (D359G)

Ref Sequence

ENSEMBL: ENSMUSP00000118844 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045473] [ENSMUST00000132435] [ENSMUST00000142609]

AlphaFold

Q80W04

Predicted Effect

probably damaging
Transcript: ENSMUST00000045473
AA Change: D437G

PolyPhen 2 Score 0.966 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000038369
Gene: ENSMUSG00000042066
AA Change: D437G

Domain	Start	End	E-Value	Type
low complexity region	7	25	N/A	INTRINSIC
low complexity region	89	99	N/A	INTRINSIC
low complexity region	100	112	N/A	INTRINSIC
low complexity region	164	183	N/A	INTRINSIC
low complexity region	253	267	N/A	INTRINSIC
Pfam:Tmemb_cc2	283	694	6.3e-178	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125439

Predicted Effect

probably damaging
Transcript: ENSMUST00000132435
AA Change: D359G

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000118844
Gene: ENSMUSG00000042066
AA Change: D359G

Domain	Start	End	E-Value	Type
low complexity region	11	21	N/A	INTRINSIC
low complexity region	22	34	N/A	INTRINSIC
low complexity region	86	105	N/A	INTRINSIC
low complexity region	175	189	N/A	INTRINSIC
Pfam:Tmemb_cc2	203	617	1.1e-193	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136828

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138717

Predicted Effect

possibly damaging
Transcript: ENSMUST00000142609
AA Change: D202G

PolyPhen 2 Score 0.807 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000115721
Gene: ENSMUSG00000042066
AA Change: D202G

Domain	Start	End	E-Value	Type
low complexity region	18	32	N/A	INTRINSIC
Pfam:Tmemb_cc2	46	460	2.2e-194	PFAM

Meta Mutation Damage Score

0.8584

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.5%
20x: 95.5%

Validation Efficiency

97% (56/58)

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts3	C	A	5: 90,009,214 (GRCm39)	G150C	probably damaging	Het
Ampd3	A	G	7: 110,392,877 (GRCm39)	D215G	possibly damaging	Het
Ank2	A	G	3: 126,810,547 (GRCm39)	L513P	probably damaging	Het
Apba1	T	C	19: 23,914,870 (GRCm39)	I690T	probably damaging	Het
Arid1a	T	C	4: 133,420,223 (GRCm39)		probably benign	Het
Arsi	G	A	18: 61,049,723 (GRCm39)	G202E	probably benign	Het
Asns	C	T	6: 7,682,270 (GRCm39)		probably null	Het
Aspg	T	A	12: 112,078,693 (GRCm39)	Y57*	probably null	Het
Asph	T	C	4: 9,474,934 (GRCm39)	K680R	probably benign	Het
Atp2b4	A	T	1: 133,666,324 (GRCm39)	S243T	probably damaging	Het
Cacna1s	T	A	1: 136,012,007 (GRCm39)	M483K	probably damaging	Het
Car4	G	A	11: 84,855,183 (GRCm39)	V141M	probably damaging	Het
Cct4	A	G	11: 22,951,560 (GRCm39)	I376V	probably benign	Het
Chrm4	C	T	2: 91,758,084 (GRCm39)	A164V	probably damaging	Het
Csf3r	A	T	4: 125,928,240 (GRCm39)	D291V	probably benign	Het
Dcaf6	A	T	1: 165,251,949 (GRCm39)	C58*	probably null	Het
Ddi2	T	C	4: 141,411,592 (GRCm39)	D440G	probably benign	Het
Defb4	A	T	8: 19,251,277 (GRCm39)	Q48L	possibly damaging	Het
Dnaaf9	C	T	2: 130,578,496 (GRCm39)	A663T	probably damaging	Het
Duox2	C	T	2: 122,113,541 (GRCm39)		probably null	Het
E130308A19Rik	C	T	4: 59,752,393 (GRCm39)	T502I	probably benign	Het
Ephb1	A	G	9: 101,878,925 (GRCm39)	C522R	probably benign	Het
Fam76a	T	C	4: 132,643,432 (GRCm39)	K101E	probably damaging	Het
Fat1	G	C	8: 45,476,072 (GRCm39)	R1706T	probably benign	Het
Fn1	C	T	1: 71,647,072 (GRCm39)	G1482R	probably damaging	Het
Gm10110	T	C	14: 90,135,583 (GRCm39)		noncoding transcript	Het
Gphn	T	A	12: 78,540,716 (GRCm39)		probably benign	Het
Hars1	A	T	18: 36,915,769 (GRCm39)	D48E	probably benign	Het
Hmgcll1	G	A	9: 75,979,943 (GRCm39)	R111H	probably benign	Het
Ighv3-4	A	G	12: 114,217,538 (GRCm39)	S18P	probably damaging	Het
Iws1	G	A	18: 32,212,973 (GRCm39)	E134K	possibly damaging	Het
Kcnj4	G	T	15: 79,369,946 (GRCm39)	H11Q	probably benign	Het
Krt16	A	G	11: 100,137,989 (GRCm39)	V329A	possibly damaging	Het
Loxhd1	A	T	18: 77,496,464 (GRCm39)	M1575L	possibly damaging	Het
Mapkapk2	A	T	1: 130,984,651 (GRCm39)	S234T	probably damaging	Het
Mxd1	G	T	6: 86,627,942 (GRCm39)	Q199K	probably benign	Het
Nlrp5	T	A	7: 23,133,071 (GRCm39)	D905E	possibly damaging	Het
Or4c117	A	C	2: 88,955,927 (GRCm39)	Y49*	probably null	Het
Or6z7	A	T	7: 6,483,678 (GRCm39)	V159D	probably damaging	Het
Otoa	A	T	7: 120,724,788 (GRCm39)	Q489L	probably damaging	Het
Pced1b	T	C	15: 97,282,431 (GRCm39)	S157P	probably damaging	Het
Ppp1r16b	T	C	2: 158,603,410 (GRCm39)	I345T	probably benign	Het
Prrt4	G	T	6: 29,177,173 (GRCm39)	L199M	probably damaging	Het
Ptpn6	T	C	6: 124,702,239 (GRCm39)	D347G	possibly damaging	Het
Pwwp3a	T	C	10: 80,074,150 (GRCm39)	V401A	probably damaging	Het
Rcan1	A	G	16: 92,262,917 (GRCm39)		probably benign	Het
Rif1	C	T	2: 52,002,557 (GRCm39)	L2004F	probably benign	Het
Rnf185	A	G	11: 3,376,681 (GRCm39)		probably benign	Het
Shank2	C	T	7: 143,963,313 (GRCm39)	P307L	probably damaging	Het
Slc19a3	G	A	1: 82,992,534 (GRCm39)	R396C	possibly damaging	Het
Stn1	T	C	19: 47,496,262 (GRCm39)	D321G	probably damaging	Het
Taar7a	T	C	10: 23,868,457 (GRCm39)	Y308C	probably benign	Het
Tespa1	T	C	10: 130,192,666 (GRCm39)		probably benign	Het
Trhde	C	T	10: 114,636,601 (GRCm39)	G202E	possibly damaging	Het
Trip12	T	C	1: 84,709,827 (GRCm39)	T469A	possibly damaging	Het
Trip4	A	G	9: 65,740,708 (GRCm39)	I533T	probably benign	Het
Tsc22d1	T	C	14: 76,653,983 (GRCm39)	I154T	probably damaging	Het
Ttn	C	A	2: 76,733,686 (GRCm39)		probably benign	Het
Ugt8a	T	C	3: 125,708,631 (GRCm39)	T160A	possibly damaging	Het
Usp54	A	T	14: 20,636,181 (GRCm39)	S288T	probably damaging	Het
Utrn	C	T	10: 12,585,926 (GRCm39)		probably benign	Het

