Mutagenetix > Incidental Mutation

Incidental Mutation 'R0391:Nlrp9c'

31689

Institutional Source

Beutler Lab

Gene Symbol

Nlrp9c

Ensembl Gene

ENSMUSG00000040614

Gene Name

NLR family, pyrin domain containing 9C

Synonyms

Nalp9c, Nalp-zeta

MMRRC Submission

038597-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0391 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

26322473-26403700 bp(-) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

A to T at 26371476 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000083106 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000041845] [ENSMUST00000085944]

AlphaFold

Q66X01

Predicted Effect

probably benign
Transcript: ENSMUST00000041845

SMART Domains

Protein: ENSMUSP00000036041
Gene: ENSMUSG00000040614

Domain	Start	End	E-Value	Type
PYRIN	5	87	7.64e-22	SMART
Pfam:NACHT	143	310	5.2e-31	PFAM
LRR	637	664	4.36e1	SMART
Blast:LRR	666	691	3e-6	BLAST
LRR	693	720	1.02e0	SMART
LRR	722	749	3e0	SMART
LRR	750	777	6.88e-4	SMART
LRR	779	806	5.06e0	SMART
LRR	807	834	1.22e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000085944

SMART Domains

Protein: ENSMUSP00000083106
Gene: ENSMUSG00000040614

Domain	Start	End	E-Value	Type
PYRIN	5	87	7.64e-22	SMART
Pfam:NACHT	143	310	2.8e-31	PFAM
LRR	631	658	7.49e0	SMART
LRR	692	719	4.36e1	SMART
Blast:LRR	721	746	8e-6	BLAST
LRR	748	775	1.02e0	SMART
LRR	777	804	3e0	SMART
LRR	805	832	6.88e-4	SMART
LRR	834	861	2.17e0	SMART
LRR	862	889	2.12e-4	SMART
LRR	919	946	1.22e1	SMART

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.2%
10x: 95.9%
20x: 91.8%

Validation Efficiency

97% (97/100)

