Incidental Mutation 'R4005:Or4g17'
| ID |
311417 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or4g17
|
| Ensembl Gene |
ENSMUSG00000108931 |
| Gene Name |
olfactory receptor family 4 subfamily G member 17 |
| Synonyms |
GA_x6K02T2Q125-72430580-72431515, MOR245-13, Olfr1284 |
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.186)
|
| Stock # |
R4005 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
2 |
| Chromosomal Location |
111209347-111210282 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to A
at 111210088 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Isoleucine
at position 248
(V248I)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000147014
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000062407]
[ENSMUST00000209096]
|
| AlphaFold |
Q8VF29 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000062407
AA Change: V248I
PolyPhen 2
Score 0.054 (Sensitivity: 0.94; Specificity: 0.84)
|
| SMART Domains |
Protein: ENSMUSP00000052153
Gene: ENSMUSG00000108931
AA Change: V248I
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
31 |
305 |
7.2e-45 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
34 |
302 |
2.4e-5 |
PFAM |
|
Pfam:7tm_1
|
41 |
287 |
2e-18 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000209096
AA Change: V248I
PolyPhen 2
Score 0.054 (Sensitivity: 0.94; Specificity: 0.84)
|
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 94.8%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 38 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adar |
T |
A |
3: 89,657,094 (GRCm39) |
L488Q |
probably damaging |
Het |
| Ajm1 |
T |
C |
2: 25,468,868 (GRCm39) |
T348A |
probably benign |
Het |
| Arhgef26 |
T |
C |
3: 62,247,816 (GRCm39) |
M300T |
probably benign |
Het |
| Asl |
C |
T |
5: 130,047,673 (GRCm39) |
|
probably null |
Het |
| Capn10 |
T |
A |
1: 92,868,313 (GRCm39) |
L260Q |
probably damaging |
Het |
| Cdhr3 |
T |
C |
12: 33,130,355 (GRCm39) |
D160G |
probably damaging |
Het |
| Cep290 |
A |
G |
10: 100,374,870 (GRCm39) |
E1372G |
probably damaging |
Het |
| Cpeb2 |
A |
G |
5: 43,395,755 (GRCm39) |
|
probably benign |
Het |
| Cpeb4 |
G |
A |
11: 31,875,390 (GRCm39) |
A530T |
probably damaging |
Het |
| Cstl1 |
A |
T |
2: 148,597,190 (GRCm39) |
I64F |
probably damaging |
Het |
| Ddx28 |
C |
G |
8: 106,737,560 (GRCm39) |
R166P |
possibly damaging |
Het |
| Dgkd |
T |
C |
1: 87,863,145 (GRCm39) |
I64T |
possibly damaging |
Het |
| Dmxl2 |
T |
C |
9: 54,353,674 (GRCm39) |
I765V |
probably benign |
Het |
| Edem3 |
T |
C |
1: 151,635,506 (GRCm39) |
M60T |
probably damaging |
Het |
| Farp1 |
C |
T |
14: 121,513,809 (GRCm39) |
R844W |
probably damaging |
Het |
| Fat3 |
G |
A |
9: 15,909,567 (GRCm39) |
S2145F |
probably damaging |
Het |
| Hmcn1 |
C |
G |
1: 150,598,204 (GRCm39) |
L1699F |
possibly damaging |
Het |
| Igsf10 |
A |
T |
3: 59,235,981 (GRCm39) |
L1400H |
probably benign |
Het |
| Ikzf3 |
C |
T |
11: 98,379,843 (GRCm39) |
E142K |
probably damaging |
Het |
| Ilkap |
T |
A |
1: 91,312,985 (GRCm39) |
N170I |
probably benign |
Het |
| Kctd3 |
T |
G |
1: 188,734,124 (GRCm39) |
I39L |
possibly damaging |
Het |
| Lrit3 |
C |
A |
3: 129,585,021 (GRCm39) |
V246L |
probably benign |
Het |
| Magi1 |
A |
G |
6: 93,678,299 (GRCm39) |
I619T |
probably damaging |
Het |
| Map1b |
G |
T |
13: 99,566,415 (GRCm39) |
P2102H |
unknown |
Het |
| Mcm10 |
G |
T |
2: 5,005,814 (GRCm39) |
S440R |
probably damaging |
Het |
| Mtss2 |
CG |
CGG |
8: 111,465,673 (GRCm39) |
|
probably null |
