Mutagenetix > Incidental Mutation

Incidental Mutation 'R0388:Dcaf17'

31390

Institutional Source

Beutler Lab

Gene Symbol

Dcaf17

Ensembl Gene

ENSMUSG00000041966

Gene Name

DDB1 and CUL4 associated factor 17

Synonyms

4833418A01Rik, 2810055O12Rik, A030004A10Rik, A930009G19Rik

MMRRC Submission

038594-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.200) question?

Stock #

R0388 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

70885672-70929486 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 70908915 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Arginine at position 277 (K277R)

Ref Sequence

ENSEMBL: ENSMUSP00000120016 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000064141] [ENSMUST00000102701] [ENSMUST00000112159] [ENSMUST00000112167] [ENSMUST00000135357] [ENSMUST00000154704]

AlphaFold

Q3TUL7

Predicted Effect

probably benign
Transcript: ENSMUST00000064141
AA Change: K277R

PolyPhen 2 Score 0.024 (Sensitivity: 0.95; Specificity: 0.81)

Predicted Effect

probably benign
Transcript: ENSMUST00000102701
AA Change: K277R

PolyPhen 2 Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)

Predicted Effect

probably benign
Transcript: ENSMUST00000112159

Predicted Effect

probably benign
Transcript: ENSMUST00000112167

Predicted Effect

unknown
Transcript: ENSMUST00000130292
AA Change: K291R

SMART Domains

Protein: ENSMUSP00000117830
Gene: ENSMUSG00000041966
AA Change: K291R

Domain	Start	End	E-Value	Type
Pfam:DCAF17	55	405	6.6e-166	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132619

Predicted Effect

probably benign
Transcript: ENSMUST00000135357

SMART Domains

Protein: ENSMUSP00000118011
Gene: ENSMUSG00000041966

Domain	Start	End	E-Value	Type
transmembrane domain	98	117	N/A	INTRINSIC
transmembrane domain	132	151	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000154704
AA Change: K277R

PolyPhen 2 Score 0.024 (Sensitivity: 0.95; Specificity: 0.81)