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9530002B09Rik	T	A	4: 122,701,177 (GRCm38)		probably benign	Het
Abcc2	G	A	19: 43,821,605 (GRCm38)		probably benign	Het
Abcc8	C	G	7: 46,122,173 (GRCm38)	G838A	probably damaging	Het
Akr1c21	G	A	13: 4,581,200 (GRCm38)	A245T	probably damaging	Het
Anapc15-ps	T	C	10: 95,673,277 (GRCm38)	E47G	probably damaging	Het
Apoa1	A	G	9: 46,229,842 (GRCm38)	T79A	probably benign	Het
Atp6v1b1	A	G	6: 83,756,921 (GRCm38)	H378R	possibly damaging	Het
C4b	A	G	17: 34,735,614 (GRCm38)		probably benign	Het
Catsperd	A	T	17: 56,662,821 (GRCm38)	E638D	probably benign	Het
Cckar	C	T	5: 53,706,253 (GRCm38)		probably null	Het
Cfap100	C	T	6: 90,405,339 (GRCm38)		probably benign	Het
Chd1	G	T	17: 15,749,894 (GRCm38)	G970C	probably damaging	Het
Col14a1	A	G	15: 55,446,259 (GRCm38)		probably benign	Het
Col17a1	C	T	19: 47,663,824 (GRCm38)	V698M	probably damaging	Het
Cpeb1	T	C	7: 81,361,725 (GRCm38)	D156G	possibly damaging	Het
Cryl1	A	G	14: 57,303,775 (GRCm38)	Y151H	possibly damaging	Het
Csmd3	C	A	15: 47,657,573 (GRCm38)	V1881L	probably damaging	Het
Ctnnal1	C	T	4: 56,847,921 (GRCm38)	A73T	probably damaging	Het
Cyp2c37	T	C	19: 39,994,506 (GRCm38)	S180P	probably damaging	Het
Cyp2c54	T	C	19: 40,072,169 (GRCm38)	T123A	possibly damaging	Het
Dennd6b	T	C	15: 89,187,214 (GRCm38)	D304G	probably damaging	Het
Dnmt3l	T	C	10: 78,051,916 (GRCm38)		probably benign	Het
Eci1	G	A	17: 24,433,260 (GRCm38)		probably null	Het
Efhc1	A	G	1: 20,960,188 (GRCm38)	Y115C	probably damaging	Het
Ern1	T	A	11: 106,407,178 (GRCm38)	K706*	probably null	Het
Fam129c	T	A	8: 71,602,499 (GRCm38)		probably benign	Het
Ghrl	T	C	6: 113,719,338 (GRCm38)	E31G	probably damaging	Het
Gpr108	A	C	17: 57,243,101 (GRCm38)	V179G	probably benign	Het
Henmt1	A	G	3: 108,958,535 (GRCm38)		probably benign	Het
Ift172	A	G	5: 31,286,667 (GRCm38)	V69A	probably damaging	Het
Il17ra	T	C	6: 120,476,979 (GRCm38)		probably benign	Het
Il17rb	G	T	14: 30,006,155 (GRCm38)		probably null	Het
Il17rb	T	C	14: 30,004,347 (GRCm38)	N95D	probably benign	Het
Iqub	G	A	6: 24,446,155 (GRCm38)	L757F	probably benign	Het
Itpr1	T	C	6: 108,378,167 (GRCm38)	V473A	probably benign	Het
Itpr2	T	G	6: 146,229,773 (GRCm38)	N1978H	probably damaging	Het
Klk1b26	T	A	7: 44,012,727 (GRCm38)	F3Y	probably damaging	Het
Lars	A	G	18: 42,251,363 (GRCm38)	V50A	probably benign	Het
Lax1	G	T	1: 133,680,066 (GRCm38)	H312Q	probably benign	Het
Lctl	T	C	9: 64,122,314 (GRCm38)		probably benign	Het
Lrp2	G	A	2: 69,460,337 (GRCm38)		probably benign	Het
Lrp2	T	A	2: 69,456,858 (GRCm38)	D3745V	probably damaging	Het
Lvrn	A	T	18: 46,850,466 (GRCm38)	H92L	probably benign	Het
March1	A	G	8: 66,418,973 (GRCm38)	T385A	probably damaging	Het
Marf1	C	T	16: 14,142,534 (GRCm38)	A549T	probably damaging	Het
Mbd5	T	C	2: 49,272,416 (GRCm38)	V970A	possibly damaging	Het
Mccc1	A	G	3: 35,963,570 (GRCm38)		probably benign	Het
Mpp4	A	T	1: 59,143,829 (GRCm38)		probably benign	Het
