Mutagenetix > Incidental Mutation

Incidental Mutation 'R4049:Ctr9'

314038

Institutional Source

Beutler Lab

Gene Symbol

Ctr9

Ensembl Gene

ENSMUSG00000005609

Gene Name

CTR9 homolog, Paf1/RNA polymerase II complex component

Synonyms

Sh2bp1, Tsp, Tsbp

MMRRC Submission

041616-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4049 (G1)

Quality Score

207

Status

Validated

Chromosome

Chromosomal Location

110628158-110655584 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 110654750 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Cysteine at position 1094 (R1094C)

Ref Sequence

ENSEMBL: ENSMUSP00000005749 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000005749]

AlphaFold

Q62018

Predicted Effect

unknown
Transcript: ENSMUST00000005749
AA Change: R1094C

SMART Domains

Protein: ENSMUSP00000005749
Gene: ENSMUSG00000005609
AA Change: R1094C

Domain	Start	End	E-Value	Type
TPR	163	196	2.26e-3	SMART
TPR	198	231	2e-4	SMART
low complexity region	232	241	N/A	INTRINSIC
TPR	306	339	4.52e-3	SMART
TPR	341	374	1.39e-3	SMART
TPR	451	484	3.56e-1	SMART
TPR	497	530	7.34e-3	SMART
TPR	531	564	3.24e-4	SMART
Blast:TPR	565	598	2e-14	BLAST
TPR	681	714	9.03e-3	SMART
TPR	717	750	1.6e1	SMART
coiled coil region	828	889	N/A	INTRINSIC
low complexity region	892	916	N/A	INTRINSIC
low complexity region	923	928	N/A	INTRINSIC
low complexity region	932	1002	N/A	INTRINSIC
low complexity region	1005	1028	N/A	INTRINSIC
low complexity region	1034	1050	N/A	INTRINSIC
low complexity region	1072	1090	N/A	INTRINSIC
low complexity region	1133	1159	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123681

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000209912

Meta Mutation Damage Score

0.0869

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 94.6%

Validation Efficiency

100% (65/65)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a component of the PAF1 complex, which associates with RNA polymerase II and functions in transcriptional regulation and elongation. This complex also plays a role in the modification of histones. [provided by RefSeq, Oct 2016]