Het |
| Nlrp9a |
A |
G |
7: 26,257,975 (GRCm39) |
N531S |
probably benign |
Het |
| Nrcam |
T |
A |
12: 44,579,429 (GRCm39) |
D31E |
probably benign |
Het |
| Obscn |
T |
C |
11: 59,022,472 (GRCm39) |
R758G |
possibly damaging |
Het |
| Ogn |
A |
C |
13: 49,762,775 (GRCm39) |
E39A |
possibly damaging |
Het |
| Or52z14 |
A |
G |
7: 103,253,470 (GRCm39) |
Y203C |
probably damaging |
Het |
| Or5b94 |
A |
T |
19: 12,652,210 (GRCm39) |
I214L |
probably benign |
Het |
| Pramel20 |
A |
G |
4: 143,298,839 (GRCm39) |
T261A |
probably benign |
Het |
| Rgs2 |
T |
A |
1: 143,877,606 (GRCm39) |
I150L |
probably benign |
Het |
| Rnf19a |
A |
T |
15: 36,245,774 (GRCm39) |
D490E |
probably damaging |
Het |
| Spag5 |
T |
C |
11: 78,212,355 (GRCm39) |
M1101T |
probably benign |
Het |
| Ulk4 |
A |
T |
9: 120,997,265 (GRCm39) |
L769Q |
possibly damaging |
Het |
| Ythdc2 |
A |
G |
18: 44,966,195 (GRCm39) |
S144G |
probably benign |
Het |
|
| Other mutations in Or4g17 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL03024:Or4g17
|
APN |
2 |
111,209,935 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R0526:Or4g17
|
UTSW |
2 |
111,209,837 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R0731:Or4g17
|
UTSW |
2 |
111,209,638 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1762:Or4g17
|
UTSW |
2 |
111,209,918 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1765:Or4g17
|
UTSW |
2 |
111,209,491 (GRCm39) |
missense |
probably benign |
0.39 |
|
R3106:Or4g17
|
UTSW |
2 |
111,209,840 (GRCm39) |
missense |
probably benign |
0.23 |
|
R3803:Or4g17
|
UTSW |
2 |
111,209,638 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R3894:Or4g17
|
UTSW |
2 |
111,209,982 (GRCm39) |
missense |
probably benign |
0.09 |
|
R4227:Or4g17
|
UTSW |
2 |
111,209,410 (GRCm39) |
missense |
probably benign |
|
|
R4637:Or4g17
|
UTSW |
2 |
111,209,927 (GRCm39) |
missense |
probably benign |
0.03 |
|
R4707:Or4g17
|
UTSW |
2 |
111,209,990 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4762:Or4g17
|
UTSW |
2 |
111,210,082 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5150:Or4g17
|
UTSW |
2 |
111,209,598 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5309:Or4g17
|
UTSW |
2 |
111,210,179 (GRCm39) |
missense |
possibly damaging |
0.52 |
|
R5312:Or4g17
|
UTSW |
2 |
111,210,179 (GRCm39) |
missense |
possibly damaging |
0.52 |
|
R6554:Or4g17
|
UTSW |
2 |
111,209,504 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R6913:Or4g17
|
UTSW |
2 |
111,209,347 (GRCm39) |
start codon destroyed |
probably null |
0.03 |
|
R6980:Or4g17
|
UTSW |
2 |
111,209,620 (GRCm39) |
missense |
possibly damaging |
0.77 |
|
R6995:Or4g17
|
UTSW |
2 |
111,209,708 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7168:Or4g17
|
UTSW |
2 |
111,210,224 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7332:Or4g17
|
UTSW |
2 |
111,209,738 (GRCm39) |
missense |
not run |
|
|
R7464:Or4g17
|
UTSW |
2 |
111,209,543 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8125:Or4g17
|
UTSW |
2 |
111,210,086 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8963:Or4g17
|
UTSW |
2 |
111,209,645 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9660:Or4g17
|
UTSW |
2 |
111,210,239 (GRCm39) |
missense |
probably damaging |
0.97 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGGACAGCTTTTACTGCGAC -3'
(R):5'- ATGTAACATCTCTGCTTGCTCAG -3'
Sequencing Primer
(F):5'- TACAACTGGCATGCACGG -3'
(R):5'- GTGACAGCAAAGTCAACAAT -3'
|
| Posted On |
2015-04-29 |
Incidental Mutation