Incidental Mutation 'R4049:Rasgrp2'
ID |
314075 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Rasgrp2
|
Ensembl Gene |
ENSMUSG00000032946 |
Gene Name |
RAS, guanyl releasing protein 2 |
Synonyms |
Caldaggef1, CalDAG-GEFI |
MMRRC Submission |
041616-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R4049 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
19 |
Chromosomal Location |
6449370-6465246 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 6454757 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Leucine to Proline
at position 199
(L199P)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000129873
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000035716]
[ENSMUST00000113467]
[ENSMUST00000113468]
[ENSMUST00000113469]
[ENSMUST00000113471]
[ENSMUST00000113472]
[ENSMUST00000113476]
[ENSMUST00000138555]
[ENSMUST00000127021]
[ENSMUST00000139522]
[ENSMUST00000113475]
[ENSMUST00000167240]
[ENSMUST00000150713]
[ENSMUST00000146601]
[ENSMUST00000146831]
|
AlphaFold |
Q9QUG9 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000035716
AA Change: L199P
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000041135 Gene: ENSMUSG00000032946 AA Change: L199P
Domain | Start | End | E-Value | Type |
RasGEFN
|
3 |
126 |
3.56e-29 |
SMART |
RasGEF
|
150 |
388 |
1.08e-100 |
SMART |
EFh
|
430 |
458 |
8.25e-3 |
SMART |
EFh
|
459 |
487 |
1.42e1 |
SMART |
C1
|
499 |
548 |
3.22e-14 |
SMART |
low complexity region
|
575 |
595 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000113467
|
SMART Domains |
Protein: ENSMUSP00000109095 Gene: ENSMUSG00000032946
Domain | Start | End | E-Value | Type |
Blast:RasGEFN
|
3 |
24 |
9e-8 |
BLAST |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000113468
|
SMART Domains |
Protein: ENSMUSP00000109096 Gene: ENSMUSG00000032946
Domain | Start | End | E-Value | Type |
RasGEFN
|
3 |
97 |
1.93e-7 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000113469
|
SMART Domains |
Protein: ENSMUSP00000109097 Gene: ENSMUSG00000032946
Domain | Start | End | E-Value | Type |
Blast:RasGEFN
|
3 |
24 |
1e-7 |
BLAST |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000113471
|
SMART Domains |
Protein: ENSMUSP00000109099 Gene: ENSMUSG00000032946
Domain | Start | End | E-Value | Type |
RasGEFN
|
3 |
126 |
7.2e-31 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000113472
|
SMART Domains |
Protein: ENSMUSP00000109100 Gene: ENSMUSG00000032946
Domain | Start | End | E-Value | Type |
RasGEFN
|
3 |
126 |
7.2e-31 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000113476
AA Change: L199P
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000109104 Gene: ENSMUSG00000032946 AA Change: L199P
Domain | Start | End | E-Value | Type |
RasGEFN
|
3 |
126 |
3.56e-29 |
SMART |
RasGEF
|
150 |
388 |
1.08e-100 |
SMART |
EFh
|
430 |
458 |
8.25e-3 |
SMART |
EFh
|
459 |
487 |
1.42e1 |
SMART |
C1
|
499 |
548 |
3.22e-14 |
SMART |
low complexity region
|
575 |