Other mutations in Tmcc2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00816:Tmcc2	APN	1	132,308,436 (GRCm39)	missense	probably benign
IGL01991:Tmcc2	APN	1	132,288,830 (GRCm39)	missense	probably benign	0.25
IGL02259:Tmcc2	APN	1	132,288,898 (GRCm39)	missense	probably benign
IGL02310:Tmcc2	APN	1	132,286,645 (GRCm39)	missense	probably damaging	1.00
IGL02551:Tmcc2	APN	1	132,285,317 (GRCm39)	missense	probably damaging	1.00
IGL03301:Tmcc2	APN	1	132,288,557 (GRCm39)	missense	possibly damaging	0.95
IGL03347:Tmcc2	APN	1	132,285,390 (GRCm39)	missense	probably damaging	1.00
R0131:Tmcc2	UTSW	1	132,308,444 (GRCm39)	missense	probably benign	0.10
R0233:Tmcc2	UTSW	1	132,288,389 (GRCm39)	missense	probably damaging	0.99
R0233:Tmcc2	UTSW	1	132,288,389 (GRCm39)	missense	probably damaging	0.99
R1146:Tmcc2	UTSW	1	132,285,493 (GRCm39)	small deletion	probably benign
R1146:Tmcc2	UTSW	1	132,285,493 (GRCm39)	small deletion	probably benign
R1538:Tmcc2	UTSW	1	132,308,718 (GRCm39)	missense	probably damaging	0.98
R2428:Tmcc2	UTSW	1	132,288,569 (GRCm39)	missense	probably damaging	1.00
R4890:Tmcc2	UTSW	1	132,308,517 (GRCm39)	missense	probably benign	0.43
R5364:Tmcc2	UTSW	1	132,285,534 (GRCm39)	missense	probably damaging	1.00
R5567:Tmcc2	UTSW	1	132,285,543 (GRCm39)	missense	probably benign	0.01
R5596:Tmcc2	UTSW	1	132,288,221 (GRCm39)	missense	probably damaging	1.00
R5916:Tmcc2	UTSW	1	132,285,429 (GRCm39)	missense	probably damaging	0.98
R5931:Tmcc2	UTSW	1	132,285,493 (GRCm39)	small deletion	probably benign
R6278:Tmcc2	UTSW	1	132,286,720 (GRCm39)	missense	probably damaging	0.99
R7404:Tmcc2	UTSW	1	132,288,759 (GRCm39)	missense	probably damaging	0.98
R7806:Tmcc2	UTSW	1	132,288,527 (GRCm39)	missense	probably damaging	1.00
R7848:Tmcc2	UTSW	1	132,288,359 (GRCm39)	missense	probably damaging	1.00
R7903:Tmcc2	UTSW	1	132,288,199 (GRCm39)	missense	probably benign	0.00
R9458:Tmcc2	UTSW	1	132,286,747 (GRCm39)	missense	probably damaging	1.00
RF012:Tmcc2	UTSW	1	132,288,756 (GRCm39)	missense	probably damaging	1.00
X0052:Tmcc2	UTSW	1	132,288,071 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CATAAAGAGTGTTGGATCTCGGGC -3'
(R):5'- CTACGCGATATGCAGCAAGG -3'

Sequencing Primer
(F):5'- TTGGATCTCGGGCTTCCCAG -3'
(R):5'- GGCTGAAGGATGTGGGC -3'

Posted On

2015-04-17