Mrnip	G	A	11: 50,199,920 (GRCm38)	A304T	probably damaging	Het
Muc5b	T	C	7: 141,865,082 (GRCm38)	S3922P	possibly damaging	Het
Myh3	T	A	11: 67,096,507 (GRCm38)		probably benign	Het
Nbea	A	T	3: 56,037,277 (GRCm38)	H555Q	probably damaging	Het
Nmur1	A	T	1: 86,387,678 (GRCm38)	V178E	probably damaging	Het
Nod2	T	G	8: 88,663,778 (GRCm38)	S238A	probably benign	Het
Ogfod1	A	T	8: 94,063,023 (GRCm38)	T451S	probably damaging	Het
Olfr145	G	A	9: 37,897,842 (GRCm38)	G146D	probably benign	Het
Olfr23	T	C	11: 73,941,109 (GRCm38)	F288L	probably damaging	Het
Olfr372	C	T	8: 72,058,400 (GRCm38)	T240M	probably damaging	Het
Olfr716	T	A	7: 107,148,187 (GRCm38)	Y290*	probably null	Het
Pcdh20	T	C	14: 88,468,668 (GRCm38)	I399V	probably benign	Het
Pdlim1	G	T	19: 40,243,573 (GRCm38)	H120Q	probably damaging	Het
Plg	T	C	17: 12,419,081 (GRCm38)	V798A	probably damaging	Het
Polr2c	A	G	8: 94,857,775 (GRCm38)	I39V	possibly damaging	Het
Ppfia2	C	A	10: 106,830,714 (GRCm38)		probably benign	Het
Ppp1r3a	A	T	6: 14,719,697 (GRCm38)	I406N	probably benign	Het
Psg28	A	T	7: 18,426,173 (GRCm38)	M366K	probably benign	Het
Rad54b	T	C	4: 11,601,702 (GRCm38)	I419T	probably damaging	Het
Rnf43	A	G	11: 87,731,282 (GRCm38)	Q403R	possibly damaging	Het
Sema6a	G	A	18: 47,290,045 (GRCm38)		probably null	Het
Slc28a3	A	G	13: 58,569,415 (GRCm38)		probably benign	Het
Smad2	A	T	18: 76,289,037 (GRCm38)		probably null	Het
Smad4	G	A	18: 73,658,649 (GRCm38)	P274S	probably benign	Het
Smchd1	A	T	17: 71,403,154 (GRCm38)	V906D	probably damaging	Het
Soat2	C	A	15: 102,158,753 (GRCm38)	R320S	possibly damaging	Het
Spata33	C	T	8: 123,221,887 (GRCm38)	A57V	probably damaging	Het
Stab1	A	G	14: 31,143,418 (GRCm38)	L1814P	probably benign	Het
Stab2	T	C	10: 86,947,144 (GRCm38)	K680R	probably benign	Het
Stil	A	G	4: 115,041,172 (GRCm38)		probably null	Het
Sympk	T	A	7: 19,046,849 (GRCm38)	L759H	probably benign	Het
Tet1	A	T	10: 62,814,546 (GRCm38)		probably null	Het
Tfpi2	A	T	6: 3,965,460 (GRCm38)	N117K	probably benign	Het
Tle3	A	G	9: 61,416,661 (GRCm38)	Y766C	probably damaging	Het
Trpt1	C	A	19: 6,997,930 (GRCm38)		probably null	Het
Tshz1	A	G	18: 84,016,049 (GRCm38)	F78S	possibly damaging	Het
Ttc1	T	C	11: 43,738,808 (GRCm38)	D177G	probably damaging	Het
Ttc13	T	A	8: 124,674,401 (GRCm38)	Y741F	probably damaging	Het
Ulk3	C	T	9: 57,594,832 (GRCm38)	S462L	probably benign	Het
Utrn	C	T	10: 12,525,333 (GRCm38)		probably benign	Het
V1rd19	A	C	7: 24,003,585 (GRCm38)	T159P	probably damaging	Het
Vars	T	C	17: 35,011,486 (GRCm38)	V515A	possibly damaging	Het
Vmn1r85	A	G	7: 13,084,588 (GRCm38)	Y210H	probably benign	Het
Vmn2r89	A	G	14: 51,455,978 (GRCm38)	T262A	probably damaging	Het
Vps53	G	A	11: 76,121,579 (GRCm38)	T209I	probably benign	Het
Wdfy2	T	C	14: 62,925,133 (GRCm38)	F95L	possibly damaging	Het
Wwp1	G	T	4: 19,627,911 (GRCm38)	S694Y	probably damaging	Het
Zbtb8b	T	A	4: 129,432,670 (GRCm38)	D201V	probably damaging	Het
Zmym5	A	C	14: 56,804,451 (GRCm38)	N123K	possibly damaging	Het