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb5	T	A	12: 118,832,404 (GRCm39)	E1190V	probably damaging	Het
Arhgef10	A	G	8: 15,029,998 (GRCm39)	T928A	probably benign	Het
Arhgef10l	T	A	4: 140,242,762 (GRCm39)	I836F	probably benign	Het
Blm	T	A	7: 80,152,610 (GRCm39)	T446S	probably benign	Het
Ccdc63	T	A	5: 122,260,813 (GRCm39)	Q237L	probably damaging	Het
Ccn5	A	G	2: 163,670,904 (GRCm39)	D137G	probably damaging	Het
Cep57l1	G	T	10: 41,605,356 (GRCm39)	R130S	probably damaging	Het
Clstn2	T	G	9: 97,339,613 (GRCm39)	E786A	possibly damaging	Het
Col16a1	C	T	4: 129,962,545 (GRCm39)	P540L	probably damaging	Het
Csf2	A	G	11: 54,140,159 (GRCm39)	F61L	probably damaging	Het
Cyp3a41a	A	G	5: 145,650,350 (GRCm39)	C98R	probably damaging	Het
Dthd1	T	A	5: 62,984,508 (GRCm39)	C404*	probably null	Het
Egfem1	A	C	3: 29,740,880 (GRCm39)	H518P	probably benign	Het
Elf3	T	C	1: 135,182,015 (GRCm39)	S369G	probably benign	Het
Eml6	C	T	11: 29,788,577 (GRCm39)	V503M	probably damaging	Het
Enthd1	T	C	15: 80,444,240 (GRCm39)	D105G	probably damaging	Het
Eral1	A	G	11: 77,966,428 (GRCm39)	L250P	probably damaging	Het
Gdf15	A	T	8: 71,082,605 (GRCm39)	M167K	probably benign	Het
Ggps1	T	C	13: 14,228,284 (GRCm39)	K300E	probably benign	Het
Gm8074	G	A	9: 78,229,618 (GRCm39)		noncoding transcript	Het
Herc3	A	G	6: 58,853,822 (GRCm39)	I623V	probably damaging	Het
Mad1l1	A	G	5: 140,118,571 (GRCm39)	S457P	probably damaging	Het
Map1lc3a	G	T	2: 155,119,462 (GRCm39)	V91F	possibly damaging	Het
Map4k3	A	G	17: 80,913,394 (GRCm39)	V617A	probably benign	Het
Mov10l1	T	A	15: 88,879,235 (GRCm39)		probably benign	Het
Mroh2a	A	G	1: 88,186,386 (GRCm39)	S64G	probably benign	Het
Ncor1	G	T	11: 62,220,494 (GRCm39)		probably null	Het
Nfe2	C	T	15: 103,159,364 (GRCm39)	E36K	possibly damaging	Het
Oprm1	G	A	10: 6,779,087 (GRCm39)	V95I	probably benign	Het
Or4a78	T	C	2: 89,498,006 (GRCm39)	I75V	probably benign	Het
Or4c107	A	G	2: 88,789,617 (GRCm39)	K269R	probably benign	Het
Or52d3	T	C	7: 104,229,575 (GRCm39)	F241L	probably benign	Het
Or5d46	T	C	2: 88,174,144 (GRCm39)		probably null	Het
Pcdha9	T	A	18: 37,130,995 (GRCm39)	H21Q	probably benign	Het
Pcolce2	A	T	9: 95,520,808 (GRCm39)	I62F	probably damaging	Het
Pfpl	T	A	19: 12,407,053 (GRCm39)	C435S	probably damaging	Het
Pkhd1l1	G	A	15: 44,361,953 (GRCm39)	C542Y	probably damaging	Het
Plekha5	T	C	6: 140,529,597 (GRCm39)	S75P	probably damaging	Het
Pphln1	C	A	15: 93,362,987 (GRCm39)	A202E	probably damaging	Het
Ppp1r1a	A	G	15: 103,440,881 (GRCm39)	L92P	probably damaging	Het
Prokr2	T	C	2: 132,223,414 (GRCm39)	T43A	probably benign	Het
Rai14	T	C	15: 10,592,298 (GRCm39)	N199S	probably benign	Het
Rasgrp2	T	C	19: 6,454,757 (GRCm39)	L199P	probably damaging	Het
Rnf213	A	C	11: 119,373,274 (GRCm39)	M4939L	possibly damaging	Het
Slc23a2	C	T	2: 131,902,603 (GRCm39)	R533Q	probably benign	Het
Slc7a7	T	C	14: 54,610,548 (GRCm39)		probably null	Het
Snrpd2	T	A	7: 18,885,232 (GRCm39)	V31E	probably damaging	Het
Spire1	G	T	18: 67,662,101 (GRCm39)		probably null	Het
Srsf4	T	C	4: 131,627,854 (GRCm39)		probably benign	Het
Tcf20	A	G	15: 82,737,630 (GRCm39)	S1274P	probably damaging	Het
Tcof1	C	A	18: 60,965,975 (GRCm39)	A376S	possibly damaging	Het
Thsd1	T	A	8: 22,733,180 (GRCm39)	Y76N	possibly damaging	Het
Timm44	A	G	8: 4,310,561 (GRCm39)	V397A	probably benign	Het
Tmc6	G	A	11: 117,669,087 (GRCm39)	T89I	possibly damaging	Het
Trbv31	C	A	6: 41,534,639 (GRCm39)	C107F	probably damaging	Het
Trim37	T	A	11: 87,031,429 (GRCm39)		probably null	Het
Ttll5	T	C	12: 86,059,573 (GRCm39)	V1226A	probably benign	Het
Ube3b	T	C	5: 114,550,931 (GRCm39)	V865A	probably benign	Het
Vmn2r86	A	T	10: 130,282,966 (GRCm39)	M550K	probably damaging	Het
Vps54	C	A	11: 21,250,183 (GRCm39)	T373N	probably benign	Het
Wdr64	T	G	1: 175,633,422 (GRCm39)	I891S	probably benign	Het
Zfhx4	C	T	3: 5,463,919 (GRCm39)	S1384L	probably damaging	Het
Zfp703	A	G	8: 27,469,113 (GRCm39)	E259G	possibly damaging	Het
Zfp933	T	C	4: 147,910,969 (GRCm39)	H209R	probably damaging	Het
Zfp980	A	G	4: 145,429,170 (GRCm39)	H633R	probably damaging	Het