Predicted Effect

probably benign
Transcript: ENSMUST00000136299

Meta Mutation Damage Score

0.0707

Coding Region Coverage

1x: 99.0%
3x: 98.0%
10x: 95.6%
20x: 90.7%

Validation Efficiency

100% (67/67)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a nuclear transmembrane protein that associates with cullin 4A/damaged DNA binding protein 1 ubiquitin ligase complex. Mutations in this gene are associated with Woodhouse-Sakati syndrome. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2009]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2010315B03Rik	T	C	9: 124,057,789 (GRCm39)		probably benign	Het
Acsbg1	T	C	9: 54,516,347 (GRCm39)	K678R	probably damaging	Het
Adgrg6	A	G	10: 14,326,402 (GRCm39)	I410T	probably benign	Het
Afap1l2	A	C	19: 56,905,674 (GRCm39)		probably benign	Het
Aox1	T	C	1: 58,393,565 (GRCm39)	Y1242H	probably damaging	Het
Apoo-ps	T	C	13: 107,551,173 (GRCm39)		noncoding transcript	Het
Camta1	C	A	4: 151,159,597 (GRCm39)	R1614L	probably damaging	Het
Cdh3	C	A	8: 107,265,761 (GRCm39)	T268K	probably damaging	Het
Chd5	T	A	4: 152,456,101 (GRCm39)	H923Q	probably damaging	Het
Chd7	T	C	4: 8,854,560 (GRCm39)	V1967A	probably benign	Het
Cntn3	T	C	6: 102,254,277 (GRCm39)	M222V	probably damaging	Het
Dmbt1	T	C	7: 130,697,779 (GRCm39)		probably benign	Het
Dmpk	T	A	7: 18,818,002 (GRCm39)		probably benign	Het
Dzank1	A	T	2: 144,318,026 (GRCm39)	L714Q	possibly damaging	Het
Efcab3	A	G	11: 105,000,227 (GRCm39)	D272G	possibly damaging	Het
Erbb2	G	C	11: 98,318,177 (GRCm39)	R471P	possibly damaging	Het
Esf1	T	A	2: 139,962,791 (GRCm39)	Y760F	possibly damaging	Het
Fanci	C	A	7: 79,089,378 (GRCm39)	T938K	probably benign	Het
Gnai3	A	G	3: 108,023,073 (GRCm39)		probably benign	Het
Hspg2	T	A	4: 137,238,469 (GRCm39)	C319S	probably damaging	Het
Il12a	T	A	3: 68,602,520 (GRCm39)		probably null	Het
Inpp4a	A	G	1: 37,435,241 (GRCm39)	D837G	probably damaging	Het
Kcnj5	T	A	9: 32,229,159 (GRCm39)	E13V	probably damaging	Het
Kcnq3	T	A	15: 65,871,887 (GRCm39)	Y594F	probably benign	Het
Kif16b	T	C	2: 142,582,857 (GRCm39)	E556G	probably damaging	Het
Kif28	T	C	1: 179,567,654 (GRCm39)	I39V	possibly damaging	Het
Lgi2	T	C	5: 52,711,891 (GRCm39)	E143G	probably damaging	Het
Mast1	T	G	8: 85,642,166 (GRCm39)	I1063L	probably benign	Het
Med12l	T	C	3: 59,000,925 (GRCm39)		probably benign	Het
Mmp19	G	T	10: 128,634,752 (GRCm39)	R456L	probably benign	Het
Mon1b	T	A	8: 114,365,710 (GRCm39)	V346E	probably damaging	Het
Mpv17l	A	T	16: 13,758,863 (GRCm39)	I96L	probably benign	Het
Mrgpra9	A	T	7: 46,902,542 (GRCm39)	M1K	probably null	Het
Mycbp2	A	T	14: 103,394,103 (GRCm39)	H2819Q	probably benign	Het
Nav1	A	C	1: 135,376,655 (GRCm39)		probably benign	Het
Neurl4	T	C	11: 69,802,559 (GRCm39)		probably benign	Het
Ntng2	G	C	2: 29,097,438 (GRCm39)	P341R	probably damaging	Het
Oas1d	A	T	5: 121,055,091 (GRCm39)	Y221F	probably damaging	Het
Or1j19	C	A	2: 36,676,874 (GRCm39)	D112E	probably benign	Het
Or1l4	A	C	2: 37,092,196 (GRCm39)		probably null	Het
Or5al6	A	G	2: 85,976,974 (GRCm39)	Y35H	probably damaging	Het
Osbpl8	A	G	10: 111,108,143 (GRCm39)	M380V	probably benign	Het
Pank1	T	C	19: 34,799,106 (GRCm39)		probably benign	Het
Parn	T	C	16: 13,472,340 (GRCm39)	D169G	possibly damaging	Het
Pknox1	T	A	17: 31,822,166 (GRCm39)	I311N	probably damaging	Het
Pprc1	T	C	19: 46,051,214 (GRCm39)	V248A	possibly damaging	Het
Prkcq	T	C	2: 11,259,045 (GRCm39)	C322R	probably benign	Het
Ptpn13	T	A	5: 103,702,928 (GRCm39)	I1298N	probably benign	Het
Rab11fip3	A	G	17: 26,288,046 (GRCm39)	S36P	probably benign	Het
Rif1	GCCACCA	GCCA	2: 52,000,336 (GRCm39)		probably benign	Het
Sass6	C	A	3: 116,400,957 (GRCm39)		probably benign	Het
Shroom3	G	A	5: 93,099,152 (GRCm39)	G1463D	probably benign	Het
Slc35d1	A	T	4: 103,042,084 (GRCm39)	Y249*	probably null	Het
Slc9a3	C	T	13: 74,269,655 (GRCm39)	P8S	unknown	Het
Slc9a9	T	A	9: 94,821,616 (GRCm39)		probably null	Het
Sting1	A	G	18: 35,868,164 (GRCm39)		probably null	Het
Syne2	T	A	12: 76,033,749 (GRCm39)	M3666K	probably benign	Het
Synpo2	A	G	3: 122,873,546 (GRCm39)	V1140A	probably benign	Het
Thada	A	G	17: 84,538,524 (GRCm39)	F1495L	probably benign	Het
Timeless	A	G	10: 128,077,294 (GRCm39)		probably null	Het
Tlr6	G	T	5: 65,112,548 (GRCm39)	H120N	possibly damaging	Het
Tns3	T	C	11: 8,395,703 (GRCm39)	I1234V	probably benign	Het
Ttll9	A	G	2: 152,842,099 (GRCm39)	S318G	probably benign	Het
Vps13c	T	C	9: 67,830,197 (GRCm39)		probably benign	Het
Zfp933	T	C	4: 147,910,899 (GRCm39)	I232M	probably benign	Het
Zfyve27	T	C	19: 42,178,024 (GRCm39)	S382P	probably damaging	Het

