Mutagenetix > Incidental Mutation

Incidental Mutation 'R1961:Nr2f2'

317932

Institutional Source

Beutler Lab

Gene Symbol

Nr2f2

Ensembl Gene

ENSMUSG00000030551

Gene Name

nuclear receptor subfamily 2, group F, member 2

Synonyms

Tcfcoup2, COUP-TFII, COUP-TF2, ARP-1, EAR3, 9430015G03Rik, Aporp1

MMRRC Submission

039975-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1961 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

70351944-70366735 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 70358155 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Lysine at position 193 (T193K)

Ref Sequence

ENSEMBL: ENSMUSP00000032768 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032768] [ENSMUST00000089565] [ENSMUST00000208081]

AlphaFold

P43135

Predicted Effect

possibly damaging
Transcript: ENSMUST00000032768
AA Change: T193K

PolyPhen 2 Score 0.798 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000032768
Gene: ENSMUSG00000030551
AA Change: T193K

Domain	Start	End	E-Value	Type
low complexity region	21	75	N/A	INTRINSIC
ZnF_C4	76	147	4.57e-39	SMART
HOLI	214	374	1.29e-47	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000089565
AA Change: T60K

PolyPhen 2 Score 0.347 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000086993
Gene: ENSMUSG00000030551
AA Change: T60K

Domain	Start	End	E-Value	Type
HOLI	81	241	5.2e-50	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000207153

Predicted Effect

probably benign
Transcript: ENSMUST00000208081
AA Change: T40K

PolyPhen 2 Score 0.210 (Sensitivity: 0.92; Specificity: 0.88)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000208474

