Mutagenetix > Incidental Mutation

Incidental Mutation 'R4079:Snap47'

316765

Institutional Source

Beutler Lab

Gene Symbol

Snap47

Ensembl Gene

ENSMUSG00000009894

Gene Name

synaptosomal-associated protein, 47

Synonyms

SNAP-47, 1110031B06Rik

MMRRC Submission

040976-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4079 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

59407134-59451186 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 59428551 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Isoleucine at position 254 (V254I)

Ref Sequence

ENSEMBL: ENSMUSP00000113555 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000010038] [ENSMUST00000120940] [ENSMUST00000136436] [ENSMUST00000156146]

AlphaFold

Q8R570

Predicted Effect

probably benign
Transcript: ENSMUST00000010038
AA Change: V254I

PolyPhen 2 Score 0.377 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000010038
Gene: ENSMUSG00000009894
AA Change: V254I

Domain	Start	End	E-Value	Type
coiled coil region	125	173	N/A	INTRINSIC
SCOP:d1fpza_	181	234	3e-3	SMART
low complexity region	335	349	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000120940
AA Change: V254I

PolyPhen 2 Score 0.377 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000113555
Gene: ENSMUSG00000009894
AA Change: V254I

Domain	Start	End	E-Value	Type
coiled coil region	125	173	N/A	INTRINSIC
SCOP:d1fpza_	181	234	3e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000136436

SMART Domains

Protein: ENSMUSP00000115762
Gene: ENSMUSG00000009894

Domain	Start	End	E-Value	Type
coiled coil region	125	173	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000156146

SMART Domains

Protein: ENSMUSP00000121880
Gene: ENSMUSG00000009894

Domain	Start	End	E-Value	Type
coiled coil region	125	173	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.5%

Validation Efficiency

97% (73/75)

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ago3	C	G	4: 126,353,680 (GRCm38)		probably null	Het
Ankfy1	C	A	11: 72,690,009 (GRCm38)		probably benign	Het
Ap4b1	T	A	3: 103,813,378 (GRCm38)	N121K	probably damaging	Het
Arhgef12	T	C	9: 42,975,292 (GRCm38)	M1131V	probably damaging	Het
Arl5c	A	T	11: 97,993,501 (GRCm38)	I88N	probably damaging	Het
Armc9	A	T	1: 86,213,129 (GRCm38)		probably benign	Het
Bnc1	T	C	7: 81,973,760 (GRCm38)	E573G	probably damaging	Het
Btaf1	A	G	19: 36,986,479 (GRCm38)	T817A	probably benign	Het
C3	C	T	17: 57,205,303 (GRCm38)	D1542N	possibly damaging	Het
Cadm3	A	G	1: 173,341,669 (GRCm38)	V293A	probably benign	Het
Cadps	C	T	14: 12,457,702 (GRCm38)	A1060T	probably benign	Het
Cbfa2t3	A	G	8: 122,647,695 (GRCm38)		probably null	Het
Ccdc18	C	T	5: 108,158,528 (GRCm38)	Q270*	probably null	Het
Cdc45	A	T	16: 18,811,360 (GRCm38)	V19D	probably damaging	Het
Cfap57	C	A	4: 118,598,997 (GRCm38)	S500I	probably benign	Het
Cnga3	A	T	1: 37,241,865 (GRCm38)	Q47L	possibly damaging	Het
Corin	T	C	5: 72,503,883 (GRCm38)	D89G	probably benign	Het
Cox16	A	T	12: 81,474,335 (GRCm38)		probably benign	Het
Cyp2a4	A	G	7: 26,307,366 (GRCm38)	N50S	probably benign	Het
Diaph1	T	A	18: 37,853,583 (GRCm38)	E1116D	possibly damaging	Het
Dlg5	T	C	14: 24,148,260 (GRCm38)	D1535G	possibly damaging	Het
Enpp1	A	G	10: 24,669,007 (GRCm38)		probably null	Het
F13b	T	A	1: 139,501,770 (GRCm38)	F9I	unknown	Het
Fcer1a	C	T	1: 173,225,353 (GRCm38)	C36Y	probably damaging	Het
Fcho2	A	G	13: 98,755,612 (GRCm38)	V318A	probably damaging	Het
Fzd9	A	G	5: 135,249,636 (GRCm38)	V465A	probably benign	Het
Gm10354	A	T	5: 14,977,649 (GRCm38)	L71Q	probably damaging	Het
Hbs1l	T	C	10: 21,352,602 (GRCm38)	V493A	probably damaging	Het
Hgs	T	A	11: 120,483,048 (GRCm38)	S723T	probably benign	Het
Hnrnpul1	C	T	7: 25,726,875 (GRCm38)	R517Q	probably damaging	Het
Kpna7	A	G	5: 145,005,927 (GRCm38)	I83T	possibly damaging	Het
Llgl1	C	A	11: 60,710,284 (GRCm38)		probably null	Het
Lrig3	A	C	10: 126,009,787 (GRCm38)	E695A	probably damaging	Het
Lrpap1	A	G	5: 35,096,037 (GRCm38)	I261T	possibly damaging	Het
Mfn1	T	G	3: 32,542,849 (GRCm38)	L152W	probably damaging	Het
Mog	A	G	17: 37,012,410 (GRCm38)	F212S	probably damaging	Het
Mpeg1	A	G	19: 12,462,270 (GRCm38)	N364S	probably damaging	Het
Mtmr3	C	T	11: 4,491,057 (GRCm38)	R531Q	probably damaging	Het
Mx2	A	G	16: 97,556,036 (GRCm38)	N443S	probably damaging	Het
Nfatc3	T	C	8: 106,079,491 (GRCm38)	Y323H	probably damaging	Het
Nup188	G	A	2: 30,309,878 (GRCm38)	D305N	probably damaging	Het
Obscn	A	G	11: 59,038,363 (GRCm38)	V6145A	probably benign	Het
Olfr1037	A	G	2: 86,085,312 (GRCm38)	V155A	possibly damaging	Het
Olfr686	A	T	7: 105,204,021 (GRCm38)	H107Q	probably damaging	Het
Patl1	C	T	19: 11,931,630 (GRCm38)	A467V	probably damaging	Het
Pdss2	A	T	10: 43,402,522 (GRCm38)	M342L	probably benign	Het
Phax	A	G	18: 56,575,979 (GRCm38)	N183S	possibly damaging	Het
Pnck	A	T	X: 73,658,155 (GRCm38)	V93E	probably damaging	Het
Prol1	A	G	5: 88,328,216 (GRCm38)	N155S	unknown	Het
Ptprk	G	A	10: 28,263,512 (GRCm38)	V78I	probably benign	Het
Ptpru	A	T	4: 131,798,710 (GRCm38)		probably null	Het
Ptprv	A	G	1: 135,110,430 (GRCm38)		noncoding transcript	Het
Ranbp3l	A	G	15: 9,060,757 (GRCm38)	N233S	probably damaging	Het
Rapgefl1	A	G	11: 98,849,977 (GRCm38)	T552A	probably benign	Het
Rasgrp1	A	G	2: 117,285,029 (GRCm38)	S693P	probably benign	Het
Scyl2	A	T	10: 89,640,596 (GRCm38)	M889K	probably benign	Het
Serpina3a	C	T	12: 104,119,675 (GRCm38)	Q320*	probably null	Het
Slc12a1	A	T	2: 125,200,623 (GRCm38)	N733I	possibly damaging	Het
St6galnac2	A	T	11: 116,681,898 (GRCm38)	L244Q	possibly damaging	Het
Syce1	C	A	7: 140,779,896 (GRCm38)	L83F	probably damaging	Het
Tjp2	A	T	19: 24,108,818 (GRCm38)	V780E	possibly damaging	Het
Tns1	G	A	1: 73,995,308 (GRCm38)	R192C	probably damaging	Het
Trav6-3	T	C	14: 53,430,080 (GRCm38)	L3P	possibly damaging	Het
Ung	G	T	5: 114,130,623 (GRCm38)		probably null	Het
Usp32	T	A	11: 85,039,229 (GRCm38)	Y574F	probably damaging	Het