595 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000130480
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000138555
AA Change: L199P
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000121635 Gene: ENSMUSG00000032946 AA Change: L199P
Domain | Start | End | E-Value | Type |
RasGEFN
|
3 |
126 |
3.56e-29 |
SMART |
Pfam:RasGEF
|
151 |
231 |
1.6e-15 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000135532
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000122930
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000133968
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000145611
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000123661
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000124118
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000127021
|
SMART Domains |
Protein: ENSMUSP00000119740 Gene: ENSMUSG00000032946
Domain | Start | End | E-Value | Type |
Blast:RasGEFN
|
3 |
24 |
1e-7 |
BLAST |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000139522
|
SMART Domains |
Protein: ENSMUSP00000123036 Gene: ENSMUSG00000032946
Domain | Start | End | E-Value | Type |
RasGEFN
|
3 |
125 |
6.02e-27 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000113475
|
SMART Domains |
Protein: ENSMUSP00000109103 Gene: ENSMUSG00000032946
Domain | Start | End | E-Value | Type |
RasGEFN
|
3 |
126 |
7.2e-31 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000167240
AA Change: L199P
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000129873 Gene: ENSMUSG00000032946 AA Change: L199P
Domain | Start | End | E-Value | Type |
RasGEFN
|
3 |
126 |
3.56e-29 |
SMART |
RasGEF
|
150 |
388 |
1.08e-100 |
SMART |
EFh
|
430 |
458 |
8.25e-3 |
SMART |
EFh
|
459 |
487 |
1.42e1 |
SMART |
C1
|
499 |
548 |
3.22e-14 |
SMART |
low complexity region
|
575 |
595 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000148906
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000152022
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000149205
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000150713
|
SMART Domains |
Protein: ENSMUSP00000120949 Gene: ENSMUSG00000032946
Domain | Start | End | E-Value | Type |
RasGEFN
|
3 |
95 |
6.73e-7 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000146601
|
SMART Domains |
Protein: ENSMUSP00000117681 Gene: ENSMUSG00000032946
Domain | Start | End | E-Value | Type |
Blast:RasGEFN
|
3 |
58 |
1e-35 |
BLAST |
SCOP:d1bkds_
|
9 |
58 |
1e-8 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000146831
|
SMART Domains |
Protein: ENSMUSP00000120630 Gene: ENSMUSG00000032946
Domain | Start | End | E-Value | Type |
RasGEFN
|
3 |
126 |
3.56e-29 |
SMART |
|
Meta Mutation Damage Score |
0.9419 |
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.1%
- 20x: 94.6%
|
Validation Efficiency |
100% (65/65) |
