Mutagenetix > Incidental Mutation

Incidental Mutation 'R4092:Raver1'

317673

Institutional Source

Beutler Lab

Gene Symbol

Raver1

Ensembl Gene

ENSMUSG00000010205

Gene Name

ribonucleoprotein, PTB-binding 1

Synonyms

1300006N24Rik

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.430) question?

Stock #

R4092 (G1)

Quality Score

224

Status

Validated

Chromosome

Chromosomal Location

20985454-21003295 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 20992568 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Glutamine at position 287 (L287Q)

Ref Sequence

ENSEMBL: ENSMUSP00000151195 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000115487] [ENSMUST00000217359]

AlphaFold

Q9CW46

Predicted Effect

probably damaging
Transcript: ENSMUST00000115487
AA Change: L287Q

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000111150
Gene: ENSMUSG00000010205
AA Change: L287Q

Domain	Start	End	E-Value	Type
low complexity region	15	26	N/A	INTRINSIC
low complexity region	32	43	N/A	INTRINSIC
RRM	60	126	1.53e-10	SMART
RRM	133	206	5.66e-14	SMART
RRM	222	295	1.15e-5	SMART
low complexity region	307	318	N/A	INTRINSIC
low complexity region	324	339	N/A	INTRINSIC
low complexity region	343	351	N/A	INTRINSIC
low complexity region	360	396	N/A	INTRINSIC
low complexity region	419	454	N/A	INTRINSIC
low complexity region	460	474	N/A	INTRINSIC
low complexity region	511	527	N/A	INTRINSIC
low complexity region	533	543	N/A	INTRINSIC
low complexity region	547	565	N/A	INTRINSIC
low complexity region	637	643	N/A	INTRINSIC
low complexity region	675	699	N/A	INTRINSIC
low complexity region	713	722	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000217282
AA Change: L27Q

Predicted Effect

probably damaging
Transcript: ENSMUST00000217359
AA Change: L287Q

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)

Meta Mutation Damage Score

0.2707

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.6%
20x: 96.0%

Validation Efficiency

100% (53/53)

