Incidental Mutation 'R3979:Iffo1'
ID |
311186 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Iffo1
|
Ensembl Gene |
ENSMUSG00000038271 |
Gene Name |
intermediate filament family orphan 1 |
Synonyms |
4733401N06Rik, Iffo, A930037G23Rik |
MMRRC Submission |
040942-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.071)
|
Stock # |
R3979 (G1)
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
6 |
Chromosomal Location |
125122204-125138745 bp(+) (GRCm39) |
Type of Mutation |
unclassified |
DNA Base Change (assembly) |
A to G
at 125137552 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000138508
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000073605]
[ENSMUST00000117675]
[ENSMUST00000117757]
[ENSMUST00000118875]
[ENSMUST00000119527]
[ENSMUST00000182277]
[ENSMUST00000183272]
[ENSMUST00000144364]
[ENSMUST00000182052]
|
AlphaFold |
Q8BXL9 |
Predicted Effect |
unknown
Transcript: ENSMUST00000051171
AA Change: E547G
|
SMART Domains |
Protein: ENSMUSP00000056373 Gene: ENSMUSG00000038271 AA Change: E547G
Domain | Start | End | E-Value | Type |
low complexity region
|
18 |
30 |
N/A |
INTRINSIC |
low complexity region
|
33 |
66 |
N/A |
INTRINSIC |
Filament
|
72 |
529 |
4.84e-6 |
SMART |
low complexity region
|
537 |
560 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000073605
|
SMART Domains |
Protein: ENSMUSP00000073289 Gene: ENSMUSG00000057666
Domain | Start | End | E-Value | Type |
Gp_dh_N
|
2 |
143 |
4.2e-90 |
SMART |
|
Predicted Effect |
unknown
Transcript: ENSMUST00000117675
AA Change: E547G
|
SMART Domains |
Protein: ENSMUSP00000113088 Gene: ENSMUSG00000038271 AA Change: E547G
Domain | Start | End | E-Value | Type |
coiled coil region
|
21 |
58 |
N/A |
INTRINSIC |
low complexity region
|
105 |
126 |
N/A |
INTRINSIC |
coiled coil region
|
190 |
242 |
N/A |
INTRINSIC |
low complexity region
|
362 |
375 |
N/A |
INTRINSIC |
low complexity region
|
381 |
392 |
N/A |
INTRINSIC |
PDB:1GK4|F
|
393 |
459 |
6e-7 |
PDB |
low complexity region
|
474 |
497 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000117757
|
SMART Domains |
Protein: ENSMUSP00000113942 Gene: ENSMUSG00000057666
Domain | Start | End | E-Value | Type |
Gp_dh_N
|
2 |
150 |
7.33e-109 |
SMART |
Pfam:Gp_dh_C
|
155 |
312 |
5.2e-74 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000118875
|
SMART Domains |
Protein: ENSMUSP00000113213 Gene: ENSMUSG00000057666
Domain | Start | End | E-Value | Type |
Gp_dh_N
|
2 |
150 |
7.33e-109 |
SMART |
Pfam:Gp_dh_C
|
155 |
312 |
7.4e-77 |
PFAM |
|
Predicted Effect |
unknown
Transcript: ENSMUST00000119527
AA Change: E544G
|
SMART Domains |
Protein: ENSMUSP00000113376 Gene: ENSMUSG00000038271 AA Change: E544G
Domain | Start | End | E-Value | Type |
coiled coil region
|
21 |
58 |
N/A |
INTRINSIC |
low complexity region
|
105 |
126 |
N/A |
INTRINSIC |
coiled coil region
|
190 |
242 |
N/A |
INTRINSIC |
low complexity region
|
359 |
372 |
N/A |
INTRINSIC |
low complexity region
|
378 |
389 |
N/A |
INTRINSIC |
PDB:1GK4|F
|
390 |
456 |
6e-7 |
PDB |
low complexity region
|
471 |
494 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000135559
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000139071
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000141230
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000150474
|
Predicted Effect |
unknown
Transcript: ENSMUST00000148835
AA Change: E365G
|
SMART Domains |
Protein: ENSMUSP00000115080 Gene: ENSMUSG00000038271 AA Change: E365G
Domain | Start | End | E-Value | Type |
Filament
|
34 |
348 |
4.99e-2 |
SMART |
low complexity region
|
356 |
379 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182464
