Incidental Mutation 'R4049:Rai14'
| ID |
314062 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Rai14
|
| Ensembl Gene |
ENSMUSG00000022246 |
| Gene Name |
retinoic acid induced 14 |
| Synonyms |
1700008J19Rik, 1700020L11Rik, Ankycorbin, Norpeg |
| MMRRC Submission |
041616-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly essential
(E-score: 0.515)
|
| Stock # |
R4049 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
15 |
| Chromosomal Location |
10568969-10714624 bp(-) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 10592212 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Asparagine to Serine
at position 199
(N199S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000153969
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000090339]
[ENSMUST00000169385]
[ENSMUST00000227506]
|
| AlphaFold |
Q9EP71 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000090339
AA Change: N199S
PolyPhen 2
Score 0.091 (Sensitivity: 0.93; Specificity: 0.85)
|
| SMART Domains |
Protein: ENSMUSP00000087815
Gene: ENSMUSG00000022246
AA Change: N199S
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:ANK
|
18 |
48 |
4e-10 |
BLAST |
|
ANK
|
52 |
81 |
1.66e-6 |
SMART |
|
ANK
|
85 |
117 |
7.02e-5 |
SMART |
|
ANK
|
118 |
147 |
2.1e-3 |
SMART |
|
ANK
|
151 |
180 |
2.16e-5 |
SMART |
|
ANK
|
184 |
213 |
2.85e-5 |
SMART |
|
ANK
|
217 |
247 |
9.33e2 |
SMART |
|
low complexity region
|
343 |
357 |
N/A |
INTRINSIC |
|
Blast:HAMP
|
595 |
646 |
6e-19 |
BLAST |
|
low complexity region
|
897 |
931 |
N/A |
INTRINSIC |
|
Blast:ANK
|
944 |
977 |
6e-13 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000169385
AA Change: N199S
PolyPhen 2
Score 0.091 (Sensitivity: 0.93; Specificity: 0.85)
|
| SMART Domains |
Protein: ENSMUSP00000126325
Gene: ENSMUSG00000022246
AA Change: N199S
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:ANK
|
18 |
48 |
4e-10 |
BLAST |
|
ANK
|
52 |
81 |
1.66e-6 |
SMART |
|
ANK
|
85 |
117 |
7.02e-5 |
SMART |
|
ANK
|
118 |
147 |
2.1e-3 |
SMART |
|
ANK
|
151 |
180 |
2.16e-5 |
SMART |
|
ANK
|
184 |
213 |
2.85e-5 |
SMART |
|
ANK
|
217 |
247 |
9.33e2 |
SMART |
|
low complexity region
|
343 |
357 |
N/A |
INTRINSIC |
|
Blast:HAMP
|
595 |
646 |
6e-19 |
BLAST |
|
low complexity region
|
897 |
931 |
N/A |
INTRINSIC |
|
Blast:ANK
|
944 |
977 |
6e-13 |
BLAST |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000226530
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000226737
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000227506
AA Change: N199S
PolyPhen 2
Score 0.299 (Sensitivity: 0.91; Specificity: 0.89)
|
| Meta Mutation Damage Score |
0.1151 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.1%
- 20x: 94.6%
|
| Validation Efficiency |
100% (65/65) |
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 65 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abcb5 |
T |
A |
12: 118,868,669 (GRCm38) |
E1190V |
probably damaging |
Het |
| Arhgef10 |
A |
G |
8: 14,979,998 (GRCm38) |
T928A |
probably benign |
Het |
| Arhgef10l |
T |
A |
4: 140,515,451 (GRCm38) |
I836F |
probably benign |
Het |
| Blm |
T |
A |
7: 80,502,862 (GRCm38) |
T446S |
probably benign |
Het |
| Ccdc63 |
T |
A |
