Mutagenetix > Incidental Mutation

Incidental Mutation 'R4094:Nccrp1'

317797

Institutional Source

Beutler Lab

Gene Symbol

Nccrp1

Ensembl Gene

ENSMUSG00000047586

Gene Name

non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)

Synonyms

LOC233038, 1190020J12Rik

MMRRC Submission

041628-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.105) question?

Stock #

R4094 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

28243021-28246679 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 28243651 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 261 (Y261C)

Ref Sequence

ENSEMBL: ENSMUSP00000055562 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000040531] [ENSMUST00000057974] [ENSMUST00000119180]

AlphaFold

G3X9C2

Predicted Effect

probably benign
Transcript: ENSMUST00000040531

SMART Domains

Protein: ENSMUSP00000040486
Gene: ENSMUSG00000109336

Domain	Start	End	E-Value	Type
low complexity region	81	90	N/A	INTRINSIC
low complexity region	174	190	N/A	INTRINSIC
low complexity region	200	211	N/A	INTRINSIC
low complexity region	278	290	N/A	INTRINSIC
SAM	296	359	1.02e-9	SMART
low complexity region	406	420	N/A	INTRINSIC
low complexity region	433	461	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000057974
AA Change: Y261C

PolyPhen 2 Score 0.836 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000055562
Gene: ENSMUSG00000047586
AA Change: Y261C

Domain	Start	End	E-Value	Type
low complexity region	51	72	N/A	INTRINSIC
FBA	108	289	1.07e-57	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000119180