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a brain-enriched nucleotide exchanged factor that contains an N-terminal GEF domain, 2 tandem repeats of EF-hand calcium-binding motifs, and a C-terminal diacylglycerol/phorbol ester-binding domain. This protein can activate small GTPases, including RAS and RAP1/RAS3. The nucleotide exchange activity of this protein can be stimulated by calcium and diacylglycerol. Four alternatively spliced transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Jan 2016] PHENOTYPE: Mice homozygous for a knock-out allele do not undergo spontaneous hemorrhaging but exhibit impaired platelet aggregation, resistance to collagen-induced thrombosis, and increased bleeding times after tail transection. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 65 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abcb5 |
T |
A |
12: 118,832,404 (GRCm39) |
E1190V |
probably damaging |
Het |
Arhgef10 |
A |
G |
8: 15,029,998 (GRCm39) |
T928A |
probably benign |
Het |
Arhgef10l |
T |
A |
4: 140,242,762 (GRCm39) |
I836F |
probably benign |
Het |
Blm |
T |
A |
7: 80,152,610 (GRCm39) |
T446S |
probably benign |
Het |
Ccdc63 |
T |
A |
5: 122,260,813 (GRCm39) |
Q237L |
probably damaging |
Het |
Ccn5 |
A |
G |
2: 163,670,904 (GRCm39) |
D137G |
probably damaging |
Het |
Cep57l1 |
G |
T |
10: 41,605,356 (GRCm39) |
R130S |
probably damaging |
Het |
Clstn2 |
T |
G |
9: 97,339,613 (GRCm39) |
E786A |
possibly damaging |
Het |
Col16a1 |
C |
T |
4: 129,962,545 (GRCm39) |
P540L |
probably damaging |
Het |
Csf2 |
A |
G |
11: 54,140,159 (GRCm39) |
F61L |
probably damaging |
Het |
Ctr9 |
C |
T |
7: 110,654,750 (GRCm39) |
R1094C |
unknown |
Het |
Cyp3a41a |
A |
G |
5: 145,650,350 (GRCm39) |
C98R |
probably damaging |
Het |
Dthd1 |
T |
A |
5: 62,984,508 (GRCm39) |
C404* |
probably null |
Het |
Egfem1 |
A |
C |
3: 29,740,880 (GRCm39) |
H518P |
probably benign |
Het |
Elf3 |
T |
C |
1: 135,182,015 (GRCm39) |
S369G |
probably benign |
Het |
Eml6 |
C |
T |
11: 29,788,577 (GRCm39) |
V503M |
probably damaging |
Het |
Enthd1 |
T |
C |
15: 80,444,240 (GRCm39) |
D105G |
probably damaging |
Het |
Eral1 |
A |
G |
11: 77,966,428 (GRCm39) |
L250P |
probably damaging |
Het |
Gdf15 |
A |
T |
8: 71,082,605 (GRCm39) |
M167K |
probably benign |
Het |
Ggps1 |
T |
C |
13: 14,228,284 (GRCm39) |
K300E |
probably benign |
Het |
Gm8074 |
G |
A |
9: 78,229,618 (GRCm39) |
|
noncoding transcript |
Het |
Herc3 |
A |
G |
6: 58,853,822 (GRCm39) |
I623V |
probably damaging |
Het |
Mad1l1 |
A |
G |
5: 140,118,571 (GRCm39) |
S457P |
probably damaging |
Het |
Map1lc3a |
G |
T |
2: 155,119,462 (GRCm39) |
V91F |
possibly damaging |
Het |
Map4k3 |
A |
G |
17: 80,913,394 (GRCm39) |
V617A |
probably benign |
Het |
Mov10l1 |
T |
A |
15: 88,879,235 (GRCm39) |
|
probably benign |
Het |
Mroh2a |
A |
G |
1: 88,186,386 (GRCm39) |
S64G |
probably benign |
Het |
Ncor1 |
G |
T |
11: 62,220,494 (GRCm39) |
|
probably null |
Het |
Nfe2 |
C |
T |
15: 103,159,364 (GRCm39) |
E36K |
possibly damaging |
Het |
Oprm1 |
G |
A |
10: 6,779,087 (GRCm39) |
V95I |
probably benign |
Het |
Or4a78 |
T |
C |
2: 89,498,006 (GRCm39) |
