Incidental Mutation 'R3976:Rel'
ID |
312647 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Rel
|
Ensembl Gene |
ENSMUSG00000020275 |
Gene Name |
reticuloendotheliosis oncogene |
Synonyms |
c-Rel |
MMRRC Submission |
040842-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R3976 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
11 |
Chromosomal Location |
23686847-23720969 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 23692939 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Serine to Proline
at position 365
(S365P)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000099928
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000102864]
|
AlphaFold |
no structure available at present |
Predicted Effect |
probably benign
Transcript: ENSMUST00000102864
AA Change: S365P
PolyPhen 2
Score 0.069 (Sensitivity: 0.94; Specificity: 0.84)
|
SMART Domains |
Protein: ENSMUSP00000099928 Gene: ENSMUSG00000020275 AA Change: S365P
Domain | Start | End | E-Value | Type |
Pfam:RHD_DNA_bind
|
10 |
178 |
8.1e-78 |
PFAM |
IPT
|
185 |
280 |
7.64e-24 |
SMART |
low complexity region
|
512 |
530 |
N/A |
INTRINSIC |
|
Meta Mutation Damage Score |
0.0624 |
Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.4%
- 10x: 96.8%
- 20x: 93.3%
|
Validation Efficiency |
98% (49/50) |
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that belongs to the Rel homology domain/immunoglobulin-like fold, plexin, transcription factor (RHD/IPT) family. Members of this family regulate genes involved in apoptosis, inflammation, the immune response, and oncogenic processes. This proto-oncogene plays a role in the survival and proliferation of B lymphocytes. Mutation or amplification of this gene is associated with B-cell lymphomas, including Hodgkin's lymphoma. Single nucleotide polymorphisms in this gene are associated with susceptibility to ulcerative colitis and rheumatoid arthritis. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Apr 2014] PHENOTYPE: Homozygous inactivation of this gene causes defects in lymphocyte proliferation, humoral immunity and cytokine production, and may lead to impaired Th1 responses and resistance to autoimmune disease. Mice lacking only the COOH-terminal region show severehemopoietic defects and lymphoid hyperplasia. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 46 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abca9 |
T |
C |
11: 110,039,615 (GRCm39) |
D466G |
probably benign |
Het |
Asb4 |
A |
T |
6: 5,390,771 (GRCm39) |
M55L |
probably benign |
Het |
Atxn7l1 |
T |
C |
12: 33,375,954 (GRCm39) |
S10P |
probably damaging |
Het |
Bola3 |
T |
C |
6: 83,328,249 (GRCm39) |
L45P |
probably benign |
Het |
Cacna2d4 |
A |
G |
6: 119,255,134 (GRCm39) |
|
probably null |
Het |
Cfap54 |
A |
G |
10: 92,675,333 (GRCm39) |
S2863P |
possibly damaging |
Het |
Cyb5r3 |
A |
G |
15: 83,044,330 (GRCm39) |
V180A |
possibly damaging |
Het |
Dglucy |
A |
T |
12: 100,807,648 (GRCm39) |
T186S |
probably benign |
Het |
Eml5 |
A |
T |
12: 98,768,724 (GRCm39) |
|
probably benign |
Het |
Fam90a1a |
G |
A |
8: 22,451,432 (GRCm39) |
D98N |
probably damaging |
Het |
Fbxo16 |
T |
A |
14: 65,524,606 (GRCm39) |
L42Q |
probably damaging |
Het |
Fbxw16 |
A |
G |
9: 109,268,697 (GRCm39) |
V231A |
probably benign |
Het |
Fermt3 |
G |
A |
19: 6,979,792 (GRCm39) |
A447V |
