Mutagenetix > Incidental Mutation

Incidental Mutation 'R0390:Ifrd1'

31628

Institutional Source

Beutler Lab

Gene Symbol

Ifrd1

Ensembl Gene

ENSMUSG00000001627

Gene Name

interferon-related developmental regulator 1

Synonyms

Tis7, PC4, Ifnl

MMRRC Submission

038596-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.640) question?

Stock #

R0390 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

40201567-40248504 bp(-) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

C to T at 40214094 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000130824 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000001672] [ENSMUST00000164354] [ENSMUST00000165027] [ENSMUST00000169319] [ENSMUST00000169926] [ENSMUST00000171530]

AlphaFold

P19182

Predicted Effect

probably benign
Transcript: ENSMUST00000001672
AA Change: V149I

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)

SMART Domains

Protein: ENSMUSP00000001672
Gene: ENSMUSG00000001627
AA Change: V149I

Domain	Start	End	E-Value	Type
low complexity region	13	31	N/A	INTRINSIC
Pfam:IFRD	40	345	1.1e-115	PFAM
Pfam:IFRD_C	390	443	6.7e-28	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000164354

SMART Domains

Protein: ENSMUSP00000130846
Gene: ENSMUSG00000001627

Domain	Start	End	E-Value	Type
Pfam:IFRD	1	87	1.1e-29	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000165027
AA Change: V101I

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)

SMART Domains

Protein: ENSMUSP00000133028
Gene: ENSMUSG00000001627
AA Change: V101I

Domain	Start	End	E-Value	Type
Pfam:IFRD	1	119	8.6e-44	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000165676

Predicted Effect

probably null
Transcript: ENSMUST00000169319

SMART Domains

Protein: ENSMUSP00000130824
Gene: ENSMUSG00000001627

Domain	Start	End	E-Value	Type
Pfam:IFRD	1	100	8.9e-35	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000169926
AA Change: V101I

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000127673
Gene: ENSMUSG00000001627
AA Change: V101I

Domain	Start	End	E-Value	Type
Pfam:IFRD	1	138	5.6e-50	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000170752

Predicted Effect

probably benign
Transcript: ENSMUST00000171530

SMART Domains

Protein: ENSMUSP00000128635
Gene: ENSMUSG00000001627

Domain	Start	End	E-Value	Type
low complexity region	13	31	N/A	INTRINSIC
Pfam:IFRD	40	137	1.8e-33	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000171553

SMART Domains

Protein: ENSMUSP00000127954
Gene: ENSMUSG00000001627

Domain	Start	End	E-Value	Type
low complexity region	13	31	N/A	INTRINSIC
transmembrane domain	84	106	N/A	INTRINSIC