Other mutations in Dcaf17

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00093:Dcaf17	APN	2	70,908,503 (GRCm39)	missense	probably benign	0.03
IGL01125:Dcaf17	APN	2	70,920,149 (GRCm39)	missense	probably benign	0.03
IGL01761:Dcaf17	APN	2	70,886,881 (GRCm39)	missense	probably damaging	1.00
IGL02641:Dcaf17	APN	2	70,912,375 (GRCm39)	missense	probably damaging	1.00
R0081:Dcaf17	UTSW	2	70,908,812 (GRCm39)	splice site	probably benign
R0593:Dcaf17	UTSW	2	70,917,744 (GRCm39)	critical splice donor site	probably null
R0637:Dcaf17	UTSW	2	70,890,763 (GRCm39)	missense	probably damaging	0.99
R0661:Dcaf17	UTSW	2	70,918,779 (GRCm39)	missense	probably damaging	1.00
R1281:Dcaf17	UTSW	2	70,908,500 (GRCm39)	missense	probably damaging	1.00
R1454:Dcaf17	UTSW	2	70,903,517 (GRCm39)	missense	probably damaging	1.00
R1501:Dcaf17	UTSW	2	70,912,332 (GRCm39)	missense	probably damaging	1.00
R1908:Dcaf17	UTSW	2	70,890,713 (GRCm39)	nonsense	probably null
R1919:Dcaf17	UTSW	2	70,908,516 (GRCm39)	splice site	probably null
R2882:Dcaf17	UTSW	2	70,912,371 (GRCm39)	missense	possibly damaging	0.96
R4585:Dcaf17	UTSW	2	70,918,924 (GRCm39)	missense	probably benign	0.00
R4586:Dcaf17	UTSW	2	70,918,924 (GRCm39)	missense	probably benign	0.00
R6093:Dcaf17	UTSW	2	70,912,356 (GRCm39)	missense	possibly damaging	0.51
R7070:Dcaf17	UTSW	2	70,918,857 (GRCm39)	missense	probably benign	0.00
R8289:Dcaf17	UTSW	2	70,885,718 (GRCm39)	missense
R8418:Dcaf17	UTSW	2	70,918,717 (GRCm39)	missense	probably damaging	1.00
R8681:Dcaf17	UTSW	2	70,886,913 (GRCm39)	nonsense	probably null
R8786:Dcaf17	UTSW	2	70,917,744 (GRCm39)	critical splice donor site	probably null
R8879:Dcaf17	UTSW	2	70,893,746 (GRCm39)	missense	possibly damaging	0.85
R9072:Dcaf17	UTSW	2	70,920,136 (GRCm39)	missense	probably benign	0.01
R9312:Dcaf17	UTSW	2	70,908,458 (GRCm39)	missense	probably benign	0.01
R9460:Dcaf17	UTSW	2	70,917,695 (GRCm39)	missense	possibly damaging	0.89

Predicted Primers

PCR Primer
(F):5'- GCACAGTGGGGCATAGTACACTTG -3'
(R):5'- ACCAGAACGGCTCAGCATCCTTAG -3'

Sequencing Primer
(F):5'- GGCCCTTGAATAAAGACATTTTCTCG -3'
(R):5'- catacacacacacacacacac -3'

Posted On

2013-04-24