Incidental Mutation 'R3880:Or52a33'
| ID |
312782 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or52a33
|
| Ensembl Gene |
ENSMUSG00000050085 |
| Gene Name |
olfactory receptor family 52 subfamily A member 33 |
| Synonyms |
GA_x6K02T2PBJ9-6362863-6361910, MOR26-1, Olfr622 |
| MMRRC Submission |
040794-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.061)
|
| Stock # |
R3880 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
7 |
| Chromosomal Location |
103288392-103289345 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to G
at 103288831 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Lysine to Threonine
at position 172
(K172T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000151149
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000058744]
[ENSMUST00000213536]
[ENSMUST00000216570]
|
| AlphaFold |
Q8VGY7 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000058744
AA Change: K172T
PolyPhen 2
Score 0.332 (Sensitivity: 0.90; Specificity: 0.89)
|
| SMART Domains |
Protein: ENSMUSP00000058312
Gene: ENSMUSG00000050085
AA Change: K172T
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
32 |
312 |
4.2e-100 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
36 |
308 |
2.3e-6 |
PFAM |
|
Pfam:7tm_1
|
42 |
293 |
6.1e-17 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000213536
AA Change: K172T
PolyPhen 2
Score 0.332 (Sensitivity: 0.90; Specificity: 0.89)
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000216337
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000216570
AA Change: K172T
PolyPhen 2
Score 0.332 (Sensitivity: 0.90; Specificity: 0.89)
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.5%
- 10x: 97.1%
- 20x: 94.5%
|
| Validation Efficiency |
92% (35/38) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abcc9 |
A |
G |
6: 142,584,959 (GRCm39) |
W872R |
probably damaging |
Het |
| Abcg3 |
T |
C |
5: 105,086,046 (GRCm39) |
|
probably benign |
Het |
| Adgrv1 |
T |
A |
13: 81,583,824 (GRCm39) |
Q4627L |
probably benign |
Het |
| Armc2 |
T |
C |
10: 41,839,721 (GRCm39) |
I415V |
possibly damaging |
Het |
| Atp1b1 |
C |
T |
1: 164,270,874 (GRCm39) |
R35H |
probably benign |
Het |
| Bcas3 |
A |
G |
11: 85,261,948 (GRCm39) |
M107V |
probably benign |
Het |
| Ccdc43 |
T |
C |
11: 102,583,029 (GRCm39) |
|
probably null |
Het |
| Dtx4 |
A |
C |
19: 12,463,820 (GRCm39) |
S321A |
probably benign |
Het |
| Enox1 |
A |
T |
14: 77,848,826 (GRCm39) |
H379L |
possibly damaging |
Het |
| Evx1 |
A |
T |
6: 52,290,846 (GRCm39) |
D6V |
probably damaging |
Het |
| Fubp1 |
T |
A |
3: 151,926,133 (GRCm39) |
V286E |
probably damaging |
Het |
| Itgav |
T |
C |
2: 83,598,645 (GRCm39) |
V234A |
probably damaging |
Het |
| Khdc3 |
T |
C |
9: 73,010,872 (GRCm39) |
S241P |
possibly damaging |
Het |
| Lipc |
T |
A |
9: 70,727,800 (GRCm39) |
I16F |
probably damaging |
Het |
| Mael |
T |
C |
1: 166,064,437 (GRCm39) |
|
probably benign |
Het |
| Myo7b |
T |
G |
18: 32,102,567 (GRCm39) |
E1487A |
probably damaging |
Het |
| Osgin1 |
A |
G |
8: 120,168,191 (GRCm39) |
H6R |
probably benign |
Het |
| Otog |
C |
T |
7: 45,937,445 (GRCm39) |
T1718I |
possibly damaging |
Het |
| Otogl |
T |
C |
10: 107,663,565 (GRCm39) |
E1002G |
probably damaging |
Het |
| Pkd1l1 |
T |
C |
11: 8,911,983 (GRCm39) |
N241S |
unknown |
Het |
| Psmd9 |
C |
T |
5: 123,372,653 (GRCm39) |
|
probably benign |
Het |
| Secisbp2l |
C |
T |
2: 125,582,657 (GRCm39) |
G933D |
possibly damaging |