5: 122,122,750 (GRCm38) |
Q237L |
probably damaging |
Het |
| Cep57l1 |
G |
T |
10: 41,729,360 (GRCm38) |
R130S |
probably damaging |
Het |
| Clstn2 |
T |
G |
9: 97,457,560 (GRCm38) |
E786A |
possibly damaging |
Het |
| Col16a1 |
C |
T |
4: 130,068,752 (GRCm38) |
P540L |
probably damaging |
Het |
| Csf2 |
A |
G |
11: 54,249,333 (GRCm38) |
F61L |
probably damaging |
Het |
| Ctr9 |
C |
T |
7: 111,055,543 (GRCm38) |
R1094C |
unknown |
Het |
| Cyp3a41a |
A |
G |
5: 145,713,540 (GRCm38) |
C98R |
probably damaging |
Het |
| Dthd1 |
T |
A |
5: 62,827,165 (GRCm38) |
C404* |
probably null |
Het |
| Egfem1 |
A |
C |
3: 29,686,731 (GRCm38) |
H518P |
probably benign |
Het |
| Elf3 |
T |
C |
1: 135,254,277 (GRCm38) |
S369G |
probably benign |
Het |
| Eml6 |
C |
T |
11: 29,838,577 (GRCm38) |
V503M |
probably damaging |
Het |
| Enthd1 |
T |
C |
15: 80,560,039 (GRCm38) |
D105G |
probably damaging |
Het |
| Eral1 |
A |
G |
11: 78,075,602 (GRCm38) |
L250P |
probably damaging |
Het |
| Gdf15 |
A |
T |
8: 70,629,955 (GRCm38) |
M167K |
probably benign |
Het |
| Ggps1 |
T |
C |
13: 14,053,699 (GRCm38) |
K300E |
probably benign |
Het |
| Gm8074 |
G |
A |
9: 78,322,336 (GRCm38) |
|
noncoding transcript |
Het |
| Herc3 |
A |
G |
6: 58,876,837 (GRCm38) |
I623V |
probably damaging |
Het |
| Mad1l1 |
A |
G |
5: 140,132,816 (GRCm38) |
S457P |
probably damaging |
Het |
| Map1lc3a |
G |
T |
2: 155,277,542 (GRCm38) |
V91F |
possibly damaging |
Het |
| Map4k3 |
A |
G |
17: 80,605,965 (GRCm38) |
V617A |
probably benign |
Het |
| Mov10l1 |
T |
A |
15: 88,995,032 (GRCm38) |
|
probably benign |
Het |
| Mroh2a |
A |
G |
1: 88,258,664 (GRCm38) |
S64G |
probably benign |
Het |
| Ncor1 |
G |
T |
11: 62,329,668 (GRCm38) |
|
probably null |
Het |
| Nfe2 |
C |
T |
15: 103,250,937 (GRCm38) |
E36K |
possibly damaging |
Het |
| Olfr1176 |
T |
C |
2: 88,343,800 (GRCm38) |
|
probably null |
Het |
| Olfr1212 |
A |
G |
2: 88,959,273 (GRCm38) |
K269R |
probably benign |
Het |
| Olfr1251 |
T |
C |
2: 89,667,662 (GRCm38) |
I75V |
probably benign |
Het |
| Olfr653 |
T |
C |
7: 104,580,368 (GRCm38) |
F241L |
probably benign |
Het |
| Oprm1 |
G |
A |
10: 6,829,087 (GRCm38) |
V95I |
probably benign |
Het |
| Pcdha9 |
T |
A |
18: 36,997,942 (GRCm38) |
H21Q |
probably benign |
Het |
| Pcolce2 |
A |
T |
9: 95,638,755 (GRCm38) |
I62F |
probably damaging |
Het |
| Pfpl |
T |
A |
19: 12,429,689 (GRCm38) |
C435S |
probably damaging |
Het |
| Pkhd1l1 |
G |
A |
15: 44,498,557 (GRCm38) |
C542Y |
probably damaging |
Het |
| Plekha5 |
T |
C |
6: 140,583,871 (GRCm38) |
S75P |
probably damaging |
Het |
| Pphln1 |
C |
A |
15: 93,465,106 (GRCm38) |
A202E |
probably damaging |
Het |
| Ppp1r1a |
A |
G |
15: 103,532,454 (GRCm38) |
L92P |
probably damaging |
Het |
| Prokr2 |
T |
C |
2: 132,381,494 (GRCm38) |
T43A |
probably benign |
Het |
| Rasgrp2 |
T |
C |
19: 6,404,727 (GRCm38) |
L199P |
probably damaging |
Het |
| Rnf213 |
A |
C |
11: 119,482,448 (GRCm38) |
M4939L |
possibly damaging |
Het |
| Slc23a2 |
C |
T |
2: 132,060,683 (GRCm38) |
R533Q |
probably benign |
Het |
| Slc7a7 |
T |
C |
14: 54,373,091 (GRCm38) |
|
probably null |
Het |
| Snrpd2 |
T |
A |
7: 19,151,307 (GRCm38) |
V31E |
