Mutagenetix > Incidental Mutation

Incidental Mutation 'R4074:Psg23'

316466

Institutional Source

Beutler Lab

Gene Symbol

Psg23

Ensembl Gene

ENSMUSG00000074359

Gene Name

pregnancy-specific glycoprotein 23

Synonyms

1620401C02Rik

MMRRC Submission

040855-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4074 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

18606343-18616501 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 18607118 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Threonine at position 404 (S404T)

Ref Sequence

ENSEMBL: ENSMUSP00000056586 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000057810]

AlphaFold

Q9D2U0

Predicted Effect

possibly damaging
Transcript: ENSMUST00000057810
AA Change: S404T

PolyPhen 2 Score 0.662 (Sensitivity: 0.86; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000056586
Gene: ENSMUSG00000074359
AA Change: S404T

Domain	Start	End	E-Value	Type
IG	39	138	2.03e-4	SMART
IG	159	260	4.16e-1	SMART
IG	276	375	1.25e-4	SMART
IGc2	393	457	4.7e-9	SMART

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.5%

Validation Efficiency

95% (63/66)

MGI Phenotype

PHENOTYPE: Mice homozygous for this spontaneous mutation display no phenotypic abnormalities. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921504E06Rik	T	C	2: 19,480,590	E422G	probably damaging	Het
5830473C10Rik	T	A	5: 90,592,868		probably null	Het
8430408G22Rik	A	G	6: 116,652,068	N124S	possibly damaging	Het
Ace3	A	G	11: 105,997,214	Y287C	probably damaging	Het
Arfgap3	C	T	15: 83,303,129	A510T	probably damaging	Het
Atg12	A	G	18: 46,737,424	F92L	probably benign	Het
Axl	A	G	7: 25,763,911		probably benign	Het
Chgb	C	A	2: 132,793,927	D596E	possibly damaging	Het
Cmtr2	T	A	8: 110,221,217	F53Y	possibly damaging	Het
Cnot10	A	G	9: 114,622,947	F254L	possibly damaging	Het
Crb2	G	T	2: 37,786,843	C251F	probably damaging	Het
Crybg3	A	T	16: 59,555,757		probably benign	Het
Cytl1	A	G	5: 37,735,596	I17V	unknown	Het
D930020B18Rik	A	G	10: 121,656,218		probably benign	Het
Dnah11	A	G	12: 118,045,678	M2083T	probably benign	Het
Dst	A	G	1: 34,192,269	E2656G	probably benign	Het
Dst	T	C	1: 34,228,461	F4995L	probably damaging	Het
Egf	C	T	3: 129,735,969	R264Q	probably benign	Het
Eps15l1	A	G	8: 72,380,284	I482T	probably damaging	Het
Eqtn	A	G	4: 94,919,962	I201T	possibly damaging	Het
Ero1l	A	T	14: 45,292,436		probably null	Het
Etl4	T	C	2: 20,809,219		probably benign	Het
Fcho1	T	C	8: 71,710,369	H672R	probably damaging	Het
Glt6d1	T	C	2: 25,794,127	D289G	probably damaging	Het
Gm16427	A	T	5: 93,485,198	M50K	probably damaging	Het
Gm5134	T	A	10: 76,008,531	W574R	probably damaging	Het
Gm5346	A	T	8: 43,626,350	F279Y	probably damaging	Het
Gm5414	T	C	15: 101,625,553	N332D	probably benign	Het
Gnb3	T	A	6: 124,836,979	E215D	probably benign	Het
Ighv1-30	C	T	12: 114,817,401		noncoding transcript	Het
Ighv1-4	A	G	12: 114,487,527	S15P	possibly damaging	Het
Igkv1-133	T	G	6: 67,725,521	Y74*	probably null	Het
Il17f	G	A	1: 20,777,763		probably benign	Het
Itpr2	C	T	6: 146,373,244		probably null	Het
Krtap31-1	T	C	11: 99,908,232	I87T	possibly damaging	Het
Lilra6	A	T	7: 3,914,890	F85Y	probably benign	Het
Lrig3	C	T	10: 126,013,408	T999I	probably benign	Het
Myh7b	T	C	2: 155,618,758	I277T	probably damaging	Het
Myo3b	T	C	2: 70,289,464	F984S	probably damaging	Het
Naip5	G	A	13: 100,246,064	R46W	probably damaging	Het
Nup205	T	A	6: 35,192,040		probably null	Het
Olfr670	A	T	7: 104,960,716	N5K	probably damaging	Het
Pde11a	C	T	2: 76,337,898	R237H	probably damaging	Het
Pdk4	T	C	6: 5,491,865	N69S	probably benign	Het
Pot1a	T	C	6: 25,752,357		probably null	Het
Rev1	T	G	1: 38,054,238	K1075T	possibly damaging	Het
Rrbp1	T	G	2: 143,963,110	Q1045P	probably benign	Het
Scg2	A	C	1: 79,436,857	F50V	probably damaging	Het
Sel1l3	A	G	5: 53,154,287	Y619H	probably damaging	Het
Slco1a5	A	T	6: 142,268,224	I57K	possibly damaging	Het
Srp72	C	A	5: 76,998,251	T633K	probably benign	Het
Swt1	A	G	1: 151,394,769	V565A	probably benign	Het
Tesk1	A	G	4: 43,443,606	I58V	possibly damaging	Het
Tm2d3	T	A	7: 65,697,750	L49*	probably null	Het
Tmprss11e	T	C	5: 86,715,643	T188A	possibly damaging	Het
Tnxb	A	G	17: 34,671,871	N396S	probably benign	Het
Tuba8	T	A	6: 121,222,797	S147T	probably damaging	Het
Usp8	A	G	2: 126,752,370	D822G	probably damaging	Het
Vmn2r13	T	A	5: 109,156,700	I622F	probably damaging	Het
Vmn2r24	A	T	6: 123,787,415	H417L	possibly damaging	Het
Zfp608	A	T	18: 54,898,108	V920E	probably damaging	Het
Zmym2	T	C	14: 56,903,004	L100P	probably damaging	Het

