Mutagenetix > Incidental Mutation

Incidental Mutation 'R2061:Cdhr2'

316292

Institutional Source

Beutler Lab

Gene Symbol

Cdhr2

Ensembl Gene

ENSMUSG00000034918

Gene Name

cadherin-related family member 2

Synonyms

LOC268663, Pcdh24

MMRRC Submission

040066-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.061) question?

Stock #

R2061 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

54701461-54736662 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 54720818 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 531 (V531A)

Ref Sequence

ENSEMBL: ENSMUSP00000043596 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000037145]

AlphaFold

E9Q7P9

Predicted Effect

probably damaging
Transcript: ENSMUST00000037145
AA Change: V531A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000043596
Gene: ENSMUSG00000034918
AA Change: V531A

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
CA	48	122	8.62e-15	SMART
CA	146	239	1.4e-2	SMART
CA	263	351	2.19e-16	SMART
CA	391	478	4.22e-9	SMART
CA	503	584	2.15e-24	SMART
CA	605	693	6.78e-22	SMART
CA	715	805	1.78e-16	SMART
CA	830	925	7.57e-11	SMART
CA	950	1042	7.1e-2	SMART
low complexity region	1121	1147	N/A	INTRINSIC
transmembrane domain	1153	1175	N/A	INTRINSIC
low complexity region	1195	1209	N/A	INTRINSIC
low complexity region	1234	1250	N/A	INTRINSIC
low complexity region	1264	1277	N/A	INTRINSIC

Meta Mutation Damage Score

0.3174

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.5%
20x: 95.9%

Validation Efficiency

99% (124/125)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the protocadherin family, which represents a subset of the larger cadherin superfamily. The members of the protocadherin family encode non-classical cadherins that function as calcium-dependent cell-cell adhesion molecules. This protocadherin represents a new candidate for tumor suppression. Alternatively spliced transcript variants that encode the same protein have been identified. [provided by RefSeq, Jan 2010]

