Mutagenetix > Incidental Mutations

Incidental Mutation 'R3907:Cct4'

310265

Institutional Source

Beutler Lab

Gene Symbol

Cct4

Ensembl Gene

ENSMUSG00000007739

Gene Name

chaperonin containing Tcp1, subunit 4 (delta)

Synonyms

2610204B21Rik, A45, T complex protein 1, delta, Cctd, TCP-1 delta

MMRRC Submission

040908-MU

Accession Numbers

Is this an essential gene?

Probably essential (E-score: 0.963) question?

Stock #

R3907 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

22990519-23003780 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 23001560 bp

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Valine at position 376 (I376V)

Ref Sequence

ENSEMBL: ENSMUSP00000133523 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020562] [ENSMUST00000173867] [ENSMUST00000174047] [ENSMUST00000174659]

Predicted Effect

probably benign
Transcript: ENSMUST00000020562
AA Change: I346V

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000020562
Gene: ENSMUSG00000007739
AA Change: I346V

Domain	Start	End	E-Value	Type
Pfam:Cpn60_TCP1	61	509	1.6e-122	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145912

Predicted Effect

probably benign
Transcript: ENSMUST00000173867
AA Change: I376V

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000133523
Gene: ENSMUSG00000007739
AA Change: I376V

Domain	Start	End	E-Value	Type
Pfam:Cpn60_TCP1	44	539	1.9e-159	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000174047

SMART Domains

Protein: ENSMUSP00000134248
Gene: ENSMUSG00000007739

Domain	Start	End	E-Value	Type
Pfam:Cpn60_TCP1	44	93	1.2e-20	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174244

Predicted Effect

probably benign
Transcript: ENSMUST00000174659

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174689

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174746

Meta Mutation Damage Score

0.1916

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.5%
20x: 95.5%

Validation Efficiency

97% (56/58)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The chaperonin containing TCP1 (MIM 186980) complex (CCT), also called the TCP1 ring complex, consists of 2 back-to-back rings, each containing 8 unique but homologous subunits, such as CCT4. CCT assists the folding of newly translated polypeptide substrates through multiple rounds of ATP-driven release and rebinding of partially folded intermediate forms. Substrates of CCT include the cytoskeletal proteins actin (see MIM 102560) and tubulin (see MIM 191130), as well as alpha-transducin (MIM 139330) (Won et al., 1998 [PubMed 9819444]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930402H24Rik	C	T	2: 130,736,576	A663T	probably damaging	Het
Adamts3	C	A	5: 89,861,355	G150C	probably damaging	Het
Ampd3	A	G	7: 110,793,670	D215G	possibly damaging	Het
Ank2	A	G	3: 127,016,898	L513P	probably damaging	Het
Apba1	T	C	19: 23,937,506	I690T	probably damaging	Het
Arid1a	T	C	4: 133,692,912		probably benign	Het
Arsi	G	A	18: 60,916,651	G202E	probably benign	Het
Asns	C	T	6: 7,682,270		probably null	Het
Aspg	T	A	12: 112,112,259	Y57*	probably null	Het
Asph	T	C	4: 9,474,934	K680R	probably benign	Het
Atp2b4	A	T	1: 133,738,586	S243T	probably damaging	Het
Cacna1s	T	A	1: 136,084,269	M483K	probably damaging	Het
Car4	G	A	11: 84,964,357	V141M	probably damaging	Het
Chrm4	C	T	2: 91,927,739	A164V	probably damaging	Het
Csf3r	A	T	4: 126,034,447	D291V	probably benign	Het
Dcaf6	A	T	1: 165,424,380	C58*	probably null	Het
Ddi2	T	C	4: 141,684,281	D440G	probably benign	Het
Defb4	A	T	8: 19,201,261	Q48L	possibly damaging	Het
Duox2	C	T	2: 122,283,060		probably null	Het
E130308A19Rik	C	T	4: 59,752,393	T502I	probably benign	Het
Ephb1	A	G	9: 102,001,726	C522R	probably benign	Het
Fam76a	T	C	4: 132,916,121	K101E	probably damaging	Het
Fat1	G	C	8: 45,023,035	R1706T	probably benign	Het
Fn1	C	T	1: 71,607,913	G1482R	probably damaging	Het
Gm10110	T	C	14: 89,898,147		noncoding transcript	Het
Gphn	T	A	12: 78,493,942		probably benign	Het
Hars	A	T	18: 36,782,716	D48E	probably benign	Het
Hmgcll1	G	A	9: 76,072,661	R111H	probably benign	Het
Ighv3-4	A	G	12: 114,253,918	S18P	probably damaging	Het
Iws1	G	A	18: 32,079,920	E134K	possibly damaging	Het
Kcnj4	G	T	15: 79,485,745	H11Q	probably benign	Het
Krt16	A	G	11: 100,247,163	V329A	possibly damaging	Het
Loxhd1	A	T	18: 77,408,768	M1575L	possibly damaging	Het
Mapkapk2	A	T	1: 131,056,914	S234T	probably damaging	Het
Mum1	T	C	10: 80,238,316	V401A	probably damaging	Het
Mxd1	G	T	6: 86,650,960	Q199K	probably benign	Het
Nlrp5	T	A	7: 23,433,646	D905E	possibly damaging	Het
Olfr1222	A	C	2: 89,125,583	Y49*	probably null	Het
Olfr5	A	T	7: 6,480,679	V159D	probably damaging	Het
Otoa	A	T	7: 121,125,565	Q489L	probably damaging	Het
Pced1b	T	C	15: 97,384,550	S157P	probably damaging	Het
Ppp1r16b	T	C	2: 158,761,490	I345T	probably benign	Het
Prrt4	G	T	6: 29,177,174	L199M	probably damaging	Het
Ptpn6	T	C	6: 124,725,276	D347G	possibly damaging	Het
Rcan1	A	G	16: 92,466,029		probably benign	Het
Rif1	C	T	2: 52,112,545	L2004F	probably benign	Het
Rnf185	A	G	11: 3,426,681		probably benign	Het
Shank2	C	T	7: 144,409,576	P307L	probably damaging	Het
Slc19a3	G	A	1: 83,014,813	R396C	possibly damaging	Het
Stn1	T	C	19: 47,507,823	D321G	probably damaging	Het
Taar7a	T	C	10: 23,992,559	Y308C	probably benign	Het
Tespa1	T	C	10: 130,356,797		probably benign	Het
Tmcc2	T	C	1: 132,360,638	D359G	probably damaging	Het
Trhde	C	T	10: 114,800,696	G202E	possibly damaging	Het
Trip12	T	C	1: 84,732,106	T469A	possibly damaging	Het
Trip4	A	G	9: 65,833,426	I533T	probably benign	Het
Tsc22d1	T	C	14: 76,416,543	I154T	probably damaging	Het
Ttn	C	A	2: 76,903,342		probably benign	Het
Ugt8a	T	C	3: 125,914,982	T160A	possibly damaging	Het
Usp54	A	T	14: 20,586,113	S288T	probably damaging	Het
Utrn	C	T	10: 12,710,182		probably benign	Het