Other mutations in Psg23

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00814:Psg23	APN	7	18614683	nonsense	probably null
IGL01309:Psg23	APN	7	18614540	missense	probably damaging	1.00
IGL01736:Psg23	APN	7	18612197	missense	possibly damaging	0.76
IGL02142:Psg23	APN	7	18610420	missense	probably benign	0.01
IGL02728:Psg23	APN	7	18606928	missense	probably benign	0.02
IGL03080:Psg23	APN	7	18606985	missense	probably damaging	1.00
IGL03130:Psg23	APN	7	18610416	missense	probably benign	0.25
R0113:Psg23	UTSW	7	18612002	missense	probably benign	0.31
R0137:Psg23	UTSW	7	18614633	missense	probably benign	0.00
R0544:Psg23	UTSW	7	18614682	missense	probably damaging	1.00
R1368:Psg23	UTSW	7	18614720	missense	probably benign	0.13
R1840:Psg23	UTSW	7	18610438	missense	possibly damaging	0.67
R1869:Psg23	UTSW	7	18614618	missense	probably benign	0.09
R1875:Psg23	UTSW	7	18610450	missense	probably benign	0.10
R2041:Psg23	UTSW	7	18614778	missense	possibly damaging	0.78
R2096:Psg23	UTSW	7	18614743	missense	probably damaging	1.00
R3110:Psg23	UTSW	7	18610444	missense	possibly damaging	0.72
R3112:Psg23	UTSW	7	18610444	missense	possibly damaging	0.72
R3790:Psg23	UTSW	7	18612201	missense	probably benign	0.00
R3892:Psg23	UTSW	7	18612041	missense	probably damaging	1.00
R4200:Psg23	UTSW	7	18612065	missense	probably damaging	1.00
R4865:Psg23	UTSW	7	18612114	missense	probably benign	0.14
R5337:Psg23	UTSW	7	18612072	missense	probably benign	0.00
R6016:Psg23	UTSW	7	18612187	missense	probably benign	0.00
R6951:Psg23	UTSW	7	18614711	missense	probably damaging	1.00
R7033:Psg23	UTSW	7	18614744	missense	possibly damaging	0.82
R7212:Psg23	UTSW	7	18607139	missense	probably benign	0.00
R7427:Psg23	UTSW	7	18611983	splice site	probably null
R7527:Psg23	UTSW	7	18614774	missense	probably damaging	1.00
R7814:Psg23	UTSW	7	18606914	makesense	probably null
R7864:Psg23	UTSW	7	18610510	missense	possibly damaging	0.87
R7897:Psg23	UTSW	7	18607183	missense	possibly damaging	0.83
R8155:Psg23	UTSW	7	18612254	missense	probably damaging	1.00
R8358:Psg23	UTSW	7	18614597	missense	probably benign	0.00
R9032:Psg23	UTSW	7	18614735	missense	possibly damaging	0.83
R9085:Psg23	UTSW	7	18614735	missense	possibly damaging	0.83
R9365:Psg23	UTSW	7	18610468	missense	probably damaging	1.00
R9577:Psg23	UTSW	7	18612142	missense	probably benign	0.00
R9688:Psg23	UTSW	7	18610622	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACTGGGAGACTGGTCTTAGAG -3'
(R):5'- ACAGTTTGTAGGTTGCAGATGC -3'

Sequencing Primer
(F):5'- GAGACTGGTCTTAGAGTTGGC -3'
(R):5'- CTATAGTCACAGCTTCAATTTCTCC -3'

Posted On

2015-05-15