Incidental Mutation 'R3973:Gpx6'
ID 312955
Institutional Source Beutler Lab
Gene Symbol Gpx6
Ensembl Gene ENSMUSG00000004341
Gene Name glutathione peroxidase 6
Synonyms 1700020G18Rik, olfactory
MMRRC Submission 040841-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R3973 (G1)
Quality Score 225
Status Validated
Chromosome 13
Chromosomal Location 21496295-21503794 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to A at 21501828 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Tyrosine at position 150 (S150Y)
Ref Sequence ENSEMBL: ENSMUSP00000004453 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000004453]
AlphaFold Q91WR8
Predicted Effect probably damaging
Transcript: ENSMUST00000004453
AA Change: S150Y

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000004453
Gene: ENSMUSG00000004341
AA Change: S150Y

signal peptide 1 19 N/A INTRINSIC
Pfam:GSHPx 40 153 1.2e-43 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000136668
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.4%
  • 10x: 96.8%
  • 20x: 93.3%
Validation Efficiency 98% (61/62)
MGI Phenotype FUNCTION: This gene encodes a member of the glutathione peroxidase family. Glutathione peroxidases catalyze the reduction of a variety of hydroperoxides, using glutathione as a specific electron donor substrate. The mouse and the rat orthologs contain Cys, unlike their human counterpart, which is a selenoprotein containing Sec (selenocysteine) at its active site. Expression of this gene is restricted to embryos and adult olfactory epithelium. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 58 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2510039O18Rik T C 4: 148,029,488 (GRCm39) I486T probably damaging Het
4933427D14Rik T C 11: 72,089,567 (GRCm39) R106G probably damaging Het
Cfap54 A G 10: 92,675,333 (GRCm39) S2863P possibly damaging Het
Copa T A 1: 171,948,812 (GRCm39) S1155T probably benign Het
Crot T C 5: 9,027,541 (GRCm39) T264A probably benign Het
Ddx3y G A Y: 1,267,170 (GRCm39) A232V probably damaging Het
Dst T G 1: 34,050,979 (GRCm39) V25G probably benign Het
Ehbp1 C T 11: 22,087,867 (GRCm39) A406T probably benign Het
Eml5 A T 12: 98,768,724 (GRCm39) probably benign Het
Eps8 A T 6: 137,486,153 (GRCm39) M453K probably benign Het
Galnt3 T C 2: 65,937,374 (GRCm39) D112G possibly damaging Het
Glra4 C T X: 135,663,542 (GRCm39) A336T probably damaging Het
Gmppb A G 9: 107,927,338 (GRCm39) D95G probably benign Het
Gprc6a T C 10: 51,504,544 (GRCm39) Y100C possibly damaging Het
Hsd17b3 A T 13: 64,207,300 (GRCm39) V247D probably damaging Het
Htr7 T C 19: 36,034,160 (GRCm39) D165G probably damaging Het
Igha T C 12: 113,219,972 (GRCm39) probably benign Het
Igsf10 A G 3: 59,239,345 (GRCm39) C279R probably damaging Het
Irak4 A G 15: 94,452,621 (GRCm39) E182G possibly damaging Het
Lipo3 A T 19: 33,535,723 (GRCm39) V274E probably damaging Het
Lrpprc A C 17: 85,078,269 (GRCm39) probably null Het
Mast1 T C 8: 85,645,393 (GRCm39) Y684C probably damaging Het
Mdn1 T C 4: 32,722,363 (GRCm39) F2382L probably benign Het
Mepe C T 5: 104,484,944 (GRCm39) P28L probably benign Het
Mrgpra3 T A 7: 47,239,414 (GRCm39) I171F probably benign Het
Muc2 T A 7: 141,300,541 (GRCm39) probably benign Het
Myh3 C T 11: 66,987,262 (GRCm39) Q1371* probably null Het
Nodal T A 10: 61,258,833 (GRCm39) V90E probably benign Het
Npas4 A T 19: 5,036,579 (GRCm39) H528Q probably benign Het
Nt5dc3 T C 10: 86,660,100 (GRCm39) V382A probably damaging Het
Pcdh18 G A 3: 49,709,035 (GRCm39) T293I probably damaging Het