Other mutations in Ctr9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01603:Ctr9	APN	7	110,648,538 (GRCm39)	missense	probably damaging	1.00
IGL02379:Ctr9	APN	7	110,650,726 (GRCm39)	missense	probably damaging	0.99
IGL02451:Ctr9	APN	7	110,642,631 (GRCm39)	nonsense	probably null
IGL03222:Ctr9	APN	7	110,642,257 (GRCm39)	missense	probably benign	0.41
R0023:Ctr9	UTSW	7	110,643,154 (GRCm39)	missense	possibly damaging	0.83
R0023:Ctr9	UTSW	7	110,643,154 (GRCm39)	missense	possibly damaging	0.83
R0586:Ctr9	UTSW	7	110,648,705 (GRCm39)	splice site	probably benign
R0761:Ctr9	UTSW	7	110,645,479 (GRCm39)	missense	probably damaging	0.97
R0834:Ctr9	UTSW	7	110,650,159 (GRCm39)	missense	probably benign	0.06
R1593:Ctr9	UTSW	7	110,642,060 (GRCm39)	missense	possibly damaging	0.82
R1711:Ctr9	UTSW	7	110,654,870 (GRCm39)	missense	unknown
R1828:Ctr9	UTSW	7	110,643,165 (GRCm39)	splice site	probably null
R1838:Ctr9	UTSW	7	110,651,510 (GRCm39)	missense	possibly damaging	0.93
R2037:Ctr9	UTSW	7	110,646,014 (GRCm39)	missense	probably benign	0.04
R2171:Ctr9	UTSW	7	110,646,117 (GRCm39)	missense	possibly damaging	0.69
R2512:Ctr9	UTSW	7	110,646,078 (GRCm39)	missense	probably damaging	1.00
R2850:Ctr9	UTSW	7	110,652,653 (GRCm39)	missense	unknown
R2851:Ctr9	UTSW	7	110,652,653 (GRCm39)	missense	unknown
R3124:Ctr9	UTSW	7	110,652,653 (GRCm39)	missense	unknown
R4280:Ctr9	UTSW	7	110,645,930 (GRCm39)	intron	probably benign
R4350:Ctr9	UTSW	7	110,648,525 (GRCm39)	missense	probably damaging	1.00
R4352:Ctr9	UTSW	7	110,648,525 (GRCm39)	missense	probably damaging	1.00
R4460:Ctr9	UTSW	7	110,646,101 (GRCm39)	missense	probably benign	0.01
R4740:Ctr9	UTSW	7	110,634,578 (GRCm39)	missense	probably benign	0.31
R5039:Ctr9	UTSW	7	110,642,064 (GRCm39)	missense	probably benign	0.28
R5216:Ctr9	UTSW	7	110,644,665 (GRCm39)	missense	possibly damaging	0.68
R5647:Ctr9	UTSW	7	110,654,751 (GRCm39)	missense	unknown
R5677:Ctr9	UTSW	7	110,643,209 (GRCm39)	missense	probably benign	0.45
R6907:Ctr9	UTSW	7	110,629,449 (GRCm39)	missense	probably damaging	1.00
R7371:Ctr9	UTSW	7	110,633,014 (GRCm39)	missense	probably damaging	0.99
R7391:Ctr9	UTSW	7	110,642,378 (GRCm39)	nonsense	probably null
R7405:Ctr9	UTSW	7	110,642,921 (GRCm39)	missense	possibly damaging	0.90
R7406:Ctr9	UTSW	7	110,652,615 (GRCm39)	missense	unknown
R7502:Ctr9	UTSW	7	110,633,133 (GRCm39)	missense	probably benign	0.26
R7760:Ctr9	UTSW	7	110,645,808 (GRCm39)	missense	probably damaging	1.00
R7814:Ctr9	UTSW	7	110,633,134 (GRCm39)	missense	probably benign	0.08
R7870:Ctr9	UTSW	7	110,651,618 (GRCm39)	missense	unknown
R8026:Ctr9	UTSW	7	110,633,099 (GRCm39)	missense	probably damaging	1.00
R8035:Ctr9	UTSW	7	110,633,664 (GRCm39)	missense	probably damaging	1.00
R8066:Ctr9	UTSW	7	110,633,104 (GRCm39)	nonsense	probably null
R8080:Ctr9	UTSW	7	110,650,774 (GRCm39)	missense	possibly damaging	0.91
R8789:Ctr9	UTSW	7	110,642,933 (GRCm39)	missense	possibly damaging	0.82
R8840:Ctr9	UTSW	7	110,642,237 (GRCm39)	missense	probably damaging	0.96
R9015:Ctr9	UTSW	7	110,643,108 (GRCm39)	missense	probably benign	0.01
Z1088:Ctr9	UTSW	7	110,629,431 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CAGCGATTCTGATGACGACG -3'
(R):5'- ATCATCTGACCCATGTTCTGAGC -3'

Sequencing Primer
(F):5'- TTCTGATGACGACGAGAGGCC -3'
(R):5'- ACCCATGTTCTGAGCCTCGG -3'

Posted On

2015-04-30