Allele List at MGI

Other mutations in this stock

Total: 122 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1300017J02Rik	T	C	9: 103,268,314	M395V	probably benign	Het
2610507B11Rik	T	A	11: 78,268,749	C541*	probably null	Het
9130011E15Rik	C	T	19: 45,978,667	R12Q	probably damaging	Het
A4gnt	T	C	9: 99,620,359	S191P	probably damaging	Het
AI314180	G	T	4: 58,824,270	P1116T	probably damaging	Het
Ak2	C	T	4: 129,008,197	A221V	probably damaging	Het
Akap9	T	A	5: 3,961,010	V571E	probably damaging	Het
Amph	G	T	13: 19,125,035	E428*	probably null	Het
Arnt2	T	A	7: 84,343,870	D154V	probably damaging	Het
Arrdc1	G	A	2: 24,926,352	Q202*	probably null	Het
Ate1	A	G	7: 130,510,913	C72R	probably damaging	Het
Atox1	A	G	11: 55,454,898	V22A	possibly damaging	Het
Bbs12	A	T	3: 37,319,066	M3L	probably damaging	Het
BC067074	T	A	13: 113,318,094	W225R	probably damaging	Het
Bfsp1	A	G	2: 143,862,678	V85A	probably benign	Het
Caskin2	C	A	11: 115,803,630	V382F	probably benign	Het
Ccdc39	T	A	3: 33,819,896	M596L	probably damaging	Het
Cd22	C	T	7: 30,870,105	V529M	probably damaging	Het
Cd22	A	C	7: 30,876,156	Y154D	probably benign	Het
Cdadc1	T	A	14: 59,581,334	E348D	probably damaging	Het
Cdk11b	A	G	4: 155,641,604		probably benign	Het
Cebpa	G	T	7: 35,119,522	R35L	probably damaging	Het
Chat	T	C	14: 32,446,873	N235S	probably benign	Het
Col12a1	T	A	9: 79,617,705	I2725F	possibly damaging	Het
Cracr2b	A	G	7: 141,465,280	E231G	probably damaging	Het
Cryaa	G	T	17: 31,681,055	A151S	probably benign	Het
Dab1	A	T	4: 104,678,741	I116F	probably damaging	Het
Ddx43	C	A	9: 78,396,104	N75K	probably benign	Het
Dmbt1	T	G	7: 131,099,133	C1014G	possibly damaging	Het
Dner	C	A	1: 84,405,989	C558F	probably damaging	Het
Dsc2	A	G	18: 20,032,399	V839A	possibly damaging	Het
Dsg3	C	T	18: 20,527,737	R378*	probably null	Het
Emilin1	C	T	5: 30,917,738	P441L	possibly damaging	Het
Epha6	T	C	16: 59,655,797	M1069V	probably damaging	Het
F930017D23Rik	A	C	10: 43,604,420		noncoding transcript	Het
Faf1	A	T	4: 109,710,808	N22Y	probably damaging	Het
Flrt3	A	T	2: 140,661,453	V85E	probably damaging	Het
Gadl1	T	A	9: 115,941,380	I87N	probably damaging	Het
Galnt14	A	G	17: 73,512,153	F314S	probably damaging	Het
Gba2	A	T	4: 43,574,029	Y141*	probably null	Het
Gdap1	A	T	1: 17,145,465		probably benign	Het
Gfod1	A	T	13: 43,303,243		probably null	Het
Gm14295	C	T	2: 176,810,681	R655*	probably null	Het
Gm4353	A	G	7: 116,083,699	S216P	probably damaging	Het
Gm6605	T	A	7: 38,448,282		noncoding transcript	Het
Hectd1	A	T	12: 51,794,444	D634E	probably damaging	Het
Helz2	A	G	2: 181,240,544	I152T	probably damaging	Het
Hivep1	A	G	13: 42,160,124	K1947E	possibly damaging	Het
Ifrd1	A	T	12: 40,213,245	F144L	probably benign	Het
Itgae	A	T	11: 73,118,622	Q544L	probably benign	Het
Jmjd1c	A	T	10: 67,218,426	E323D	probably damaging	Het
Kdm5a	G	T	6: 120,381,617	R207L	probably benign	Het
Kif5b	C	T	18: 6,226,377		probably null	Het
Lbp	T	C	2: 158,324,579	V351A	probably benign	Het
Lss	A	T	10: 76,546,098		probably null	Het
Madd	A	C	2: 91,161,486		probably benign	Het
Map6	G	A	7: 99,317,472	V503I	probably damaging	Het
Mark1	A	G	1: 184,928,063	L22P	probably damaging	Het
Mcfd2	T	C	17: 87,255,976	N130D	probably damaging	Het
Mcm3ap	A	G	10: 76,470,068	N5S	probably benign	Het