Meta Mutation Damage Score

0.0786

Coding Region Coverage

1x: 99.1%
3x: 98.1%
10x: 95.9%
20x: 92.0%

Validation Efficiency

98% (110/112)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is an immediate early gene that encodes a protein related to interferon-gamma. This protein may function as a transcriptional co-activator/repressor that controls the growth and differentiation of specific cell types during embryonic development and tissue regeneration. Mutations in this gene are associated with sensory/motor neuropathy with ataxia. This gene may also be involved in modulating the pathogenesis of cystic fibrosis lung disease. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Oct 2010]
PHENOTYPE: Homozygous null mice display impaired muscle regeneration and myogenic differentiation and decreased body weight in older mice. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 110 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A730017C20Rik	T	A	18: 59,075,688	V136E	probably damaging	Het
Adam18	C	T	8: 24,674,054	G38R	probably benign	Het
Ap2m1	T	C	16: 20,541,099	M183T	probably damaging	Het
Apob	A	T	12: 7,988,678	I364F	probably damaging	Het
Arl6	A	T	16: 59,622,421		probably benign	Het
Cand2	A	G	6: 115,774,653	M15V	possibly damaging	Het
Cbl	A	G	9: 44,201,005	F131S	probably damaging	Het
Ccdc151	T	A	9: 21,991,708	H442L	probably benign	Het
Ccdc74a	A	G	16: 17,650,476	S321G	probably benign	Het
Cdc14b	T	C	13: 64,210,192		probably benign	Het
Cep152	T	C	2: 125,576,869		probably benign	Het
Cep290	A	G	10: 100,508,758	E479G	probably benign	Het
Chrm2	T	G	6: 36,524,111	I301R	probably benign	Het
Clec2e	A	G	6: 129,093,468	W197R	probably damaging	Het
Cnot10	G	T	9: 114,629,150	S96*	probably null	Het
Col19a1	A	G	1: 24,289,655		probably benign	Het
Csmd2	T	C	4: 128,133,673		probably benign	Het
Cthrc1	A	T	15: 39,086,764	*172L	probably null	Het
Cul9	A	T	17: 46,528,589	I821N	probably benign	Het
Daam1	G	C	12: 71,975,304		probably benign	Het
Dhx58	A	T	11: 100,699,264	I398N	probably damaging	Het
Dip2b	T	A	15: 100,193,913	H844Q	probably damaging	Het
Dmac2	A	G	7: 25,621,029	D50G	probably damaging	Het
Dmxl1	C	A	18: 49,879,362	Q1529K	probably benign	Het
Dtna	C	T	18: 23,597,501	P315L	probably damaging	Het
Ep300	T	C	15: 81,640,116	S1382P	unknown	Het
Fat2	A	T	11: 55,310,777	N490K	probably damaging	Het
Flg2	T	A	3: 93,200,355		probably benign	Het
Gm13084	T	A	4: 143,811,699	D234V	probably benign	Het
Gpatch1	T	C	7: 35,281,381		probably benign	Het
Grin2a	C	A	16: 9,579,585	K879N	possibly damaging	Het
Hacd3	A	C	9: 65,001,022	I164S	possibly damaging	Het
Hinfp	A	C	9: 44,298,948	C197G	probably damaging	Het
Hsd17b12	T	C	2: 94,114,990		probably benign	Het
Hsd3b1	A	T	3: 98,853,039	L212Q	probably damaging	Het
Igf2bp2	A	G	16: 22,081,801	F129L	possibly damaging	Het
Kirrel3	T	A	9: 35,020,163	I409N	probably damaging	Het
Klhdc10	T	C	6: 30,447,412	I204T	probably damaging	Het
Kpna6	A	T	4: 129,657,804	S65R	possibly damaging	Het
Lama3	A	T	18: 12,407,563	D308V	probably benign	Het
Larp4b	T	A	13: 9,158,107		probably null	Het
Lgr6	C	T	1: 134,994,010	A199T	probably damaging	Het
Lyzl1	A	T	18: 4,169,175	T11S	probably benign	Het
Man1c1	A	G	4: 134,578,315	L366P	probably damaging	Het
Mef2a	A	G	7: 67,251,724	M100T	probably damaging	Het
Mettl13	G	A	1: 162,538,889	H474Y	possibly damaging	Het
Mmp3	A	G	9: 7,451,320	D352G	probably benign	Het
Mns1	T	C	9: 72,452,804	I412T	probably damaging	Het
Mon2	T	C	10: 123,007,021	D1501G	probably null	Het
Mylk	G	T	16: 34,875,620	G242W	probably damaging	Het
Nav1	T	C	1: 135,449,966	D1715G	possibly damaging	Het
Nckap1l	T	C	15: 103,453,883	S2P	probably damaging	Het
Nek3	A	T	8: 22,128,729		probably benign	Het
Nfrkb	A	G	9: 31,388,897		probably benign	Het
Nlrp4d	T	C	7: 10,388,778	D53G	probably benign	Het
Nol8	T	C	13: 49,662,152	S561P	probably damaging	Het
Nuf2	A	C	1: 169,525,297		probably benign	Het
Ofcc1	T	A	13: 40,015,313	D866V	possibly damaging	Het
Olfr195	A	G	16: 59,149,299	I150V	probably benign	Het
Optn	A	G	2: 5,046,195	L125P	probably benign	Het
Otoa	T	A	7: 121,131,341	F588Y	probably benign	Het
Pappa	T	A	4: 65,351,613		probably null	Het
Pde5a	T	G	3: 122,835,583	C635W	probably damaging	Het
Pdgfb	A	T	15: 80,003,419		probably null	Het
Pih1d2	T	A	9: 50,621,046	C135S	probably damaging	Het
Plcg1	G	T	2: 160,752,366	C361F	probably damaging	Het
Ppp4r4	T	C	12: 103,601,360		probably benign	Het
Prdm10	G	A	9: 31,349,268		probably null	Het
Prex2	T	A	1: 11,089,706		probably null	Het
Prss56	T	G	1: 87,184,730		probably null	Het
Prtg	A	G	9: 72,844,958	K209E	probably benign	Het
Ptprc	G	A	1: 138,122,575	T36I	possibly damaging	Het
Rasgrp4	A	G	7: 29,145,860	Y302C	probably damaging	Het
Rb1cc1	T	A	1: 6,248,634	M759K	probably damaging	Het
Rbm15b	T	A	9: 106,885,998	M324L	probably benign	Het
Rcbtb2	T	C	14: 73,178,547	V500A	probably damaging	Het
Rgs6	A	G	12: 83,133,677	K434R	probably damaging	Het
Rims1	C	T	1: 22,596,526	A125T	possibly damaging	Het
Robo3	A	G	9: 37,422,177	V746A	probably benign	Het
Rtl1	C	T	12: 109,591,386	E1340K	unknown	Het
Sacs	G	A	14: 61,205,640	D1712N	possibly damaging	Het
Samd4b	G	A	7: 28,403,977	P19S	probably benign	Het
Samhd1	T	C	2: 157,114,231	Y347C	probably damaging	Het
Sema6d	T	A	2: 124,658,490	I393N	probably damaging	Het
Sigmar1	C	T	4: 41,741,243	A4T	probably benign	Het
Skint9	C	A	4: 112,389,179	L245F	probably benign	Het
Slc35f5	T	C	1: 125,585,095	L372P	probably damaging	Het
Smc1b	A	T	15: 85,066,277	I1182N	probably damaging	Het
Smyd3	A	G	1: 178,957,573		probably benign	Het
Sptlc1	T	C	13: 53,337,612	D417G	probably benign	Het
Sv2c	T	C	13: 96,088,708	N31S	probably benign	Het
Tjp1	T	C	7: 65,314,990	D811G	probably damaging	Het
Top2b	A	G	14: 16,418,442	T1221A	probably benign	Het
Tph2	T	C	10: 115,174,109	D182G	probably damaging	Het
Traf6	C	T	2: 101,688,588	Q141*	probably null	Het
Ttn	T	C	2: 76,756,931	D21574G	probably damaging	Het
Uba2	T	A	7: 34,151,021	N367I	probably benign	Het
Ube2b	T	C	11: 51,988,602		probably benign	Het
Ubr5	G	T	15: 38,030,672	L426I	probably benign	Het
Ugt2a2	T	A	5: 87,464,148	H301L	probably benign	Het
Upf2	T	A	2: 6,018,894		probably benign	Het
Utrn	T	C	10: 12,710,060	D991G	probably benign	Het
Vmn2r25	T	C	6: 123,823,181	D734G	probably damaging	Het
Vmn2r68	C	G	7: 85,233,258		probably null	Het
Vmn2r68	T	A	7: 85,233,249		probably benign	Het
Vwf	T	A	6: 125,626,361	Y891*	probably null	Het
Wwox	C	T	8: 114,706,278	T228I	probably benign	Het
Zer1	C	T	2: 30,108,213		probably benign	Het
Zfp180	C	T	7: 24,104,707	H184Y	possibly damaging	Het
Zfp68	A	T	5: 138,607,225	Y279N	probably benign	Het