I75V |
probably benign |
Het |
Or4c107 |
A |
G |
2: 88,789,617 (GRCm39) |
K269R |
probably benign |
Het |
Or52d3 |
T |
C |
7: 104,229,575 (GRCm39) |
F241L |
probably benign |
Het |
Or5d46 |
T |
C |
2: 88,174,144 (GRCm39) |
|
probably null |
Het |
Pcdha9 |
T |
A |
18: 37,130,995 (GRCm39) |
H21Q |
probably benign |
Het |
Pcolce2 |
A |
T |
9: 95,520,808 (GRCm39) |
I62F |
probably damaging |
Het |
Pfpl |
T |
A |
19: 12,407,053 (GRCm39) |
C435S |
probably damaging |
Het |
Pkhd1l1 |
G |
A |
15: 44,361,953 (GRCm39) |
C542Y |
probably damaging |
Het |
Plekha5 |
T |
C |
6: 140,529,597 (GRCm39) |
S75P |
probably damaging |
Het |
Pphln1 |
C |
A |
15: 93,362,987 (GRCm39) |
A202E |
probably damaging |
Het |
Ppp1r1a |
A |
G |
15: 103,440,881 (GRCm39) |
L92P |
probably damaging |
Het |
Prokr2 |
T |
C |
2: 132,223,414 (GRCm39) |
T43A |
probably benign |
Het |
Rai14 |
T |
C |
15: 10,592,298 (GRCm39) |
N199S |
probably benign |
Het |
Rnf213 |
A |
C |
11: 119,373,274 (GRCm39) |
M4939L |
possibly damaging |
Het |
Slc23a2 |
C |
T |
2: 131,902,603 (GRCm39) |
R533Q |
probably benign |
Het |
Slc7a7 |
T |
C |
14: 54,610,548 (GRCm39) |
|
probably null |
Het |
Snrpd2 |
T |
A |
7: 18,885,232 (GRCm39) |
V31E |
probably damaging |
Het |
Spire1 |
G |
T |
18: 67,662,101 (GRCm39) |
|
probably null |
Het |
Srsf4 |
T |
C |
4: 131,627,854 (GRCm39) |
|
probably benign |
Het |
Tcf20 |
A |
G |
15: 82,737,630 (GRCm39) |
S1274P |
probably damaging |
Het |
Tcof1 |
C |
A |
18: 60,965,975 (GRCm39) |
A376S |
possibly damaging |
Het |
Thsd1 |
T |
A |
8: 22,733,180 (GRCm39) |
Y76N |
possibly damaging |
Het |
Timm44 |
A |
G |
8: 4,310,561 (GRCm39) |
V397A |
probably benign |
Het |
Tmc6 |
G |
A |
11: 117,669,087 (GRCm39) |
T89I |
possibly damaging |
Het |
Trbv31 |
C |
A |
6: 41,534,639 (GRCm39) |
C107F |
probably damaging |
Het |
Trim37 |
T |
A |
11: 87,031,429 (GRCm39) |
|
probably null |
Het |
Ttll5 |
T |
C |
12: 86,059,573 (GRCm39) |
V1226A |
probably benign |
Het |
Ube3b |
T |
C |
5: 114,550,931 (GRCm39) |
V865A |
probably benign |
Het |
Vmn2r86 |
A |
T |
10: 130,282,966 (GRCm39) |
M550K |
probably damaging |
Het |
Vps54 |
C |
A |
11: 21,250,183 (GRCm39) |
T373N |
probably benign |
Het |
Wdr64 |
T |
G |
1: 175,633,422 (GRCm39) |
I891S |
probably benign |
Het |
Zfhx4 |
C |
T |
3: 5,463,919 (GRCm39) |
S1384L |
probably damaging |
Het |
Zfp703 |
A |
G |
8: 27,469,113 (GRCm39) |
E259G |
possibly damaging |
Het |
Zfp933 |
T |
C |
4: 147,910,969 (GRCm39) |
H209R |
probably damaging |
Het |
Zfp980 |
A |
G |
4: 145,429,170 (GRCm39) |
H633R |
probably damaging |
Het |
|
Other mutations in Rasgrp2 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01013:Rasgrp2
|
APN |
19 |
6,454,413 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03053:Rasgrp2
|
APN |
19 |
6,457,362 (GRCm39) |
splice site |
probably benign |
|
afar
|
UTSW |
19 |
6,453,595 (GRCm39) |
critical splice donor site |
probably null |
|
thither
|
UTSW |
19 |
6,454,757 (GRCm39) |
missense |
