Mutagenetix > Incidental Mutations

Incidental Mutation 'R4088:Sypl2'

317458

Institutional Source

Beutler Lab

Gene Symbol

Sypl2

Ensembl Gene

ENSMUSG00000027887

Gene Name

synaptophysin-like 2

Synonyms

Mg29

MMRRC Submission

040981-MU

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4088 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

108211472-108226648 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 108217676 bp

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 123 (I123T)

Ref Sequence

ENSEMBL: ENSMUSP00000116756 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000141387]

Predicted Effect

possibly damaging
Transcript: ENSMUST00000141387
AA Change: I123T

PolyPhen 2 Score 0.936 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000116756
Gene: ENSMUSG00000027887
AA Change: I123T

Domain	Start	End	E-Value	Type
low complexity region	9	65	N/A	INTRINSIC
Pfam:MARVEL	107	309	7.2e-41	PFAM
low complexity region	318	326	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156371

Meta Mutation Damage Score

0.2995

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.5%

Validation Efficiency

96% (55/57)

MGI Phenotype

PHENOTYPE: Mice homozygous for a targeted null mutation are viable and fertile, but exhibit reduced body weight, abnormal skeletal muscle membranes and irregular skeletal muscle contractility. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A430110L20Rik	T	C	1: 181,227,709		noncoding transcript	Het
Alox12b	G	T	11: 69,158,385	V87L	probably benign	Het
Arsk	T	G	13: 76,098,414	N32T	probably benign	Het
Baz1b	T	A	5: 135,216,940	N414K	probably damaging	Het
Cacna1e	A	T	1: 154,412,183		probably null	Het
Cdc73	A	G	1: 143,608,514		probably benign	Het
Cdhr2	A	G	13: 54,717,888	D233G	probably null	Het
Cep250	G	A	2: 155,992,632	R2159K	probably damaging	Het
Col4a4	T	A	1: 82,523,922	Y370F	unknown	Het
Cyp2b9	T	C	7: 26,173,456	L8P	probably damaging	Het
Ddx4	A	G	13: 112,613,761	V386A	probably benign	Het
Dnajc28	G	A	16: 91,616,867	T187M	probably damaging	Het
Dnajc6	T	A	4: 101,639,396	V920E	probably damaging	Het
Eef2kmt	A	T	16: 5,253,035	I50N	probably damaging	Het
Esyt3	T	C	9: 99,324,237	M40V	probably benign	Het
Gkn3	C	T	6: 87,383,525	A163T	probably damaging	Het
Gpr26	G	T	7: 131,967,076	C50F	probably benign	Het
Hmcn1	A	G	1: 150,703,216	I1993T	possibly damaging	Het
Hsdl2	T	A	4: 59,610,636	L211Q	unknown	Het
Khdrbs2	A	G	1: 32,333,524	E93G	probably damaging	Het
Kif13b	T	C	14: 64,767,455		probably null	Het
Kif15	T	A	9: 122,986,189	L423I	probably benign	Het
Kmt2c	A	G	5: 25,287,713	V834A	probably benign	Het
Lama3	T	A	18: 12,504,308	Y28*	probably null	Het
Map4k2	A	T	19: 6,353,156	H763L	probably damaging	Het
Mkl2	T	C	16: 13,384,200	F120S	probably damaging	Het
Ndufs3	C	T	2: 90,898,345		probably benign	Het
Nfasc	A	T	1: 132,595,591	V887E	probably damaging	Het
Npsr1	G	A	9: 24,313,769	E358K	possibly damaging	Het
Nrcam	T	C	12: 44,572,202	L828P	possibly damaging	Het
Olfr344	T	A	2: 36,569,018	L140H	probably damaging	Het
Oprm1	T	C	10: 6,830,234	Y299H	probably damaging	Het
Osbpl8	T	C	10: 111,289,790	V777A	possibly damaging	Het
Pcnt	T	C	10: 76,428,014	E372G	probably damaging	Het
Plekhh2	T	C	17: 84,617,999	V1408A	probably benign	Het
Sbk2	T	C	7: 4,957,628	Y181C	probably damaging	Het
Sf1	G	A	19: 6,368,440		probably null	Het
Slc26a9	A	G	1: 131,767,849	E765G	possibly damaging	Het
Stab2	A	G	10: 86,922,185	L1073P	probably damaging	Het
Taar3	A	G	10: 23,949,859	D101G	possibly damaging	Het
Thsd4	T	C	9: 59,997,222	R204G	probably benign	Het
Traf3ip3	A	G	1: 193,181,320	V414A	probably damaging	Het
Trim14	T	A	4: 46,523,709	T110S	probably benign	Het
Trim65	G	A	11: 116,126,479	Q386*	probably null	Het
Ttn	G	A	2: 76,917,770	Q4312*	probably null	Het
Ubtfl1	T	C	9: 18,409,968	V264A	probably damaging	Het
Vmn1r58	C	A	7: 5,410,655	W192L	probably damaging	Het
Washc5	C	A	15: 59,339,862	C969F	probably damaging	Het
Zdhhc14	A	G	17: 5,726,856	K296R	probably benign	Het
Zfp281	T	A	1: 136,626,121	I279N	probably damaging	Het
Zfp9	G	T	6: 118,464,769	P311T	probably damaging	Het

Other mutations in Sypl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00089:Sypl2	APN	3	108226426	start gained	probably benign
R0147:Sypl2	UTSW	3	108219095	missense	possibly damaging	0.91
R0148:Sypl2	UTSW	3	108219095	missense	possibly damaging	0.91
R0381:Sypl2	UTSW	3	108226157	missense	possibly damaging	0.57
R0512:Sypl2	UTSW	3	108226170	missense	possibly damaging	0.51
R0751:Sypl2	UTSW	3	108216756	missense	probably damaging	0.98
R1279:Sypl2	UTSW	3	108217674	missense	probably damaging	1.00
R3411:Sypl2	UTSW	3	108216729	missense	possibly damaging	0.94
R4085:Sypl2	UTSW	3	108217676	missense	possibly damaging	0.94
R4086:Sypl2	UTSW	3	108217676	missense	possibly damaging	0.94
R4089:Sypl2	UTSW	3	108217676	missense	possibly damaging	0.94
R4090:Sypl2	UTSW	3	108217676	missense	possibly damaging	0.94
R7063:Sypl2	UTSW	3	108217655	missense	probably benign	0.31
R7571:Sypl2	UTSW	3	108214538	makesense	probably null
R7980:Sypl2	UTSW	3	108217692	missense	probably damaging	1.00
R8364:Sypl2	UTSW	3	108217734	missense	possibly damaging	0.62

Predicted Primers

PCR Primer
(F):5'- CACATAGGCATCAGGACTCAGG -3'
(R):5'- CTACATGACTCCTTTCCCAGGG -3'

Sequencing Primer
(F):5'- GGGAAACTATTACTTTTGATCGCCC -3'
(R):5'- ACTCCTTTCCCAGGGTGAGC -3'

Posted On

2015-05-15