Other mutations in Nlrp9c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00489:Nlrp9c	APN	7	26,384,588 (GRCm38)	missense	probably benign	0.00
IGL00814:Nlrp9c	APN	7	26,384,750 (GRCm38)	missense	probably benign	0.23
IGL00919:Nlrp9c	APN	7	26,394,056 (GRCm38)	nonsense	probably null
IGL01762:Nlrp9c	APN	7	26,385,425 (GRCm38)	missense	probably damaging	1.00
IGL01928:Nlrp9c	APN	7	26,375,422 (GRCm38)	splice site	probably benign
IGL02008:Nlrp9c	APN	7	26,385,151 (GRCm38)	missense	probably benign	0.16
IGL02389:Nlrp9c	APN	7	26,394,207 (GRCm38)	missense	probably benign
IGL02535:Nlrp9c	APN	7	26,372,097 (GRCm38)	missense	probably damaging	1.00
IGL02685:Nlrp9c	APN	7	26,385,557 (GRCm38)	missense	probably damaging	0.98
IGL02904:Nlrp9c	APN	7	26,375,290 (GRCm38)	missense	probably damaging	1.00
IGL02935:Nlrp9c	APN	7	26,385,276 (GRCm38)	missense	probably benign	0.00
IGL03006:Nlrp9c	APN	7	26,372,082 (GRCm38)	missense	probably damaging	0.98
IGL03140:Nlrp9c	APN	7	26,380,489 (GRCm38)	missense	probably benign	0.30
IGL03201:Nlrp9c	APN	7	26,385,108 (GRCm38)	missense	probably benign	0.00
IGL03243:Nlrp9c	APN	7	26,365,032 (GRCm38)	missense	probably damaging	0.99
holy_grail	UTSW	7	26,382,412 (GRCm38)	missense	probably benign
IGL03054:Nlrp9c	UTSW	7	26,382,276 (GRCm38)	splice site	probably null
K7894:Nlrp9c	UTSW	7	26,384,898 (GRCm38)	missense	possibly damaging	0.94
R0018:Nlrp9c	UTSW	7	26,371,998 (GRCm38)	missense	possibly damaging	0.89
R0018:Nlrp9c	UTSW	7	26,371,998 (GRCm38)	missense	possibly damaging	0.89
R0238:Nlrp9c	UTSW	7	26,378,012 (GRCm38)	missense	possibly damaging	0.90
R0238:Nlrp9c	UTSW	7	26,378,012 (GRCm38)	missense	possibly damaging	0.90
R0335:Nlrp9c	UTSW	7	26,394,136 (GRCm38)	missense	possibly damaging	0.92
R0433:Nlrp9c	UTSW	7	26,385,819 (GRCm38)	missense	probably benign	0.20
R1035:Nlrp9c	UTSW	7	26,371,277 (GRCm38)	splice site	probably benign
R1118:Nlrp9c	UTSW	7	26,384,437 (GRCm38)	missense	probably benign	0.01
R1119:Nlrp9c	UTSW	7	26,384,437 (GRCm38)	missense	probably benign	0.01
R1173:Nlrp9c	UTSW	7	26,380,435 (GRCm38)	missense	probably damaging	1.00
R1519:Nlrp9c	UTSW	7	26,378,101 (GRCm38)	missense	possibly damaging	0.88
R1528:Nlrp9c	UTSW	7	26,382,298 (GRCm38)	missense	probably damaging	0.99
R1616:Nlrp9c	UTSW	7	26,384,437 (GRCm38)	missense	probably benign	0.01
R1774:Nlrp9c	UTSW	7	26,394,118 (GRCm38)	missense	probably benign	0.05
R1789:Nlrp9c	UTSW	7	26,380,490 (GRCm38)	missense	probably benign	0.00
R1869:Nlrp9c	UTSW	7	26,384,820 (GRCm38)	nonsense	probably null
R1870:Nlrp9c	UTSW	7	26,384,820 (GRCm38)	nonsense	probably null
R1920:Nlrp9c	UTSW	7	26,384,894 (GRCm38)	missense	probably damaging	1.00
R1987:Nlrp9c	UTSW	7	26,378,056 (GRCm38)	missense	probably benign	0.31
R2022:Nlrp9c	UTSW	7	26,384,796 (GRCm38)	missense	probably damaging	1.00
R2309:Nlrp9c	UTSW	7	26,378,087 (GRCm38)	missense	probably damaging	1.00
R2327:Nlrp9c	UTSW	7	26,375,322 (GRCm38)	missense	probably damaging	1.00
R3405:Nlrp9c	UTSW	7	26,385,282 (GRCm38)	missense	probably benign	0.01
R3548:Nlrp9c	UTSW	7	26,371,451 (GRCm38)	missense	probably damaging	1.00
R3846:Nlrp9c	UTSW	7	26,382,276 (GRCm38)	splice site	probably null