Other mutations in Cct4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00556:Cct4	APN	11	22997656	missense	possibly damaging	0.63
IGL02076:Cct4	APN	11	23002394	missense	probably damaging	1.00
IGL02211:Cct4	APN	11	22993327	intron	probably benign
IGL02416:Cct4	APN	11	23002868	missense	probably damaging	1.00
R0030:Cct4	UTSW	11	23001357	unclassified	probably benign
R0255:Cct4	UTSW	11	22999073	missense	probably damaging	1.00
R0494:Cct4	UTSW	11	22996014	missense	probably benign
R1244:Cct4	UTSW	11	22996417	missense	probably benign	0.02
R1276:Cct4	UTSW	11	23002171	missense	probably damaging	1.00
R1401:Cct4	UTSW	11	22994333	missense	probably damaging	1.00
R1465:Cct4	UTSW	11	23002922	missense	probably damaging	1.00
R1465:Cct4	UTSW	11	23002922	missense	probably damaging	1.00
R1809:Cct4	UTSW	11	22997615	missense	probably benign	0.00
R4640:Cct4	UTSW	11	23002297	missense	probably benign	0.04
R4785:Cct4	UTSW	11	23002866	missense	probably damaging	1.00
R4836:Cct4	UTSW	11	23002898	missense	probably benign	0.20
R5846:Cct4	UTSW	11	23001354	unclassified	probably benign
R7193:Cct4	UTSW	11	22997111	missense	probably benign	0.00
R7214:Cct4	UTSW	11	22990616	unclassified	probably benign
R7336:Cct4	UTSW	11	23001564	missense	possibly damaging	0.85
R7419:Cct4	UTSW	11	22996420	missense	probably benign	0.01
R7725:Cct4	UTSW	11	22990814	missense	probably benign
R7951:Cct4	UTSW	11	22990868	missense	probably benign	0.38
R8003:Cct4	UTSW	11	22996040	critical splice donor site	probably null
R8201:Cct4	UTSW	11	22999115	missense	probably damaging	0.96
R8429:Cct4	UTSW	11	22996030	missense	probably damaging	1.00
X0019:Cct4	UTSW	11	22997118	missense	possibly damaging	0.74

Predicted Primers

PCR Primer
(F):5'- CACATTGACCAGTTCACTGCTG -3'
(R):5'- CCAGCCTCAAATTAAAGTCTTCAG -3'

Sequencing Primer
(F):5'- GACCAGTTCACTGCTGACATG -3'
(R):5'- AAGTTTGATCCCTGGGACCTACATG -3'

Posted On

2015-04-17