Het |
| Slc6a2 |
C |
A |
8: 93,716,846 (GRCm39) |
N337K |
probably damaging |
Het |
| Snx19 |
A |
T |
9: 30,373,688 (GRCm39) |
Q917L |
probably damaging |
Het |
| Srsf3 |
T |
C |
17: 29,255,257 (GRCm39) |
V14A |
probably damaging |
Het |
| Sspo |
G |
A |
6: 48,471,874 (GRCm39) |
V4729I |
probably benign |
Het |
| Syngap1 |
T |
A |
17: 27,172,038 (GRCm39) |
I82N |
probably damaging |
Het |
| Telo2 |
A |
T |
17: 25,325,807 (GRCm39) |
M407K |
probably damaging |
Het |
| Thsd7b |
G |
A |
1: 129,523,107 (GRCm39) |
G47D |
probably damaging |
Het |
| Tradd |
A |
T |
8: 105,987,287 (GRCm39) |
N6K |
possibly damaging |
Het |
| Trim30a |
C |
A |
7: 104,060,396 (GRCm39) |
C460F |
probably benign |
Het |
| Trip13 |
T |
C |
13: 74,066,597 (GRCm39) |
Y318C |
probably damaging |
Het |
| Ubfd1 |
T |
A |
7: 121,667,999 (GRCm39) |
|
probably benign |
Het |
| Uggt1 |
A |
G |
1: 36,215,885 (GRCm39) |
|
probably benign |
Het |
| Wdr7 |
T |
A |
18: 63,857,226 (GRCm39) |
C101S |
possibly damaging |
Het |
| Zfp345 |
T |
C |
2: 150,314,075 (GRCm39) |
I487M |
possibly damaging |
Het |
|
| Other mutations in Or52a33 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01445:Or52a33
|
APN |
7 |
103,289,039 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02972:Or52a33
|
APN |
7 |
103,289,101 (GRCm39) |
missense |
probably damaging |
1.00 |
|
PIT4434001:Or52a33
|
UTSW |
7 |
103,289,054 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1487:Or52a33
|
UTSW |
7 |
103,288,801 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1989:Or52a33
|
UTSW |
7 |
103,288,702 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4595:Or52a33
|
UTSW |
7 |
103,289,308 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4989:Or52a33
|
UTSW |
7 |
103,289,308 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5715:Or52a33
|
UTSW |
7 |
103,289,009 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5840:Or52a33
|
UTSW |
7 |
103,288,463 (GRCm39) |
missense |
probably benign |
0.05 |
|
R6046:Or52a33
|
UTSW |
7 |
103,288,886 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6207:Or52a33
|
UTSW |
7 |
103,289,209 (GRCm39) |
missense |
probably benign |
0.29 |
|
R6294:Or52a33
|
UTSW |
7 |
103,288,798 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6392:Or52a33
|
UTSW |
7 |
103,288,889 (GRCm39) |
missense |
probably benign |
|
|
R6522:Or52a33
|
UTSW |
7 |
103,288,504 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6996:Or52a33
|
UTSW |
7 |
103,289,065 (GRCm39) |
missense |
probably benign |
0.10 |
|
R7069:Or52a33
|
UTSW |
7 |
103,289,167 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7251:Or52a33
|
UTSW |
7 |
103,288,909 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7625:Or52a33
|
UTSW |
7 |
103,289,165 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8309:Or52a33
|
UTSW |
7 |
103,288,658 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8699:Or52a33
|
UTSW |
7 |
103,288,822 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8750:Or52a33
|
UTSW |
7 |
103,289,059 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R8949:Or52a33
|
UTSW |
7 |
103,288,702 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0018:Or52a33
|
UTSW |
7 |
103,288,805 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- GGCTTTAGAACGAGCATTCTGGG -3'
(R):5'- CCATACGCTGTGCATCATGG -3'
Sequencing Primer
(F):5'- CTTTAGAACGAGCATTCTGGGAAGAG -3'
(R):5'- TCATGGAGTCAGCCATCCTAGTAG -3'
|
| Posted On |
2015-04-30 |
Incidental Mutation