R4179:Nlrp9c	UTSW	7	26,384,661 (GRCm38)	missense	possibly damaging	0.74
R4460:Nlrp9c	UTSW	7	26,378,098 (GRCm38)	missense	probably damaging	1.00
R4669:Nlrp9c	UTSW	7	26,375,368 (GRCm38)	missense	possibly damaging	0.90
R4708:Nlrp9c	UTSW	7	26,384,840 (GRCm38)	missense	probably benign	0.07
R4810:Nlrp9c	UTSW	7	26,378,177 (GRCm38)	splice site	probably null
R4824:Nlrp9c	UTSW	7	26,380,564 (GRCm38)	missense	possibly damaging	0.49
R4915:Nlrp9c	UTSW	7	26,384,460 (GRCm38)	missense	probably benign	0.34
R4996:Nlrp9c	UTSW	7	26,385,747 (GRCm38)	missense	possibly damaging	0.92
R5468:Nlrp9c	UTSW	7	26,365,000 (GRCm38)	missense	probably benign	0.00
R5525:Nlrp9c	UTSW	7	26,384,501 (GRCm38)	missense	probably damaging	1.00
R5526:Nlrp9c	UTSW	7	26,382,366 (GRCm38)	missense	possibly damaging	0.95
R6020:Nlrp9c	UTSW	7	26,384,725 (GRCm38)	missense	probably benign	0.08
R6175:Nlrp9c	UTSW	7	26,378,001 (GRCm38)	splice site	probably null
R6454:Nlrp9c	UTSW	7	26,385,774 (GRCm38)	missense	possibly damaging	0.91
R6493:Nlrp9c	UTSW	7	26,382,387 (GRCm38)	missense	probably damaging	1.00
R6649:Nlrp9c	UTSW	7	26,371,322 (GRCm38)	missense	probably damaging	1.00
R6653:Nlrp9c	UTSW	7	26,371,322 (GRCm38)	missense	probably damaging	1.00
R6739:Nlrp9c	UTSW	7	26,385,425 (GRCm38)	missense	probably damaging	0.99
R6883:Nlrp9c	UTSW	7	26,378,131 (GRCm38)	missense	probably benign	0.18
R7097:Nlrp9c	UTSW	7	26,385,621 (GRCm38)	missense	probably damaging	1.00
R7122:Nlrp9c	UTSW	7	26,385,621 (GRCm38)	missense	probably damaging	1.00
R7174:Nlrp9c	UTSW	7	26,385,297 (GRCm38)	missense	probably benign	0.03
R7365:Nlrp9c	UTSW	7	26,371,397 (GRCm38)	missense	possibly damaging	0.93
R7378:Nlrp9c	UTSW	7	26,365,015 (GRCm38)	missense	probably benign	0.14
R7427:Nlrp9c	UTSW	7	26,371,435 (GRCm38)	missense	probably benign	0.00
R7450:Nlrp9c	UTSW	7	26,364,939 (GRCm38)	missense	probably benign	0.45
R7999:Nlrp9c	UTSW	7	26,385,489 (GRCm38)	missense	possibly damaging	0.94
R8036:Nlrp9c	UTSW	7	26,371,439 (GRCm38)	missense	possibly damaging	0.49
R8056:Nlrp9c	UTSW	7	26,385,687 (GRCm38)	missense	probably damaging	1.00
R8249:Nlrp9c	UTSW	7	26,375,353 (GRCm38)	nonsense	probably null
R8729:Nlrp9c	UTSW	7	26,372,003 (GRCm38)	missense	probably benign	0.12
R9012:Nlrp9c	UTSW	7	26,375,308 (GRCm38)	missense	probably benign	0.18
R9104:Nlrp9c	UTSW	7	26,382,412 (GRCm38)	missense	probably benign
R9106:Nlrp9c	UTSW	7	26,382,412 (GRCm38)	missense	probably benign
R9129:Nlrp9c	UTSW	7	26,378,003 (GRCm38)	critical splice donor site	probably null
R9519:Nlrp9c	UTSW	7	26,385,877 (GRCm38)	missense	possibly damaging	0.91
RF020:Nlrp9c	UTSW	7	26,385,224 (GRCm38)	missense	probably benign
X0065:Nlrp9c	UTSW	7	26,380,430 (GRCm38)	missense	probably damaging	0.99
Z1177:Nlrp9c	UTSW	7	26,384,825 (GRCm38)	missense	possibly damaging	0.54
Z1177:Nlrp9c	UTSW	7	26,384,775 (GRCm38)	missense	probably damaging	1.00
Z1177:Nlrp9c	UTSW	7	26,382,348 (GRCm38)	missense	probably benign	0.28

Predicted Primers

PCR Primer
(F):5'- CCCTGGAGCTGAGGTTATGAAAAGTG -3'
(R):5'- GGGTTAAGAAGTCCAACTAGCATAGGC -3'

Sequencing Primer
(F):5'- TGTATACTCACCCAAGCATATTCAG -3'
(R):5'- tgaggggagagattgggg -3'

Posted On

2013-04-24