Phf20l1 A G 15: 66,513,665 (GRCm39) D947G probably damaging Het
Phf8-ps A T 17: 33,285,405 (GRCm39) S466T probably benign Het
Pla2r1 A G 2: 60,279,306 (GRCm39) V758A probably benign Het
Plod2 G T 9: 92,480,672 (GRCm39) G422* probably null Het
Ppp1r12a T C 10: 108,089,341 (GRCm39) V660A probably benign Het
Prdm6 T C 18: 53,673,278 (GRCm39) I186T possibly damaging Het
Prkd3 G A 17: 79,266,570 (GRCm39) probably benign Het
Prrc2a A G 17: 35,376,908 (GRCm39) L734P probably damaging Het
Rnf128 C A X: 138,565,271 (GRCm39) L282I probably damaging Het
Rnf213 A G 11: 119,359,879 (GRCm39) N4424S Het
Scrn3 T C 2: 73,166,121 (GRCm39) S385P possibly damaging Het
Serpina1d A T 12: 103,734,107 (GRCm39) S66T probably benign Het
Setd3 T C 12: 108,131,417 (GRCm39) K3R possibly damaging Het
Slc2a7 A G 4: 150,242,667 (GRCm39) probably null Het
Smad4 G T 18: 73,810,807 (GRCm39) T59K possibly damaging Het
Spc25 A G 2: 69,032,945 (GRCm39) L60P probably damaging Het
Stam A C 2: 14,143,772 (GRCm39) H354P probably damaging Het
Tesk1 C T 4: 43,445,786 (GRCm39) P280S possibly damaging Het
Tmem120a C G 5: 135,765,131 (GRCm39) R254P probably benign Het
Traf5 T C 1: 191,729,837 (GRCm39) T405A probably benign Het
Trav7-4 A G 14: 53,699,119 (GRCm39) S89G probably benign Het
Tsc22d1 T C 14: 76,656,049 (GRCm39) S761P probably damaging Het
Ugt1a10 C A 1: 88,143,862 (GRCm39) H361N probably damaging Het
Ugt2b1 C A 5: 87,065,534 (GRCm39) V502L probably benign Het
Vip T A 10: 5,592,590 (GRCm39) S77T possibly damaging Het
Wdr72 A T 9: 74,125,979 (GRCm39) M1025L probably benign Het
Zfp541 A G 7: 15,806,147 (GRCm39) D94G probably damaging Het
Other mutations in Gpx6
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00674:Gpx6 APN 13 21,497,978 (GRCm39) splice site probably benign
Jaded UTSW 13 21,501,828 (GRCm39) missense probably damaging 1.00
R0648:Gpx6 UTSW 13 21,503,047 (GRCm39) missense probably benign 0.44
R0835:Gpx6 UTSW 13 21,501,238 (GRCm39) missense probably damaging 1.00
R1496:Gpx6 UTSW 13 21,503,090 (GRCm39) missense probably benign
R1538:Gpx6 UTSW 13 21,497,822 (GRCm39) missense possibly damaging 0.82
R1839:Gpx6 UTSW 13 21,496,497 (GRCm39) missense probably benign
R2151:Gpx6 UTSW 13 21,503,141 (GRCm39) missense probably damaging 1.00
R2845:Gpx6 UTSW 13 21,503,045 (GRCm39) critical splice acceptor site probably null
R3785:Gpx6 UTSW 13 21,497,956 (GRCm39) missense probably benign 0.02
R3974:Gpx6 UTSW 13 21,501,828 (GRCm39) missense probably damaging 1.00
R3975:Gpx6 UTSW 13 21,501,828 (GRCm39) missense probably damaging 1.00
R4124:Gpx6 UTSW 13 21,501,815 (GRCm39) nonsense probably null
R4707:Gpx6 UTSW 13 21,496,434 (GRCm39) nonsense probably null
R4751:Gpx6 UTSW 13 21,501,234 (GRCm39) missense probably damaging 1.00
R4784:Gpx6 UTSW 13 21,496,434 (GRCm39) nonsense probably null
R4785:Gpx6 UTSW 13 21,496,434 (GRCm39) nonsense probably null
R5002:Gpx6 UTSW 13 21,497,858 (GRCm39) missense probably damaging 1.00
R5403:Gpx6 UTSW 13 21,501,813 (GRCm39) missense probably damaging 1.00
R6004:Gpx6 UTSW 13 21,503,239 (GRCm39) missense probably benign
R6030:Gpx6 UTSW 13 21,496,510 (GRCm39) missense probably benign 0.01
R6030:Gpx6 UTSW 13 21,496,510 (GRCm39) missense probably benign 0.01
R7223:Gpx6 UTSW 13 21,501,840 (GRCm39) critical splice donor site probably null
R9701:Gpx6 UTSW 13 21,501,777 (GRCm39) missense probably benign 0.13
X0017:Gpx6 UTSW 13 21,501,209 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer

Sequencing Primer
Posted On 2015-04-30