probably damaging |
1.00 |
R1593:Rasgrp2
|
UTSW |
19 |
6,453,490 (GRCm39) |
missense |
possibly damaging |
0.77 |
R1604:Rasgrp2
|
UTSW |
19 |
6,457,087 (GRCm39) |
missense |
possibly damaging |
0.62 |
R2016:Rasgrp2
|
UTSW |
19 |
6,463,195 (GRCm39) |
missense |
probably benign |
0.01 |
R2017:Rasgrp2
|
UTSW |
19 |
6,463,195 (GRCm39) |
missense |
probably benign |
0.01 |
R2119:Rasgrp2
|
UTSW |
19 |
6,454,425 (GRCm39) |
missense |
probably benign |
0.00 |
R2120:Rasgrp2
|
UTSW |
19 |
6,454,425 (GRCm39) |
missense |
probably benign |
0.00 |
R2122:Rasgrp2
|
UTSW |
19 |
6,454,425 (GRCm39) |
missense |
probably benign |
0.00 |
R2124:Rasgrp2
|
UTSW |
19 |
6,454,425 (GRCm39) |
missense |
probably benign |
0.00 |
R3879:Rasgrp2
|
UTSW |
19 |
6,463,920 (GRCm39) |
missense |
probably benign |
0.07 |
R4655:Rasgrp2
|
UTSW |
19 |
6,454,876 (GRCm39) |
intron |
probably benign |
|
R5250:Rasgrp2
|
UTSW |
19 |
6,454,343 (GRCm39) |
missense |
probably damaging |
1.00 |
R5320:Rasgrp2
|
UTSW |
19 |
6,458,864 (GRCm39) |
splice site |
probably null |
|
R5620:Rasgrp2
|
UTSW |
19 |
6,455,031 (GRCm39) |
missense |
probably damaging |
1.00 |
R5933:Rasgrp2
|
UTSW |
19 |
6,452,543 (GRCm39) |
missense |
probably damaging |
1.00 |
R6155:Rasgrp2
|
UTSW |
19 |
6,452,531 (GRCm39) |
missense |
probably damaging |
1.00 |
R6157:Rasgrp2
|
UTSW |
19 |
6,452,531 (GRCm39) |
missense |
probably damaging |
1.00 |
R6867:Rasgrp2
|
UTSW |
19 |
6,463,213 (GRCm39) |
missense |
probably benign |
0.00 |
R7237:Rasgrp2
|
UTSW |
19 |
6,454,838 (GRCm39) |
missense |
possibly damaging |
0.79 |
R7575:Rasgrp2
|
UTSW |
19 |
6,454,397 (GRCm39) |
missense |
probably damaging |
0.99 |
R7659:Rasgrp2
|
UTSW |
19 |
6,451,857 (GRCm39) |
missense |
probably damaging |
0.98 |
R7744:Rasgrp2
|
UTSW |
19 |
6,455,031 (GRCm39) |
missense |
probably damaging |
1.00 |
R7960:Rasgrp2
|
UTSW |
19 |
6,464,839 (GRCm39) |
missense |
probably benign |
|
R7975:Rasgrp2
|
UTSW |
19 |
6,458,589 (GRCm39) |
missense |
probably damaging |
1.00 |
R8415:Rasgrp2
|
UTSW |
19 |
6,454,781 (GRCm39) |
missense |
probably damaging |
1.00 |
R8470:Rasgrp2
|
UTSW |
19 |
6,453,595 (GRCm39) |
critical splice donor site |
probably null |
|
R8745:Rasgrp2
|
UTSW |
19 |
6,463,949 (GRCm39) |
missense |
probably damaging |
1.00 |
R8853:Rasgrp2
|
UTSW |
19 |
6,464,855 (GRCm39) |
missense |
probably damaging |
0.98 |
R8897:Rasgrp2
|
UTSW |
19 |
6,453,100 (GRCm39) |
missense |
probably benign |
0.15 |
R9108:Rasgrp2
|
UTSW |
19 |
6,458,890 (GRCm39) |
missense |
probably damaging |
1.00 |
R9127:Rasgrp2
|
UTSW |
19 |
6,454,438 (GRCm39) |
missense |
possibly damaging |
0.91 |
R9725:Rasgrp2
|
UTSW |
19 |
6,463,907 (GRCm39) |
missense |
probably benign |
0.07 |
R9725:Rasgrp2
|
UTSW |
19 |
6,454,694 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- GGGCGGTTTCATCAAATGACAG -3'
(R):5'- TGTTGAAGTTCTGCAGCTGC -3'
Sequencing Primer
(F):5'- CGGTTTCATCAAATGACAGAGGGAG -3'
(R):5'- TGCAGCAGCCTCTGGAAG -3'
|
Posted On |
2015-04-30 |