Mutagenetix > Incidental Mutation

Incidental Mutation 'R3960:Smarcd2'

312063

Institutional Source

Beutler Lab

Gene Symbol

Smarcd2

Ensembl Gene

ENSMUSG00000078619

Gene Name

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2

Synonyms

Baf60b

Accession Numbers

Essential gene?

Probably essential (E-score: 0.955) question?

Stock #

R3960 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

106154005-106163798 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 106157401 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 182 (S182P)

Ref Sequence

ENSEMBL: ENSMUSP00000102456 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021049] [ENSMUST00000021052] [ENSMUST00000106843] [ENSMUST00000133131] [ENSMUST00000140255]

AlphaFold

Q99JR8

Predicted Effect

probably benign
Transcript: ENSMUST00000021049

SMART Domains

Protein: ENSMUSP00000021049
Gene: ENSMUSG00000020708

Domain	Start	End	E-Value	Type
low complexity region	57	69	N/A	INTRINSIC
low complexity region	96	108	N/A	INTRINSIC
AAA	182	321	6.96e-25	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000021052
AA Change: S229P

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000021052
Gene: ENSMUSG00000078619
AA Change: S229P

Domain	Start	End	E-Value	Type
low complexity region	5	42	N/A	INTRINSIC
low complexity region	44	58	N/A	INTRINSIC
low complexity region	122	131	N/A	INTRINSIC
Blast:KISc	136	287	2e-36	BLAST
SWIB	307	386	1.3e-21	SMART
Blast:MYSc	468	514	5e-11	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000106841

Predicted Effect

probably damaging
Transcript: ENSMUST00000106843
AA Change: S182P

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000102456
Gene: ENSMUSG00000078619
AA Change: S182P

Domain	Start	End	E-Value	Type
low complexity region	75	84	N/A	INTRINSIC
Blast:KISc	89	240	1e-36	BLAST
SWIB	260	339	1.3e-21	SMART
Blast:MYSc	421	467	5e-11	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132278

Predicted Effect

probably benign
Transcript: ENSMUST00000133131

SMART Domains

Protein: ENSMUSP00000138057
Gene: ENSMUSG00000020708

Domain	Start	End	E-Value	Type
low complexity region	57	69	N/A	INTRINSIC
low complexity region	96	108	N/A	INTRINSIC
AAA	182	321	6.96e-25	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000140255

SMART Domains

Protein: ENSMUSP00000133629
Gene: ENSMUSG00000078619

Domain	Start	End	E-Value	Type
SWIB	29	108	1.3e-21	SMART
Blast:MYSc	190	236	6e-12	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174253

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155243

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174017

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155514

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.2%
20x: 94.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the SWI/SNF family of proteins, whose members display helicase and ATPase activities and which are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI and has sequence similarity to the yeast Swp73 protein. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 22 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700049A03Rik	G	T	12: 71,211,320 (GRCm39)	E685*	probably null	Het
2700049A03Rik	A	T	12: 71,211,321 (GRCm39)	E685V	possibly damaging	Het
Celf4	A	G	18: 25,670,811 (GRCm39)	M124T	probably benign	Het
Espl1	A	G	15: 102,221,424 (GRCm39)	I944V	probably damaging	Het
Etl4	A	G	2: 20,344,854 (GRCm39)	T53A	probably benign	Het
Hao1	A	C	2: 134,364,903 (GRCm39)		probably null	Het
Hmgcs2	T	C	3: 98,204,793 (GRCm39)	F317S	possibly damaging	Het
Ildr2	T	A	1: 166,136,909 (GRCm39)	W564R	probably damaging	Het
Impg1	G	T	9: 80,322,917 (GRCm39)	F29L	probably benign	Het
Itgam	T	C	7: 127,714,347 (GRCm39)	V834A	probably benign	Het
Itpr2	C	T	6: 146,327,008 (GRCm39)	V120I	probably damaging	Het
Itpr2	T	C	6: 146,131,262 (GRCm39)	N1948D	probably damaging	Het
Katnb1	T	C	8: 95,813,925 (GRCm39)	V17A	possibly damaging	Het
Nipbl	T	C	15: 8,380,018 (GRCm39)	N925D	probably benign	Het
Oasl2	T	C	5: 115,043,098 (GRCm39)	V70A	probably benign	Het
Panx1	GTTCTTCT	GTTCT	9: 14,917,467 (GRCm39)		probably benign	Het
Pcdh10	A	G	3: 45,333,749 (GRCm39)	H21R	probably benign	Het
Prkg2	G	T	5: 99,145,354 (GRCm39)	T160K	possibly damaging	Het
Sec23ip	C	G	7: 128,378,574 (GRCm39)	T796S	probably benign	Het
Tbrg4	A	G	11: 6,568,077 (GRCm39)	S484P	probably benign	Het
Tprkb	A	G	6: 85,905,783 (GRCm39)	E156G	probably benign	Het
Zfp647	A	G	15: 76,795,176 (GRCm39)		probably null	Het

Other mutations in Smarcd2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00392:Smarcd2	APN	11	106,156,730 (GRCm39)	missense	probably damaging	1.00
IGL01880:Smarcd2	APN	11	106,157,503 (GRCm39)	missense	probably damaging	1.00
R0357:Smarcd2	UTSW	11	106,158,158 (GRCm39)	critical splice donor site	probably null
R0626:Smarcd2	UTSW	11	106,158,241 (GRCm39)	missense	probably benign	0.10
R1524:Smarcd2	UTSW	11	106,157,978 (GRCm39)	missense	probably benign	0.01
R1822:Smarcd2	UTSW	11	106,158,222 (GRCm39)	missense	probably benign	0.00
R2072:Smarcd2	UTSW	11	106,156,133 (GRCm39)	nonsense	probably null
R2074:Smarcd2	UTSW	11	106,156,133 (GRCm39)	nonsense	probably null
R2359:Smarcd2	UTSW	11	106,157,990 (GRCm39)	missense	probably benign	0.01
R4211:Smarcd2	UTSW	11	106,157,731 (GRCm39)	nonsense	probably null
R4258:Smarcd2	UTSW	11	106,156,076 (GRCm39)	missense	probably damaging	1.00
R4822:Smarcd2	UTSW	11	106,157,357 (GRCm39)	splice site	probably null
R5174:Smarcd2	UTSW	11	106,157,871 (GRCm39)	unclassified	probably benign
R6035:Smarcd2	UTSW	11	106,157,715 (GRCm39)	critical splice donor site	probably null
R6035:Smarcd2	UTSW	11	106,157,715 (GRCm39)	critical splice donor site	probably null
R7383:Smarcd2	UTSW	11	106,155,602 (GRCm39)	missense	probably damaging	1.00
R7530:Smarcd2	UTSW	11	106,156,587 (GRCm39)	missense	probably damaging	1.00
R7855:Smarcd2	UTSW	11	106,158,392 (GRCm39)	missense	probably benign	0.17
R9469:Smarcd2	UTSW	11	106,163,332 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TGTGAGGCATAGAAACAACCAC -3'
(R):5'- AGTACTCACACAGGGAGCTG -3'

Sequencing Primer
(F):5'- CCCCACCAAGTCTAAGCTGTTAAC -3'
(R):5'- GTAGAGCGCACACTCACTTTAG -3'

Posted On

2015-04-29