Mutagenetix > Incidental Mutation

Incidental Mutation 'R3979:Rdh19'

311198

Institutional Source

Beutler Lab

Gene Symbol

Rdh19

Ensembl Gene

ENSMUSG00000054052

Gene Name

retinol dehydrogenase 19

Synonyms

RDH-S, Rdhs

MMRRC Submission

040942-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.055) question?

Stock #

R3979 (G1)

Quality Score

203

Status

Not validated

Chromosome

Chromosomal Location

127685797-127697045 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 127685944 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Tryptophan at position 19 (R19W)

Ref Sequence

ENSEMBL: ENSMUSP00000076735 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000077530] [ENSMUST00000125163]

AlphaFold

G5E8H9

Predicted Effect

possibly damaging
Transcript: ENSMUST00000077530
AA Change: R19W

PolyPhen 2 Score 0.892 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000076735
Gene: ENSMUSG00000054052
AA Change: R19W

Domain	Start	End	E-Value	Type
signal peptide	1	17	N/A	INTRINSIC
Pfam:adh_short	30	223	1.8e-43	PFAM
Pfam:DUF1776	43	304	1.1e-8	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000125163

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.2%
20x: 94.8%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb11	A	G	2: 69,154,320 (GRCm39)	V82A	probably benign	Het
Adam28	A	G	14: 68,848,443 (GRCm39)	V671A	probably benign	Het
Ak3	T	A	19: 29,025,118 (GRCm39)	S38C	probably damaging	Het
Arfgef1	A	G	1: 10,279,859 (GRCm39)	V236A	probably benign	Het
Arhgap10	T	C	8: 78,147,354 (GRCm39)	N170S	probably benign	Het
B020004C17Rik	G	T	14: 57,254,645 (GRCm39)	M156I	possibly damaging	Het
Bicral	T	A	17: 47,141,917 (GRCm39)	M1L	unknown	Het
Bop1	A	G	15: 76,338,076 (GRCm39)	L598P	probably damaging	Het
Cachd1	A	T	4: 100,828,085 (GRCm39)	D611V	probably damaging	Het
Cfap70	T	A	14: 20,489,787 (GRCm39)	E246D	probably benign	Het
Chl1	T	A	6: 103,692,245 (GRCm39)	Y294*	probably null	Het
Chrna2	T	A	14: 66,386,402 (GRCm39)	Y183N	probably damaging	Het
Dab2	A	G	15: 6,464,644 (GRCm39)		probably null	Het
Dnajb6	T	C	5: 29,956,006 (GRCm39)	F46L	possibly damaging	Het
Exoc7	T	C	11: 116,187,588 (GRCm39)	E275G	probably benign	Het
Frem2	A	G	3: 53,559,491 (GRCm39)	I1672T	probably benign	Het
Gprc6a	C	A	10: 51,497,197 (GRCm39)	V449L	probably benign	Het
H2-M10.4	A	G	17: 36,772,877 (GRCm39)	V35A	probably benign	Het
Hr	A	G	14: 70,801,024 (GRCm39)	T699A	probably benign	Het
Iffo1	A	G	6: 125,137,552 (GRCm39)		probably benign	Het
Iqgap1	G	A	7: 80,409,682 (GRCm39)	H218Y	probably damaging	Het
Itpr3	A	C	17: 27,304,105 (GRCm39)	K109Q	probably benign	Het
Itpr3	A	G	17: 27,310,546 (GRCm39)	D443G	probably damaging	Het
Katna1	T	C	10: 7,628,518 (GRCm39)	M249T	probably damaging	Het
Klk1b4	G	A	7: 43,861,017 (GRCm39)	G220D	probably damaging	Het
Krt24	A	G	11: 99,173,596 (GRCm39)	C242R	probably benign	Het
Madd	G	A	2: 91,007,173 (GRCm39)	T313I	possibly damaging	Het
Man1c1	G	C	4: 134,430,749 (GRCm39)	P11R	probably damaging	Het
Mical2	A	G	7: 112,006,885 (GRCm39)		probably null	Het
Neil3	T	C	8: 54,076,699 (GRCm39)	T79A	probably damaging	Het
Nras	A	G	3: 102,967,541 (GRCm39)	I46V	probably benign	Het
Or2w1b	T	A	13: 21,300,031 (GRCm39)	H56Q	probably benign	Het
Or4a66	T	C	2: 88,530,792 (GRCm39)	S294G	probably benign	Het
Ppfia2	A	G	10: 106,666,490 (GRCm39)	T399A	possibly damaging	Het
Rarres1	A	G	3: 67,403,143 (GRCm39)	V86A	probably benign	Het
Rock2	A	G	12: 17,022,737 (GRCm39)	K1059E	probably damaging	Het
Sft2d1rt	T	A	11: 45,942,853 (GRCm39)	K90M	probably damaging	Het
Sparcl1	T	C	5: 104,240,647 (GRCm39)	H259R	probably benign	Het
Spata31d1c	A	G	13: 65,182,974 (GRCm39)	D172G	possibly damaging	Het
Stab2	T	C	10: 86,699,320 (GRCm39)	D515G	possibly damaging	Het
Sycp2l	A	G	13: 41,295,440 (GRCm39)	I334M	probably damaging	Het
Tas2r103	A	G	6: 133,013,280 (GRCm39)	L262P	probably benign	Het
Tasor	T	C	14: 27,199,087 (GRCm39)	L1335S	possibly damaging	Het
Tcaf2	A	G	6: 42,619,481 (GRCm39)	V182A	probably damaging	Het
Tcof1	C	T	18: 60,964,605 (GRCm39)	E674K	possibly damaging	Het
Trp63	A	G	16: 25,639,490 (GRCm39)		probably benign	Het
Ttn	A	T	2: 76,575,738 (GRCm39)	W25052R	probably damaging	Het
Ubr1	T	A	2: 120,693,168 (GRCm39)	N1746I	probably benign	Het
Vax2	T	C	6: 83,714,529 (GRCm39)	V148A	probably damaging	Het
Vmn2r112	T	A	17: 22,822,096 (GRCm39)	V258E	probably damaging	Het
Vmn2r96	T	A	17: 18,817,941 (GRCm39)	I698N	probably damaging	Het
Wdr90	A	G	17: 26,078,252 (GRCm39)	V372A	probably benign	Het
Zfp335	C	T	2: 164,752,558 (GRCm39)	G62D	probably benign	Het
Zfp563	G	A	17: 33,324,701 (GRCm39)	R432H	probably benign	Het
Zhx1	T	C	15: 57,916,636 (GRCm39)	T537A	probably benign	Het