possibly damaging |
Het |
Fignl2 |
A |
G |
15: 100,950,467 (GRCm39) |
L605P |
unknown |
Het |
Gcsam |
T |
G |
16: 45,440,192 (GRCm39) |
N78K |
probably damaging |
Het |
Gdf2 |
T |
A |
14: 33,666,791 (GRCm39) |
V171D |
probably damaging |
Het |
Gm28042 |
C |
T |
2: 119,867,237 (GRCm39) |
H218Y |
probably benign |
Het |
Herpud2 |
A |
G |
9: 25,021,734 (GRCm39) |
V304A |
probably damaging |
Het |
Kcnma1 |
C |
T |
14: 24,053,815 (GRCm39) |
|
probably null |
Het |
Lrp3 |
T |
C |
7: 34,903,530 (GRCm39) |
D251G |
probably benign |
Het |
Mapkbp1 |
T |
C |
2: 119,852,339 (GRCm39) |
V957A |
possibly damaging |
Het |
Mepe |
C |
T |
5: 104,484,944 (GRCm39) |
P28L |
probably benign |
Het |
Muc2 |
T |
A |
7: 141,300,541 (GRCm39) |
|
probably benign |
Het |
Nt5dc2 |
T |
C |
14: 30,860,832 (GRCm39) |
S439P |
probably damaging |
Het |
Opn4 |
C |
T |
14: 34,319,066 (GRCm39) |
R173H |
probably benign |
Het |
Or2k2 |
A |
G |
4: 58,785,164 (GRCm39) |
L186P |
probably damaging |
Het |
Or4f14 |
C |
T |
2: 111,742,951 (GRCm39) |
G108D |
possibly damaging |
Het |
Phf8-ps |
A |
T |
17: 33,285,405 (GRCm39) |
S466T |
probably benign |
Het |
Ppp1r12a |
T |
C |
10: 108,089,341 (GRCm39) |
V660A |
probably benign |
Het |
Prdm6 |
T |
C |
18: 53,673,278 (GRCm39) |
I186T |
possibly damaging |
Het |
Rab18 |
T |
A |
18: 6,778,529 (GRCm39) |
D53E |
probably benign |
Het |
Rhbg |
C |
A |
3: 88,151,843 (GRCm39) |
G383V |
probably damaging |
Het |
Rnps1-ps |
A |
T |
6: 7,983,149 (GRCm39) |
|
noncoding transcript |
Het |
Rp1l1 |
T |
A |
14: 64,267,758 (GRCm39) |
Y1115N |
probably damaging |
Het |
Runx2 |
T |
C |
17: 44,920,966 (GRCm39) |
T339A |
possibly damaging |
Het |
Ryr3 |
T |
C |
2: 112,506,182 (GRCm39) |
E3455G |
possibly damaging |
Het |
Serpina1d |
A |
T |
12: 103,734,107 (GRCm39) |
S66T |
probably benign |
Het |
Setd3 |
T |
C |
12: 108,131,417 (GRCm39) |
K3R |
possibly damaging |
Het |
Spg7 |
A |
G |
8: 123,806,187 (GRCm39) |
D299G |
probably damaging |
Het |
Sptbn5 |
C |
T |
2: 119,878,742 (GRCm39) |
|
noncoding transcript |
Het |
Srcap |
A |
G |
7: 127,148,411 (GRCm39) |
T1859A |
probably benign |
Het |
Suox |
A |
G |
10: 128,506,906 (GRCm39) |
V374A |
probably damaging |
Het |
Tesk1 |
C |
T |
4: 43,445,786 (GRCm39) |
P280S |
possibly damaging |
Het |
Tsc22d1 |
T |
C |
14: 76,656,049 (GRCm39) |
S761P |
probably damaging |
Het |
Tubal3 |
C |
T |
13: 3,982,946 (GRCm39) |
S242L |
probably benign |
Het |
Ugt2b1 |
C |
A |
5: 87,065,534 (GRCm39) |
V502L |
probably benign |
Het |
|
Other mutations in Rel |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00663:Rel
|
APN |
11 |
23,707,043 (GRCm39) |
missense |
probably benign |
0.31 |
IGL00819:Rel
|
APN |
11 |
23,693,029 (GRCm39) |
missense |
probably benign |
0.13 |
IGL00906:Rel
|
APN |
11 |
23,694,266 (GRCm39) |
missense |
probably benign |
0.00 |
IGL01358:Rel
|
APN |
11 |
23,711,155 (GRCm39) |
missense |
probably benign |
0.06 |
IGL01820:Rel
|
APN |
11 |
23,703,218 (GRCm39) |
missense |
probably benign |
0.22 |
IGL01889:Rel
|
APN |
11 |
23,707,035 (GRCm39) |
missense |
probably damaging |
0.96 |
IGL03270:Rel
|
APN |
11 |
23,692,584 (GRCm39) |
missense |
probably benign |
0.16 |
Amun-ra
|
UTSW |
11 |
23,707,026 (GRCm39) |
nonsense |
probably null |
|
Fleur
|
UTSW |
11 |
0 () |
unclassified |
|
|
giza
|
UTSW |
11 |
23,707,010 (GRCm39) |
missense |