MGI Phenotype

PHENOTYPE: Mice homozygous for a null allele exhibit reduced long term potentiation and depression. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 49 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2010315B03Rik	A	T	9: 124,055,903 (GRCm39)	H340Q	probably benign	Het
Adam22	A	T	5: 8,145,004 (GRCm39)	I116N	probably damaging	Het
Adamts2	T	A	11: 50,678,103 (GRCm39)	V794E	probably damaging	Het
Ak9	T	C	10: 41,265,140 (GRCm39)	S966P	probably benign	Het
Alox5	G	A	6: 116,389,635 (GRCm39)		probably benign	Het
Bmerb1	G	A	16: 13,867,346 (GRCm39)	R68H	probably damaging	Het
Brip1	C	T	11: 86,039,347 (GRCm39)	D396N	possibly damaging	Het
Catsper3	C	T	13: 55,932,484 (GRCm39)	H4Y	probably benign	Het
Cmtm2a	T	C	8: 105,019,403 (GRCm39)	Y62C	probably benign	Het
Crim1	T	C	17: 78,658,265 (GRCm39)	C715R	probably damaging	Het
Dio3	A	G	12: 110,246,234 (GRCm39)	D190G	possibly damaging	Het
Efl1	A	G	7: 82,412,035 (GRCm39)	E808G	probably benign	Het
Eif1ad16	A	T	12: 87,985,194 (GRCm39)	N116K	possibly damaging	Het
Fam83b	T	C	9: 76,398,943 (GRCm39)	D720G	probably benign	Het
Fbp2	C	T	13: 62,988,174 (GRCm39)	V246M	possibly damaging	Het
Gm10197	G	A	19: 53,360,196 (GRCm39)		probably benign	Het
Icam2	C	A	11: 106,271,623 (GRCm39)	M1I	probably null	Het
Insyn2b	G	A	11: 34,351,935 (GRCm39)		probably benign	Het
Kit	T	C	5: 75,771,470 (GRCm39)	I209T	probably benign	Het
Lcmt1	T	C	7: 123,017,476 (GRCm39)	V200A	probably damaging	Het
Lrrn2	C	T	1: 132,865,390 (GRCm39)	Q152*	probably null	Het
Mmadhc	A	G	2: 50,177,895 (GRCm39)	M174T	probably benign	Het
N4bp2	A	G	5: 65,947,799 (GRCm39)	N143S	probably benign	Het
Ndufs1	G	A	1: 63,196,405 (GRCm39)	A340V	possibly damaging	Het
Nid1	A	G	13: 13,661,224 (GRCm39)	D708G	probably damaging	Het
Noc2l	A	C	4: 156,327,033 (GRCm39)	T295P	probably damaging	Het
Nutm1	T	A	2: 112,079,809 (GRCm39)	N702I	probably damaging	Het
Obscn	T	A	11: 58,946,886 (GRCm39)	M4083L	probably benign	Het
Or5b104	T	C	19: 13,072,790 (GRCm39)	Y74C	probably damaging	Het
Otol1	T	A	3: 69,935,118 (GRCm39)	I370N	probably damaging	Het
Paip1	T	G	13: 119,586,449 (GRCm39)	S58A	probably benign	Het
Pfas	T	C	11: 68,884,775 (GRCm39)	T476A	probably benign	Het
Plppr3	G	T	10: 79,703,314 (GRCm39)	R57S	probably damaging	Het
Ptgir	T	C	7: 16,640,932 (GRCm39)	S75P	probably damaging	Het
Rps6ka4	C	T	19: 6,809,623 (GRCm39)		probably null	Het
Rps6-ps2	A	G	8: 89,533,319 (GRCm39)		noncoding transcript	Het
Scn11a	T	A	9: 119,619,036 (GRCm39)	M769L	probably benign	Het
Serpina16	G	T	12: 103,638,836 (GRCm39)	H250Q	probably benign	Het
Serpina3a	G	A	12: 104,082,625 (GRCm39)	V133I	probably benign	Het
Slc12a8	G	A	16: 33,437,491 (GRCm39)	G308D	probably damaging	Het
Slfn5	T	C	11: 82,851,893 (GRCm39)	L673P	probably damaging	Het
Sorcs2	T	C	5: 36,183,166 (GRCm39)	K1036E	possibly damaging	Het
Speer3	C	G	5: 13,846,394 (GRCm39)	A238G	possibly damaging	Het
Sptbn5	C	A	2: 119,897,532 (GRCm39)	E550D	probably damaging	Het
Srgap3	G	T	6: 112,700,045 (GRCm39)	P1002T	probably benign	Het
Tollip	C	T	7: 141,438,180 (GRCm39)	R181H	probably damaging	Het
Trmt1l	T	A	1: 151,330,784 (GRCm39)	S600R	probably benign	Het
Vps16	T	A	2: 130,281,832 (GRCm39)	Y315N	probably damaging	Het
Vps50	A	G	6: 3,551,037 (GRCm39)	E367G	probably benign	Het

Other mutations in Raver1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01923:Raver1	APN	9	20,990,536 (GRCm39)	missense	probably damaging	1.00
IGL02863:Raver1	APN	9	20,987,267 (GRCm39)	missense	probably damaging	0.98
IGL03128:Raver1	APN	9	20,992,038 (GRCm39)	missense	probably damaging	1.00
R0265:Raver1	UTSW	9	20,986,955 (GRCm39)	missense	probably benign	0.43
R1017:Raver1	UTSW	9	20,990,886 (GRCm39)	splice site	probably benign
R3177:Raver1	UTSW	9	20,990,573 (GRCm39)	missense	possibly damaging	0.90
R3277:Raver1	UTSW	9	20,990,573 (GRCm39)	missense	possibly damaging	0.90
R4463:Raver1	UTSW	9	21,003,123 (GRCm39)	missense	probably benign	0.01
R5302:Raver1	UTSW	9	20,986,677 (GRCm39)	missense	probably damaging	1.00
R5652:Raver1	UTSW	9	21,001,608 (GRCm39)	missense	probably damaging	0.98
R6021:Raver1	UTSW	9	20,987,918 (GRCm39)	missense	probably damaging	1.00
R7065:Raver1	UTSW	9	21,001,590 (GRCm39)	missense	probably benign	0.00
R7833:Raver1	UTSW	9	20,992,610 (GRCm39)	missense	probably benign	0.11
R8480:Raver1	UTSW	9	21,001,576 (GRCm39)	missense	probably benign	0.29
R9662:Raver1	UTSW	9	20,992,550 (GRCm39)	missense	probably benign	0.40

Predicted Primers

PCR Primer
(F):5'- GAAGATTTGGCTCAGGCAGG -3'
(R):5'- CTCTGCAAGGGCTCATTGTC -3'

Sequencing Primer
(F):5'- GAGTCCCTTGCCTCGATTAAGAG -3'
(R):5'- CAAGGGCTCATTGTCAGTGTTG -3'

Posted On

2015-05-15