Other mutations in Snap47

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01777:Snap47	APN	11	59,421,651 (GRCm38)	critical splice acceptor site	probably null
IGL02113:Snap47	APN	11	59,428,436 (GRCm38)	missense	probably damaging	0.99
IGL03290:Snap47	APN	11	59,428,598 (GRCm38)	missense	probably damaging	1.00
R0126:Snap47	UTSW	11	59,437,987 (GRCm38)	missense	probably damaging	0.99
R0582:Snap47	UTSW	11	59,428,433 (GRCm38)	nonsense	probably null
R0633:Snap47	UTSW	11	59,428,613 (GRCm38)	missense	probably benign	0.25
R0883:Snap47	UTSW	11	59,438,500 (GRCm38)	utr 5 prime	probably benign
R1657:Snap47	UTSW	11	59,428,770 (GRCm38)	missense	probably benign	0.08
R1855:Snap47	UTSW	11	59,428,333 (GRCm38)	unclassified	probably benign
R2761:Snap47	UTSW	11	59,438,059 (GRCm38)	missense	probably benign	0.01
R4805:Snap47	UTSW	11	59,428,517 (GRCm38)	missense	possibly damaging	0.91
R4960:Snap47	UTSW	11	59,428,543 (GRCm38)	missense	probably damaging	1.00
R5212:Snap47	UTSW	11	59,428,352 (GRCm38)	missense	probably damaging	0.99
R5793:Snap47	UTSW	11	59,438,192 (GRCm38)	missense	probably damaging	1.00
R7243:Snap47	UTSW	11	59,428,722 (GRCm38)	missense	probably benign	0.04
R7603:Snap47	UTSW	11	59,428,547 (GRCm38)	missense	probably damaging	1.00
R7870:Snap47	UTSW	11	59,438,078 (GRCm38)	missense	probably benign	0.11
R8001:Snap47	UTSW	11	59,438,354 (GRCm38)	missense	probably benign	0.20
R9156:Snap47	UTSW	11	59,428,464 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTGTTCCTGAGCACTAAGGC -3'
(R):5'- GCTCTAAGTTTTGGAAGATGCCG -3'

Sequencing Primer
(F):5'- TGAGCACTAAGGCGTCTTC -3'
(R):5'- AATCTCAAGGAAGGTGTGTCTTC -3'

Posted On

2015-05-15