Other mutations in Rdh19

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01565:Rdh19	APN	10	127,695,464 (GRCm39)	missense	probably benign
R0011:Rdh19	UTSW	10	127,692,780 (GRCm39)	missense	probably damaging	1.00
R0011:Rdh19	UTSW	10	127,692,780 (GRCm39)	missense	probably damaging	1.00
R3841:Rdh19	UTSW	10	127,692,755 (GRCm39)	missense	probably benign
R3978:Rdh19	UTSW	10	127,685,944 (GRCm39)	missense	possibly damaging	0.89
R3981:Rdh19	UTSW	10	127,686,017 (GRCm39)	missense	probably benign	0.43
R3983:Rdh19	UTSW	10	127,686,017 (GRCm39)	missense	probably benign	0.43
R4555:Rdh19	UTSW	10	127,686,020 (GRCm39)	missense	probably benign	0.20
R4871:Rdh19	UTSW	10	127,696,013 (GRCm39)	missense	probably benign
R4915:Rdh19	UTSW	10	127,686,113 (GRCm39)	missense	probably benign	0.06
R5712:Rdh19	UTSW	10	127,692,756 (GRCm39)	missense	probably benign	0.05
R5990:Rdh19	UTSW	10	127,695,463 (GRCm39)	missense	probably benign
R7328:Rdh19	UTSW	10	127,692,896 (GRCm39)	missense	probably damaging	1.00
R7806:Rdh19	UTSW	10	127,692,740 (GRCm39)	missense	probably damaging	0.98
R7886:Rdh19	UTSW	10	127,686,169 (GRCm39)	missense	probably benign	0.05
R8496:Rdh19	UTSW	10	127,695,469 (GRCm39)	missense	probably damaging	1.00
R8935:Rdh19	UTSW	10	127,685,929 (GRCm39)	missense	possibly damaging	0.77
R9090:Rdh19	UTSW	10	127,696,142 (GRCm39)	missense	probably damaging	0.99
R9140:Rdh19	UTSW	10	127,692,830 (GRCm39)	missense
R9271:Rdh19	UTSW	10	127,696,142 (GRCm39)	missense	probably damaging	0.99
R9344:Rdh19	UTSW	10	127,692,740 (GRCm39)	missense	probably damaging	0.98
R9473:Rdh19	UTSW	10	127,696,177 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- ACTTTCCTGTGTGAGCAGAG -3'
(R):5'- GTACCTCTGTTCCCAACACG -3'

Sequencing Primer
(F):5'- AGAGGCCAGCCGCATTTTG -3'
(R):5'- TTGGTGACATCCAGGATCAC -3'

Posted On

2015-04-29