probably damaging |
Het |
| Spire1 |
G |
T |
18: 67,529,031 (GRCm38) |
|
probably null |
Het |
| Srsf4 |
T |
C |
4: 131,900,543 (GRCm38) |
|
probably benign |
Het |
| Tcf20 |
A |
G |
15: 82,853,429 (GRCm38) |
S1274P |
probably damaging |
Het |
| Tcof1 |
C |
A |
18: 60,832,903 (GRCm38) |
A376S |
possibly damaging |
Het |
| Thsd1 |
T |
A |
8: 22,243,164 (GRCm38) |
Y76N |
possibly damaging |
Het |
| Timm44 |
A |
G |
8: 4,260,561 (GRCm38) |
V397A |
probably benign |
Het |
| Tmc6 |
G |
A |
11: 117,778,261 (GRCm38) |
T89I |
possibly damaging |
Het |
| Trbv31 |
C |
A |
6: 41,557,705 (GRCm38) |
C107F |
probably damaging |
Het |
| Trim37 |
T |
A |
11: 87,140,603 (GRCm38) |
|
probably null |
Het |
| Ttll5 |
T |
C |
12: 86,012,799 (GRCm38) |
V1226A |
probably benign |
Het |
| Ube3b |
T |
C |
5: 114,412,870 (GRCm38) |
V865A |
probably benign |
Het |
| Vmn2r86 |
A |
T |
10: 130,447,097 (GRCm38) |
M550K |
probably damaging |
Het |
| Vps54 |
C |
A |
11: 21,300,183 (GRCm38) |
T373N |
probably benign |
Het |
| Wdr64 |
T |
G |
1: 175,805,856 (GRCm38) |
I891S |
probably benign |
Het |
| Wisp2 |
A |
G |
2: 163,828,984 (GRCm38) |
D137G |
probably damaging |
Het |
| Zfhx4 |
C |
T |
3: 5,398,859 (GRCm38) |
S1384L |
probably damaging |
Het |
| Zfp703 |
A |
G |
8: 26,979,085 (GRCm38) |
E259G |
possibly damaging |
Het |
| Zfp933 |
T |
C |
4: 147,826,512 (GRCm38) |
H209R |
probably damaging |
Het |
| Zfp980 |
A |
G |
4: 145,702,600 (GRCm38) |
H633R |
probably damaging |
Het |
|
| Other mutations in Rai14 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01107:Rai14
|
APN |
15 |
10,599,711 (GRCm38) |
splice site |
probably benign |
|
|
IGL01625:Rai14
|
APN |
15 |
10,572,374 (GRCm38) |
missense |
probably benign |
0.30 |
|
IGL01925:Rai14
|
APN |
15 |
10,595,862 (GRCm38) |
missense |
possibly damaging |
0.88 |
|
IGL02053:Rai14
|
APN |
15 |
10,633,156 (GRCm38) |
missense |
probably benign |
0.00 |
|
IGL02531:Rai14
|
APN |
15 |
10,574,782 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02748:Rai14
|
APN |
15 |
10,589,335 (GRCm38) |
missense |
probably benign |
0.14 |
|
IGL02945:Rai14
|
APN |
15 |
10,574,709 (GRCm38) |
missense |
probably benign |
0.00 |
|
PIT4618001:Rai14
|
UTSW |
15 |
10,575,156 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1400:Rai14
|
UTSW |
15 |
10,571,548 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R1583:Rai14
|
UTSW |
15 |
10,587,916 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1686:Rai14
|
UTSW |
15 |
10,592,196 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R1721:Rai14
|
UTSW |
15 |
10,633,228 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1867:Rai14
|
UTSW |
15 |
10,633,228 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1868:Rai14
|
UTSW |
15 |
10,633,228 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1998:Rai14
|
UTSW |
15 |
10,594,981 (GRCm38) |
splice site |
probably null |
|
|
R2118:Rai14
|
UTSW |
15 |
10,575,166 (GRCm38) |
missense |
probably benign |
0.00 |
|
R3161:Rai14
|
UTSW |
15 |
10,633,164 (GRCm38) |
missense |
possibly damaging |
0.74 |
|
R3162:Rai14
|
UTSW |
15 |
10,633,164 (GRCm38) |
missense |
possibly damaging |
0.74 |
|
R3162:Rai14
|
UTSW |
15 |