Mdm4	A	T	1: 133,012,651	F48I	probably damaging	Het
Mga	A	T	2: 119,964,980		probably benign	Het
Mknk2	A	T	10: 80,671,557		probably null	Het
Mmp15	T	C	8: 95,370,779	Y459H	possibly damaging	Het
Mthfd1l	A	G	10: 4,103,288	K879R	probably benign	Het
Mycbp2	T	C	14: 103,287,260	K655E	probably damaging	Het
Nasp	T	C	4: 116,611,126	N221D	probably benign	Het
Ndc80	T	C	17: 71,514,218	E245G	probably benign	Het
Nmral1	C	T	16: 4,716,329	E83K	probably damaging	Het
Noa1	T	A	5: 77,304,187	Q550L	possibly damaging	Het
Nutm1	A	T	2: 112,255,752	Y211*	probably null	Het
Olfr1420	T	A	19: 11,896,557	Y179N	probably damaging	Het
Olfr1474	A	G	19: 13,471,241	I90M	probably damaging	Het
Olfr148	G	T	9: 39,613,775	M69I	probably benign	Het
Olfr700	A	C	7: 106,805,768	H231Q	probably benign	Het
Olfr723	T	C	14: 49,929,021	I174M	possibly damaging	Het
Otoa	T	C	7: 121,131,328	F584L	probably damaging	Het
Palb2	G	A	7: 122,124,525	T304I	possibly damaging	Het
Pcolce2	A	T	9: 95,670,176	M121L	probably benign	Het
Pcsk5	T	C	19: 17,454,872	T1460A	probably benign	Het
Pdzrn4	A	T	15: 92,770,160	D731V	probably damaging	Het
Pex11b	C	A	3: 96,635,721	Q12K	possibly damaging	Het
Pigw	G	C	11: 84,877,310	Q398E	probably benign	Het
Pkd1	A	G	17: 24,569,914	E882G	possibly damaging	Het
Pkhd1	A	T	1: 20,612,812	N55K	possibly damaging	Het
Plch2	A	T	4: 155,042,841		probably benign	Het
Plcl1	T	A	1: 55,751,345	L1058Q	probably benign	Het
Ppfia2	T	C	10: 106,837,329	S511P	possibly damaging	Het
Ppfibp2	T	C	7: 107,739,230	L676P	probably damaging	Het
Ppp6c	T	G	2: 39,226,174	D23A	probably damaging	Het
Pqlc1	G	T	18: 80,291,715	A232S	probably benign	Het
Prss30	G	A	17: 23,974,668		probably benign	Het
Ptprz1	T	C	6: 23,049,675		probably null	Het
Rec114	T	A	9: 58,652,905		probably benign	Het
Ryr2	T	C	13: 11,665,878		probably null	Het
Ryr3	A	T	2: 112,663,004	I3715N	possibly damaging	Het
Scin	T	C	12: 40,080,948	Y322C	probably damaging	Het
Scn3a	A	G	2: 65,461,308	V1698A	probably damaging	Het
Scn5a	G	A	9: 119,485,651	S1996L	probably damaging	Het
Serpinb2	A	G	1: 107,522,795	K174R	possibly damaging	Het
Slc16a4	T	C	3: 107,300,711	I179T	probably benign	Het
Slc35b1	T	G	11: 95,385,892	F102V	possibly damaging	Het
Slc6a15	A	G	10: 103,409,734	D526G	probably benign	Het
Spata16	A	G	3: 26,924,370	D495G	probably damaging	Het
Stk11ip	G	A	1: 75,529,584	E583K	possibly damaging	Het
Stk-ps1	T	G	17: 36,398,152		noncoding transcript	Het
Sufu	T	A	19: 46,397,212	I37N	probably damaging	Het
Tacr1	C	T	6: 82,492,554	P140S	probably damaging	Het
Tas1r3	G	A	4: 155,860,470	R765C	probably damaging	Het
Tenm3	C	T	8: 48,342,256		probably null	Het
Tex36	A	T	7: 133,595,223	I55N	probably damaging	Het
Tmem150c	T	C	5: 100,080,028	Y192C	probably damaging	Het
Tmem237	A	G	1: 59,120,286		probably benign	Het
Trim11	A	G	11: 58,982,063	E191G	probably damaging	Het
Ttll3	C	T	6: 113,409,042	A612V	possibly damaging	Het
Ttn	G	A	2: 76,977,122	A89V	probably damaging	Het
Usp37	A	G	1: 74,468,272	F529L	probably damaging	Het
Vmn1r217	A	C	13: 23,114,528	V68G	probably benign	Het
Vwf	T	C	6: 125,591,188	S349P	probably damaging	Het
Wt1	G	A	2: 105,131,157		probably null	Het
Zcchc7	T	A	4: 44,895,838	L262H	probably damaging	Het
Zfp873	A	G	10: 82,060,157	S241G	probably benign	Het