probably damaging |
1.00 |
Horus
|
UTSW |
11 |
23,703,215 (GRCm39) |
critical splice donor site |
probably null |
|
osirus
|
UTSW |
11 |
23,692,713 (GRCm39) |
missense |
probably benign |
0.00 |
Seth
|
UTSW |
11 |
23,698,855 (GRCm39) |
missense |
probably damaging |
1.00 |
R0766:Rel
|
UTSW |
11 |
23,707,010 (GRCm39) |
missense |
probably damaging |
1.00 |
R0924:Rel
|
UTSW |
11 |
23,692,439 (GRCm39) |
missense |
probably benign |
0.02 |
R0930:Rel
|
UTSW |
11 |
23,692,439 (GRCm39) |
missense |
probably benign |
0.02 |
R1312:Rel
|
UTSW |
11 |
23,707,010 (GRCm39) |
missense |
probably damaging |
1.00 |
R1339:Rel
|
UTSW |
11 |
23,695,763 (GRCm39) |
missense |
probably damaging |
1.00 |
R1584:Rel
|
UTSW |
11 |
23,695,546 (GRCm39) |
missense |
probably damaging |
1.00 |
R1980:Rel
|
UTSW |
11 |
23,692,761 (GRCm39) |
missense |
probably benign |
|
R1981:Rel
|
UTSW |
11 |
23,692,761 (GRCm39) |
missense |
probably benign |
|
R1982:Rel
|
UTSW |
11 |
23,692,761 (GRCm39) |
missense |
probably benign |
|
R2513:Rel
|
UTSW |
11 |
23,695,823 (GRCm39) |
missense |
probably damaging |
1.00 |
R2870:Rel
|
UTSW |
11 |
23,711,129 (GRCm39) |
missense |
probably benign |
|
R2870:Rel
|
UTSW |
11 |
23,711,129 (GRCm39) |
missense |
probably benign |
|
R2871:Rel
|
UTSW |
11 |
23,711,129 (GRCm39) |
missense |
probably benign |
|
R2871:Rel
|
UTSW |
11 |
23,711,129 (GRCm39) |
missense |
probably benign |
|
R2872:Rel
|
UTSW |
11 |
23,711,129 (GRCm39) |
missense |
probably benign |
|
R2872:Rel
|
UTSW |
11 |
23,711,129 (GRCm39) |
missense |
probably benign |
|
R3617:Rel
|
UTSW |
11 |
23,695,780 (GRCm39) |
missense |
probably damaging |
1.00 |
R4010:Rel
|
UTSW |
11 |
23,711,138 (GRCm39) |
missense |
probably benign |
|
R4067:Rel
|
UTSW |
11 |
23,703,215 (GRCm39) |
critical splice donor site |
probably null |
|
R5345:Rel
|
UTSW |
11 |
23,692,462 (GRCm39) |
missense |
probably benign |
0.00 |
R5866:Rel
|
UTSW |
11 |
23,692,724 (GRCm39) |
nonsense |
probably null |
|
R6032:Rel
|
UTSW |
11 |
23,692,684 (GRCm39) |
missense |
probably benign |
0.02 |
R6032:Rel
|
UTSW |
11 |
23,692,684 (GRCm39) |
missense |
probably benign |
0.02 |
R6562:Rel
|
UTSW |
11 |
23,707,026 (GRCm39) |
nonsense |
probably null |
|
R6886:Rel
|
UTSW |
11 |
23,694,304 (GRCm39) |
missense |
probably benign |
0.03 |
R7516:Rel
|
UTSW |
11 |
23,692,785 (GRCm39) |
missense |
probably benign |
0.00 |
R7522:Rel
|
UTSW |
11 |
23,720,676 (GRCm39) |
splice site |
probably null |
|
R7663:Rel
|
UTSW |
11 |
23,692,713 (GRCm39) |
missense |
probably benign |
0.00 |
R7873:Rel
|
UTSW |
11 |
23,692,957 (GRCm39) |
missense |
probably benign |
0.00 |
R7960:Rel
|
UTSW |
11 |
23,694,493 (GRCm39) |
missense |
probably damaging |
0.98 |
R8679:Rel
|
UTSW |
11 |
23,692,430 (GRCm39) |
missense |
probably benign |
|
R8819:Rel
|
UTSW |
11 |
23,695,626 (GRCm39) |
missense |
probably damaging |
1.00 |
R9001:Rel
|
UTSW |
11 |
23,698,855 (GRCm39) |
missense |
probably damaging |
1.00 |
R9215:Rel
|
UTSW |
11 |
23,698,870 (GRCm39) |
missense |
probably benign |
0.00 |
Z1176:Rel
|
UTSW |
11 |
23,695,472 (GRCm39) |
missense |
probably damaging |
0.99 |
|
Predicted Primers |
PCR Primer
(F):5'- CAGGCCCTTCTAGGAATGGAAG -3'
(R):5'- TATTTGATATGTGTCAGTGCCCTAG -3'
Sequencing Primer
(F):5'- CTTCTAGGAATGGAAGGATACCTTG -3'
(R):5'- GTCAGTGCCCTAGAAAGTTTTTAG -3'
|
Posted On |
2015-04-30 |