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182115
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000144588
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000147954
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182670
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000144205
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000182277
|
SMART Domains |
Protein: ENSMUSP00000138295 Gene: ENSMUSG00000057666
Domain | Start | End | E-Value | Type |
Gp_dh_N
|
2 |
57 |
2.75e-8 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000183272
|
SMART Domains |
Protein: ENSMUSP00000138508 Gene: ENSMUSG00000057666
Domain | Start | End | E-Value | Type |
Gp_dh_N
|
2 |
107 |
7.93e-64 |
SMART |
Pfam:Gp_dh_C
|
112 |
269 |
3e-76 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000144364
|
SMART Domains |
Protein: ENSMUSP00000116701 Gene: ENSMUSG00000038271
Domain | Start | End | E-Value | Type |
coiled coil region
|
21 |
58 |
N/A |
INTRINSIC |
low complexity region
|
105 |
126 |
N/A |
INTRINSIC |
coiled coil region
|
190 |
242 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000182052
|
SMART Domains |
Protein: ENSMUSP00000138403 Gene: ENSMUSG00000057666
Domain | Start | End | E-Value | Type |
Gp_dh_N
|
1 |
55 |
2.96e-4 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000192506
|
Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.5%
- 10x: 97.2%
- 20x: 94.8%
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the intermediate filament family. Intermediate filaments are proteins which are primordial components of the cytoskeleton and nuclear envelope. The proteins encoded by the members of this gene family are evolutionarily and structurally related but have limited sequence homology, with the exception of the central rod domain. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2010]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 55 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abcb11 |
A |
G |
2: 69,154,320 (GRCm39) |
V82A |
probably benign |
Het |
Adam28 |
A |
G |
14: 68,848,443 (GRCm39) |
V671A |
probably benign |
Het |
Ak3 |
T |
A |
19: 29,025,118 (GRCm39) |
S38C |
probably damaging |
Het |
Arfgef1 |
A |
G |
1: 10,279,859 (GRCm39) |
V236A |
probably benign |
Het |
Arhgap10 |
T |
C |
8: 78,147,354 (GRCm39) |
N170S |
probably benign |
Het |
B020004C17Rik |
G |
T |
14: 57,254,645 (GRCm39) |
M156I |
possibly damaging |
Het |
Bicral |
T |
A |
17: 47,141,917 (GRCm39) |
M1L |
unknown |
Het |
Bop1 |
A |
G |
15: 76,338,076 (GRCm39) |
L598P |
probably damaging |
Het |
Cachd1 |
A |
T |
4: 100,828,085 (GRCm39) |
D611V |
probably damaging |
Het |
Cfap70 |
T |
A |
14: 20,489,787 (GRCm39) |
E246D |
probably benign |
Het |
Chl1 |
T |
A |
6: 103,692,245 (GRCm39) |
Y294* |
probably null |
Het |
Chrna2 |
T |
A |
14: 66,386,402 (GRCm39) |
Y183N |
probably damaging |
Het |
Dab2 |
A |
G |
15: 6,464,644 (GRCm39) |
|
probably null |
Het |
Dnajb6 |
T |
C |
5: 29,956,006 (GRCm39) |
F46L |
possibly damaging |
Het |
Exoc7 |
T |
C |
11: 116,187,588 (GRCm39) |
E275G |
probably benign |
Het |
Frem2 |
A |
G |
3: 53,559,491 (GRCm39) |
I1672T |
probably benign |
Het |
Gprc6a |
C |
A |
10: 51,497,197 (GRCm39) |
V449L |
probably benign |
Het |
H2-M10.4 |
A |
G |
17: 36,772,877 (GRCm39) |
V35A |
probably benign |
Het |
Hr |
A |
G |
14: 70,801,024 (GRCm39) |
T699A |
probably benign |
Het |
Iqgap1 |
G |
A |
7: 80,409,682 (GRCm39) |
H218Y |
probably damaging |
Het |
Itpr3 |
A |
C |
17: 27,304,105 (GRCm39) |
K109Q |
probably benign |
Het |
Itpr3 |
A |
G |
17: 27,310,546 (GRCm39) |
D443G |
probably damaging |
Het |
Katna1 |
T |
C |
10: 7,628,518 (GRCm39) |
M249T |
probably damaging |
Het |
Klk1b4 |
G |
A |