10,633,164 (GRCm38) |
missense |
possibly damaging |
0.74 |
|
R4611:Rai14
|
UTSW |
15 |
10,592,138 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4760:Rai14
|
UTSW |
15 |
10,575,690 (GRCm38) |
missense |
possibly damaging |
0.60 |
|
R4863:Rai14
|
UTSW |
15 |
10,572,470 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R5022:Rai14
|
UTSW |
15 |
10,574,506 (GRCm38) |
missense |
probably damaging |
0.96 |
|
R5110:Rai14
|
UTSW |
15 |
10,690,410 (GRCm38) |
start gained |
probably benign |
|
|
R5410:Rai14
|
UTSW |
15 |
10,574,938 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5643:Rai14
|
UTSW |
15 |
10,593,051 (GRCm38) |
missense |
probably benign |
0.03 |
|
R5644:Rai14
|
UTSW |
15 |
10,593,051 (GRCm38) |
missense |
probably benign |
0.03 |
|
R5681:Rai14
|
UTSW |
15 |
10,575,120 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5934:Rai14
|
UTSW |
15 |
10,575,159 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R6333:Rai14
|
UTSW |
15 |
10,574,936 (GRCm38) |
nonsense |
probably null |
|
|
R6338:Rai14
|
UTSW |
15 |
10,574,976 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6864:Rai14
|
UTSW |
15 |
10,633,168 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R7015:Rai14
|
UTSW |
15 |
10,589,315 (GRCm38) |
nonsense |
probably null |
|
|
R7155:Rai14
|
UTSW |
15 |
10,595,003 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
R7480:Rai14
|
UTSW |
15 |
10,571,536 (GRCm38) |
missense |
probably benign |
0.02 |
|
R7574:Rai14
|
UTSW |
15 |
10,593,103 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7578:Rai14
|
UTSW |
15 |
10,593,103 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7578:Rai14
|
UTSW |
15 |
10,574,828 (GRCm38) |
missense |
probably benign |
|
|
R7597:Rai14
|
UTSW |
15 |
10,574,851 (GRCm38) |
missense |
possibly damaging |
0.94 |
|
R7658:Rai14
|
UTSW |
15 |
10,593,103 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7779:Rai14
|
UTSW |
15 |
10,593,026 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7946:Rai14
|
UTSW |
15 |
10,574,201 (GRCm38) |
splice site |
probably null |
|
|
R8171:Rai14
|
UTSW |
15 |
10,633,163 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8195:Rai14
|
UTSW |
15 |
10,575,216 (GRCm38) |
missense |
probably benign |
|
|
R8471:Rai14
|
UTSW |
15 |
10,575,159 (GRCm38) |
missense |
probably benign |
0.01 |
|
R8485:Rai14
|
UTSW |
15 |
10,575,036 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9075:Rai14
|
UTSW |
15 |
10,589,317 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9287:Rai14
|
UTSW |
15 |
10,592,118 (GRCm38) |
missense |
probably benign |
0.14 |
|
R9502:Rai14
|
UTSW |
15 |
10,587,861 (GRCm38) |
missense |
possibly damaging |
0.50 |
|
R9603:Rai14
|
UTSW |
15 |
10,595,030 (GRCm38) |
nonsense |
probably null |
|
|
R9665:Rai14
|
UTSW |
15 |
10,574,717 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9767:Rai14
|
UTSW |
15 |
10,610,041 (GRCm38) |
missense |
probably benign |
0.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- CACAAATTCCTTTATCCTTTTGGGG -3'
(R):5'- GAAGACTGACTGCTATTTGGTG -3'
Sequencing Primer
(F):5'- GTGGATGAATTAAAAATAACCTCGGC -3'
(R):5'- AATACCACCTTATTTCGTCTTGACAG -3'
|
| Posted On |
2015-04-30 |
Incidental Mutation