Other mutations in Cdhr2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00565:Cdhr2	APN	13	54718299	missense	probably damaging	1.00
IGL00596:Cdhr2	APN	13	54720997	missense	probably damaging	0.97
IGL00840:Cdhr2	APN	13	54720152	missense	probably damaging	0.96
IGL00956:Cdhr2	APN	13	54718343	missense	probably damaging	1.00
IGL01101:Cdhr2	APN	13	54718135	splice site	probably benign
IGL01150:Cdhr2	APN	13	54731118	missense	probably benign
IGL01412:Cdhr2	APN	13	54725894	missense	probably damaging	1.00
IGL01515:Cdhr2	APN	13	54718238	missense	probably benign	0.17
IGL02005:Cdhr2	APN	13	54719763	missense	probably benign	0.00
IGL02187:Cdhr2	APN	13	54733710	missense	possibly damaging	0.86
IGL02312:Cdhr2	APN	13	54717888	missense	probably null	0.97
IGL02877:Cdhr2	APN	13	54734737	missense	probably benign	0.39
IGL03072:Cdhr2	APN	13	54726661	missense	probably benign	0.00
IGL03263:Cdhr2	APN	13	54718113	missense	possibly damaging	0.75
FR4449:Cdhr2	UTSW	13	54725924	small insertion	probably benign
PIT4494001:Cdhr2	UTSW	13	54718442	critical splice acceptor site	probably null
PIT4498001:Cdhr2	UTSW	13	54718239	missense	possibly damaging	0.75
R0041:Cdhr2	UTSW	13	54726838	missense	probably damaging	1.00
R0149:Cdhr2	UTSW	13	54734007	missense	probably damaging	1.00
R0329:Cdhr2	UTSW	13	54734801	unclassified	probably benign
R0361:Cdhr2	UTSW	13	54734007	missense	probably damaging	1.00
R0365:Cdhr2	UTSW	13	54718292	missense	probably benign	0.00
R0598:Cdhr2	UTSW	13	54726739	missense	probably damaging	1.00
R0774:Cdhr2	UTSW	13	54717855	missense	probably damaging	1.00
R1330:Cdhr2	UTSW	13	54734268	missense	possibly damaging	0.67
R1458:Cdhr2	UTSW	13	54717872	missense	probably damaging	0.99
R1659:Cdhr2	UTSW	13	54719761	missense	probably damaging	1.00
R1698:Cdhr2	UTSW	13	54719581	missense	probably benign	0.00
R2098:Cdhr2	UTSW	13	54715644	missense	probably benign	0.15
R2135:Cdhr2	UTSW	13	54720947	missense	probably damaging	1.00
R2365:Cdhr2	UTSW	13	54718088	missense	probably benign	0.01
R3693:Cdhr2	UTSW	13	54726416	missense	probably damaging	1.00
R3968:Cdhr2	UTSW	13	54726458	missense	probably damaging	1.00
R3970:Cdhr2	UTSW	13	54726458	missense	probably damaging	1.00
R4001:Cdhr2	UTSW	13	54718266	missense	probably benign	0.09
R4003:Cdhr2	UTSW	13	54718266	missense	probably benign	0.09
R4030:Cdhr2	UTSW	13	54717861	missense	probably damaging	1.00
R4088:Cdhr2	UTSW	13	54717888	missense	probably null	0.97
R4256:Cdhr2	UTSW	13	54714005	missense	probably damaging	0.99
R4322:Cdhr2	UTSW	13	54733721	missense	probably benign	0.00
R4396:Cdhr2	UTSW	13	54715665	missense	probably damaging	0.99
R4591:Cdhr2	UTSW	13	54715684	missense	probably benign	0.18
R4726:Cdhr2	UTSW	13	54718539	missense	probably damaging	0.99
R5370:Cdhr2	UTSW	13	54720887	missense	probably damaging	1.00
R5396:Cdhr2	UTSW	13	54736456	missense	probably benign
R5447:Cdhr2	UTSW	13	54733250	missense	probably damaging	1.00
R5654:Cdhr2	UTSW	13	54736536	missense	probably benign
R5727:Cdhr2	UTSW	13	54724308	missense	possibly damaging	0.95
R5771:Cdhr2	UTSW	13	54726695	missense	probably damaging	0.99
R5924:Cdhr2	UTSW	13	54726683	missense	probably benign	0.01
R5928:Cdhr2	UTSW	13	54734019	missense	probably benign	0.01
R6246:Cdhr2	UTSW	13	54719710	missense	probably damaging	1.00
R6351:Cdhr2	UTSW	13	54726776	missense	probably benign	0.16
R6358:Cdhr2	UTSW	13	54736546	missense	probably damaging	0.99
R6433:Cdhr2	UTSW	13	54718512	missense	probably damaging	0.97
R7044:Cdhr2	UTSW	13	54733321	nonsense	probably null
R7341:Cdhr2	UTSW	13	54719492	missense	probably damaging	0.99
R7462:Cdhr2	UTSW	13	54726739	missense	probably damaging	1.00
R7488:Cdhr2	UTSW	13	54717915	missense	probably benign	0.28
R7763:Cdhr2	UTSW	13	54717692	missense	probably damaging	1.00
R7771:Cdhr2	UTSW	13	54718275	missense	probably damaging	1.00
R8050:Cdhr2	UTSW	13	54734222	missense	probably damaging	0.96
R8069:Cdhr2	UTSW	13	54731070	missense	probably damaging	1.00
R8070:Cdhr2	UTSW	13	54719793	missense	probably benign	0.13
R8129:Cdhr2	UTSW	13	54716395	splice site	probably null
R8829:Cdhr2	UTSW	13	54718117	missense	probably damaging	1.00
R8915:Cdhr2	UTSW	13	54726371	missense	probably benign	0.31
R9050:Cdhr2	UTSW	13	54735320	missense	probably benign	0.19
R9113:Cdhr2	UTSW	13	54734887	missense	probably benign	0.22
R9205:Cdhr2	UTSW	13	54713988	missense	probably benign	0.45
R9281:Cdhr2	UTSW	13	54733890	missense	possibly damaging	0.78
R9290:Cdhr2	UTSW	13	54734196	missense	possibly damaging	0.93
R9621:Cdhr2	UTSW	13	54718537	missense
R9647:Cdhr2	UTSW	13	54719581	missense	probably benign	0.00
R9697:Cdhr2	UTSW	13	54719866	missense	probably damaging	1.00
R9736:Cdhr2	UTSW	13	54724228	missense	possibly damaging	0.84
Z1177:Cdhr2	UTSW	13	54715671	missense	probably damaging	1.00
Z1177:Cdhr2	UTSW	13	54718564	missense	probably damaging	1.00
Z1177:Cdhr2	UTSW	13	54726408	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- ACCTGGAAGCATGAGAGCAC -3'
(R):5'- ACAGAGACATTGCCATTCTCCTC -3'

Sequencing Primer
(F):5'- TGAGAGCACTCACAGCTGGAC -3'
(R):5'- ACGTTATAGGAGCCTCGGAC -3'

Posted On

2015-05-15