7: 43,861,017 (GRCm39) |
G220D |
probably damaging |
Het |
Krt24 |
A |
G |
11: 99,173,596 (GRCm39) |
C242R |
probably benign |
Het |
Madd |
G |
A |
2: 91,007,173 (GRCm39) |
T313I |
possibly damaging |
Het |
Man1c1 |
G |
C |
4: 134,430,749 (GRCm39) |
P11R |
probably damaging |
Het |
Mical2 |
A |
G |
7: 112,006,885 (GRCm39) |
|
probably null |
Het |
Neil3 |
T |
C |
8: 54,076,699 (GRCm39) |
T79A |
probably damaging |
Het |
Nras |
A |
G |
3: 102,967,541 (GRCm39) |
I46V |
probably benign |
Het |
Or2w1b |
T |
A |
13: 21,300,031 (GRCm39) |
H56Q |
probably benign |
Het |
Or4a66 |
T |
C |
2: 88,530,792 (GRCm39) |
S294G |
probably benign |
Het |
Ppfia2 |
A |
G |
10: 106,666,490 (GRCm39) |
T399A |
possibly damaging |
Het |
Rarres1 |
A |
G |
3: 67,403,143 (GRCm39) |
V86A |
probably benign |
Het |
Rdh19 |
A |
T |
10: 127,685,944 (GRCm39) |
R19W |
possibly damaging |
Het |
Rock2 |
A |
G |
12: 17,022,737 (GRCm39) |
K1059E |
probably damaging |
Het |
Sft2d1rt |
T |
A |
11: 45,942,853 (GRCm39) |
K90M |
probably damaging |
Het |
Sparcl1 |
T |
C |
5: 104,240,647 (GRCm39) |
H259R |
probably benign |
Het |
Spata31d1c |
A |
G |
13: 65,182,974 (GRCm39) |
D172G |
possibly damaging |
Het |
Stab2 |
T |
C |
10: 86,699,320 (GRCm39) |
D515G |
possibly damaging |
Het |
Sycp2l |
A |
G |
13: 41,295,440 (GRCm39) |
I334M |
probably damaging |
Het |
Tas2r103 |
A |
G |
6: 133,013,280 (GRCm39) |
L262P |
probably benign |
Het |
Tasor |
T |
C |
14: 27,199,087 (GRCm39) |
L1335S |
possibly damaging |
Het |
Tcaf2 |
A |
G |
6: 42,619,481 (GRCm39) |
V182A |
probably damaging |
Het |
Tcof1 |
C |
T |
18: 60,964,605 (GRCm39) |
E674K |
possibly damaging |
Het |
Trp63 |
A |
G |
16: 25,639,490 (GRCm39) |
|
probably benign |
Het |
Ttn |
A |
T |
2: 76,575,738 (GRCm39) |
W25052R |
probably damaging |
Het |
Ubr1 |
T |
A |
2: 120,693,168 (GRCm39) |
N1746I |
probably benign |
Het |
Vax2 |
T |
C |
6: 83,714,529 (GRCm39) |
V148A |
probably damaging |
Het |
Vmn2r112 |
T |
A |
17: 22,822,096 (GRCm39) |
V258E |
probably damaging |
Het |
Vmn2r96 |
T |
A |
17: 18,817,941 (GRCm39) |
I698N |
probably damaging |
Het |
Wdr90 |
A |
G |
17: 26,078,252 (GRCm39) |
V372A |
probably benign |
Het |
Zfp335 |
C |
T |
2: 164,752,558 (GRCm39) |
G62D |
probably benign |
Het |
Zfp563 |
G |
A |
17: 33,324,701 (GRCm39) |
R432H |
probably benign |
Het |
Zhx1 |
T |
C |
15: 57,916,636 (GRCm39) |
T537A |
probably benign |
Het |
|
Other mutations in Iffo1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00535:Iffo1
|
APN |
6 |
125,137,516 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL01964:Iffo1
|
APN |
6 |
125,128,364 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02208:Iffo1
|
APN |
6 |
125,122,329 (GRCm39) |
missense |
possibly damaging |
0.90 |
PIT4418001:Iffo1
|
UTSW |
6 |
125,126,746 (GRCm39) |
missense |
possibly damaging |
0.66 |
R0400:Iffo1
|
UTSW |
6 |
125,130,434 (GRCm39) |
missense |
probably damaging |
1.00 |
R0907:Iffo1
|
UTSW |
6 |
125,130,124 (GRCm39) |
missense |
probably null |
1.00 |
R1456:Iffo1
|
UTSW |
6 |
125,122,877 (GRCm39) |
missense |
possibly damaging |
0.91 |
R5240:Iffo1
|
UTSW |
6 |
125,129,423 (GRCm39) |
missense |
probably benign |
|
R5654:Iffo1
|
UTSW |
6 |
125,130,030 (GRCm39) |
missense |
probably damaging |
0.99 |
R5965:Iffo1
|
UTSW |
6 |
125,129,471 (GRCm39) |
intron |
probably benign |
|
R8111:Iffo1
|
UTSW |
6 |
125,122,781 (GRCm39) |
missense |
possibly damaging |
0.79 |
R9776:Iffo1
|
UTSW |
6 |
125,130,436 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- TCCCCATCAAGTTGAAAAGGG -3'
(R):5'- CCAATGTCATGGGCGTTGTAC -3'
Sequencing Primer
(F):5'- TCAAGTTGAAAAGGGAAGTGTCTTC -3'
(R):5'- CATGGGCGTTGTACAGGGAG -3'
|
Posted On |
2015-04-29 |