SMART Domains

Protein: ENSMUSP00000112770
Gene: ENSMUSG00000084174

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:Syncollin	22	133	9.9e-61	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.5%
20x: 95.8%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca6	A	G	11: 110,071,192 (GRCm39)	C1500R	probably damaging	Het
Amz1	A	T	5: 140,737,921 (GRCm39)	M93L	probably damaging	Het
Asb18	A	T	1: 89,942,147 (GRCm39)	N51K	probably damaging	Het
Bcl11b	G	T	12: 107,883,094 (GRCm39)	P335Q	probably damaging	Het
Bsn	A	C	9: 107,991,069 (GRCm39)	V1561G	probably damaging	Het
Cadm2	A	T	16: 66,679,685 (GRCm39)	N49K	probably damaging	Het
Cct8	T	G	16: 87,284,516 (GRCm39)	I283L	possibly damaging	Het
Cdc25b	A	G	2: 131,031,037 (GRCm39)	M121V	probably benign	Het
Cpne4	A	G	9: 104,563,734 (GRCm39)	D37G	probably damaging	Het
Cym	A	G	3: 107,121,582 (GRCm39)	S237P	probably benign	Het
Dhx35	T	A	2: 158,684,276 (GRCm39)	I517N	probably damaging	Het
Ehf	T	C	2: 103,121,095 (GRCm39)		probably benign	Het
Erp29	A	G	5: 121,590,345 (GRCm39)		probably benign	Het
Fgd6	C	A	10: 93,879,296 (GRCm39)	P50Q	probably damaging	Het
Fhip1b	T	C	7: 105,037,425 (GRCm39)	D386G	probably damaging	Het
Foxn3	G	T	12: 99,162,700 (GRCm39)	D400E	probably damaging	Het
Frmd4a	A	G	2: 4,615,843 (GRCm39)	Y1031C	probably damaging	Het
Gna13	T	A	11: 109,287,242 (GRCm39)	I355N	probably damaging	Het
Hgs	T	A	11: 120,359,859 (GRCm39)	L21*	probably null	Het
Htr2a	G	A	14: 74,943,789 (GRCm39)	M456I	probably benign	Het
Itga2	T	C	13: 115,007,161 (GRCm39)	D389G	probably benign	Het
Kdm1b	T	C	13: 47,216,496 (GRCm39)	C289R	probably damaging	Het
Kdm4c	T	A	4: 74,229,915 (GRCm39)	D237E	probably benign	Het
Lilrb4b	A	T	10: 51,357,506 (GRCm39)	E114V	probably damaging	Het
Loxl1	G	A	9: 58,219,739 (GRCm39)	T144I	probably damaging	Het
Macf1	C	T	4: 123,353,062 (GRCm39)	R1784Q	probably benign	Het
Maml2	G	A	9: 13,531,449 (GRCm39)	S221N	probably benign	Het
Map3k1	A	G	13: 111,892,696 (GRCm39)	M853T	possibly damaging	Het
Micu3	T	G	8: 40,788,929 (GRCm39)	S147A	probably null	Het
Or51aa5	T	A	7: 103,167,244 (GRCm39)	I116F	possibly damaging	Het
Or5m5	A	G	2: 85,814,562 (GRCm39)	Y126C	probably damaging	Het
Or8k18	T	C	2: 86,085,674 (GRCm39)	D121G	probably damaging	Het
Or8s10	T	C	15: 98,335,563 (GRCm39)	L71P	probably damaging	Het
Pclo	C	A	5: 14,905,659 (GRCm39)	T4963N	unknown	Het
Pdxk	T	C	10: 78,300,644 (GRCm39)	H13R	probably damaging	Het
Plcg1	A	G	2: 160,589,761 (GRCm39)	E95G	probably damaging	Het
Ppargc1a	T	C	5: 51,647,406 (GRCm39)	N276S	possibly damaging	Het
Prr12	A	G	7: 44,697,371 (GRCm39)	L848P	unknown	Het
Ptcd2	A	G	13: 99,468,957 (GRCm39)	I202T	probably damaging	Het
Rab27a	A	C	9: 72,982,826 (GRCm39)	I44L	probably damaging	Het
Rbfox2	A	T	15: 77,016,925 (GRCm39)	S82T	probably damaging	Het
Rsbn1	T	A	3: 103,835,974 (GRCm39)	F337L	probably damaging	Het
Samd8	T	C	14: 21,843,113 (GRCm39)	I414T	probably damaging	Het
Sema3e	A	G	5: 14,283,704 (GRCm39)	I478V	probably benign	Het
Sfswap	A	G	5: 129,637,805 (GRCm39)	S821G	possibly damaging	Het
Slc2a3	A	T	6: 122,712,527 (GRCm39)	I239N	probably benign	Het
Spc25	G	A	2: 69,032,975 (GRCm39)	S50L	probably damaging	Het
St8sia4	A	T	1: 95,555,411 (GRCm39)	S206R	possibly damaging	Het
Syngr3	G	A	17: 24,908,817 (GRCm39)		probably benign	Het
Tigd4	A	G	3: 84,501,947 (GRCm39)	D288G	probably damaging	Het
Trim34b	A	G	7: 103,983,795 (GRCm39)	M251V	probably benign	Het
Ttll5	A	T	12: 86,003,376 (GRCm39)	R214*	probably null	Het
Ttn	T	C	2: 76,730,860 (GRCm39)		probably benign	Het
Vmp1	A	G	11: 86,534,406 (GRCm39)	I167T	probably benign	Het
Zfp64	T	C	2: 168,767,855 (GRCm39)	T586A	probably benign	Het
Zfp943	T	A	17: 22,211,963 (GRCm39)	C350S	probably damaging	Het
Zscan4f	A	T	7: 11,135,185 (GRCm39)	N197I	probably damaging	Het

Other mutations in Nccrp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01837:Nccrp1	APN	7	28,246,191 (GRCm39)	missense	probably damaging	0.99
IGL02568:Nccrp1	APN	7	28,243,905 (GRCm39)	missense	probably damaging	1.00
R0105:Nccrp1	UTSW	7	28,246,463 (GRCm39)	missense	probably benign	0.22
R0365:Nccrp1	UTSW	7	28,243,977 (GRCm39)	missense	probably damaging	0.99
R2114:Nccrp1	UTSW	7	28,246,334 (GRCm39)	missense	probably benign	0.15
R4660:Nccrp1	UTSW	7	28,245,760 (GRCm39)	missense	probably damaging	1.00
R8712:Nccrp1	UTSW	7	28,245,769 (GRCm39)	missense	probably benign	0.39
R8955:Nccrp1	UTSW	7	28,245,628 (GRCm39)	missense	probably benign	0.21
R9258:Nccrp1	UTSW	7	28,245,632 (GRCm39)	missense	probably damaging	1.00
Z1186:Nccrp1	UTSW	7	28,246,461 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- AGACTGTTGCTAAGCACACAC -3'
(R):5'- GATAAATGCGCTGCCAGGTC -3'

Sequencing Primer
(F):5'- TGTTGCTAAGCACACACACAAAAGG -3'
(R):5'- CCCTGGTGAGACTTTCTTC -3'

Posted On

2015-05-15