Other mutations in Ifrd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02186:Ifrd1	APN	12	40214093	missense	probably benign	0.00
IGL02442:Ifrd1	APN	12	40216317	splice site	probably benign
IGL02942:Ifrd1	APN	12	40217376	critical splice donor site	probably null
IGL03119:Ifrd1	APN	12	40212334	missense	probably null	0.03
R0107:Ifrd1	UTSW	12	40214081	missense	probably damaging	1.00
R0138:Ifrd1	UTSW	12	40207130	splice site	probably benign
R0627:Ifrd1	UTSW	12	40206987	critical splice donor site	probably null
R2061:Ifrd1	UTSW	12	40213245	missense	probably benign	0.00
R5779:Ifrd1	UTSW	12	40203370	missense	probably damaging	1.00
R5915:Ifrd1	UTSW	12	40213096	missense	possibly damaging	0.94
R6000:Ifrd1	UTSW	12	40216244	missense	possibly damaging	0.52
R6539:Ifrd1	UTSW	12	40203435	missense	probably damaging	1.00
R6751:Ifrd1	UTSW	12	40203914	splice site	probably null
R6800:Ifrd1	UTSW	12	40223158	unclassified	probably benign
R8117:Ifrd1	UTSW	12	40212351	missense	probably benign
R8795:Ifrd1	UTSW	12	40213077	missense	possibly damaging	0.47
R9345:Ifrd1	UTSW	12	40217459	missense	possibly damaging	0.87
R9507:Ifrd1	UTSW	12	40217226	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- TTGGGTGTTGAGTCTGAACCGACC -3'
(R):5'- AGCAGCCCTGTTAGTGTGAGTTCC -3'

Sequencing Primer
(F):5'- TCTGAACCGACCTGTAAATTTTAATC -3'
(R):5'- GCAAATCTGTTTGGAACACTGG -3'

Posted On

2013-04-24