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000208681

Meta Mutation Damage Score

0.2980

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 94.4%

Validation Efficiency

99% (93/94)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the steroid thyroid hormone superfamily of nuclear receptors. The encoded protein is a ligand inducible transcription factor that is involved in the regulation of many different genes. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Mar 2010]
PHENOTYPE: Homozygotes for a targeted null mutation exhibit impaired angiogenesis and heart development with hemorrhagic brains and hearts, and die around embryonic day 10. About 5% of heterozygotes share the hemorrhagic phenotype at embryonic day 9.5. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 92 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc1	T	C	16: 14,396,393 (GRCm38)	Y191H	probably damaging	Het
Abcc4	C	A	14: 118,611,456 (GRCm38)	G495C	probably damaging	Het
Abcc4	C	A	14: 118,611,459 (GRCm38)	V494L	possibly damaging	Het
Acsm4	T	C	7: 119,708,740 (GRCm38)	Y367H	probably benign	Het
Adam21	A	T	12: 81,559,508 (GRCm38)	Y493*	probably null	Het
Add2	T	C	6: 86,096,756 (GRCm38)	F209S	probably damaging	Het
Adgre4	T	C	17: 55,791,497 (GRCm38)	S136P	probably benign	Het
Aff4	T	G	11: 53,372,999 (GRCm38)	L282R	probably damaging	Het
Akt3	A	G	1: 177,096,995 (GRCm38)	I178T	probably damaging	Het
Ap3m1	T	C	14: 21,041,015 (GRCm38)	Y174C	probably damaging	Het
Arb2a	C	A	13: 77,902,720 (GRCm38)	H50N	probably benign	Het
Atl1	A	G	12: 69,953,500 (GRCm38)	E308G	probably benign	Het
Atp8b5	T	G	4: 43,369,688 (GRCm38)	V942G	probably damaging	Het
B3gntl1	A	G	11: 121,644,525 (GRCm38)		probably null	Het
Btrc	T	G	19: 45,527,343 (GRCm38)	I480S	probably damaging	Het
Cacna1c	A	T	6: 118,630,322 (GRCm38)	I1366N	probably benign	Het
Ccdc113	T	A	8: 95,540,831 (GRCm38)	N141K	probably benign	Het
Ccdc167	T	C	17: 29,704,431 (GRCm38)	N77D	possibly damaging	Het
Ccser1	T	C	6: 61,313,646 (GRCm38)		probably benign	Het
Cenpe	A	G	3: 135,242,493 (GRCm38)	E1230G	probably damaging	Het
Clec12a	A	C	6: 129,350,481 (GRCm38)	T21P	possibly damaging	Het
Cyp26c1	T	A	19: 37,687,377 (GRCm38)	F230I	probably damaging	Het
Exog	A	G	9: 119,452,266 (GRCm38)	E190G	possibly damaging	Het
Fam162b	A	G	10: 51,590,334 (GRCm38)	W30R	probably benign	Het
Fndc3b	G	A	3: 27,456,451 (GRCm38)	Q841*	probably null	Het
Frzb	T	A	2: 80,424,601 (GRCm38)	Y197F	probably benign	Het
G530012D18Rik	CAGAGAGA	CAGAGAGAGA	1: 85,577,224 (GRCm38)		probably null	Het
Gabrb1	G	A	5: 71,700,336 (GRCm38)	R43Q	probably benign	Het
Gm21060	A	T	19: 61,297,007 (GRCm38)	H21Q	possibly damaging	Het
Gm4825	A	G	15: 85,511,044 (GRCm38)		noncoding transcript	Het
Gm5581	A	C	6: 131,168,162 (GRCm38)		noncoding transcript	Het
Gm9894	T	C	13: 67,763,915 (GRCm38)		noncoding transcript	Het
Gpr15	T	A	16: 58,718,007 (GRCm38)	I240L	probably benign	Het
Gria4	A	T	9: 4,519,546 (GRCm38)		probably benign	Het
Grid2	T	C	6: 63,908,893 (GRCm38)	L91S	probably damaging	Het
Igsf5	A	C	16: 96,378,351 (GRCm38)	T215P	probably damaging	Het
Kif13a	G	A	13: 46,864,838 (GRCm38)		probably benign	Het
Kif21a	G	A	15: 90,970,848 (GRCm38)	A703V	probably damaging	Het
Kif27	T	G	13: 58,293,123 (GRCm38)	R1159S	probably benign	Het
Kifc2	T	A	15: 76,662,825 (GRCm38)	L226H	probably damaging	Het
Klf10	T	C	15: 38,295,996 (GRCm38)	H435R	probably damaging	Het
Masp1	T	C	16: 23,452,932 (GRCm38)	Y623C	probably damaging	Het
Megf10	T	A	18: 57,212,354 (GRCm38)	C118S	probably damaging	Het
Mical3	A	G	6: 120,982,607 (GRCm38)	V909A	possibly damaging	Het
Mmrn2	A	G	14: 34,398,475 (GRCm38)		probably null	Het
Mpeg1	G	A	19: 12,462,911 (GRCm38)	V578M	probably damaging	Het
Nlrp2	T	C	7: 5,327,738 (GRCm38)	E553G	probably damaging	Het
Nmi	A	T	2: 51,948,620 (GRCm38)	S301T	probably benign	Het
Ntng2	T	C	2: 29,197,098 (GRCm38)	N404S	probably damaging	Het
Nup50l	A	G	6: 96,165,269 (GRCm38)	S265P	possibly damaging	Het
Oplah	G	A	15: 76,297,464 (GRCm38)	T1119I	probably damaging	Het
Or1x2	T	G	11: 51,027,475 (GRCm38)	S158A	probably benign	Het
Or52e3	T	C	7: 103,219,997 (GRCm38)	V93A	probably benign	Het
Otoa	T	A	7: 121,118,569 (GRCm38)	D336E	probably benign	Het
Pde4b	A	G	4: 102,597,460 (GRCm38)	E108G	probably damaging	Het
Pdgfrb	G	A	18: 61,061,505 (GRCm38)	R118H	possibly damaging	Het
Phactr4	G	A	4: 132,377,248 (GRCm38)	T256I	probably benign	Het
Pla2g3	C	T	11: 3,490,983 (GRCm38)	T316I	probably benign	Het
Plekhg4	A	G	8: 105,381,464 (GRCm38)	E982G	probably damaging	Het
Pmfbp1	T	G	8: 109,530,144 (GRCm38)		probably benign	Het
Pot1b	A	T	17: 55,662,531 (GRCm38)	Y546N	probably damaging	Het
Pphln1-ps1	T	A	16: 13,677,728 (GRCm38)	H230Q	probably benign	Het
Rab11fip5	C	A	6: 85,348,991 (GRCm38)	Q144H	possibly damaging	Het
Reep3	A	T	10: 67,039,499 (GRCm38)		probably null	Het
Rgl2	T	C	17: 33,933,615 (GRCm38)	L400P	probably damaging	Het
Rnf122	A	G	8: 31,124,846 (GRCm38)		probably benign	Het
Scgb1b21	G	T	7: 33,527,378 (GRCm38)		noncoding transcript	Het
Sec63	A	T	10: 42,823,886 (GRCm38)	K647N	probably damaging	Het
Sema4a	C	T	3: 88,438,176 (GRCm38)		probably benign	Het
Serpinf1	C	T	11: 75,416,419 (GRCm38)	V31I	probably benign	Het
Sez6l	C	T	5: 112,424,615 (GRCm38)		probably benign	Het
Shank3	T	C	15: 89,557,964 (GRCm38)	S1612P	possibly damaging	Het
Slc19a3	G	A	1: 83,022,798 (GRCm38)	T166M	probably benign	Het
Slc22a29	C	A	19: 8,169,193 (GRCm38)	R415M	probably benign	Het
Slc38a11	A	T	2: 65,330,339 (GRCm38)	F304I	possibly damaging	Het
Slitrk1	T	A	14: 108,912,190 (GRCm38)	N363I	probably damaging	Het
Slx4ip	A	G	2: 137,067,681 (GRCm38)	T129A	probably benign	Het
Spop	T	C	11: 95,491,711 (GRCm38)	V332A	possibly damaging	Het
Sptlc1	A	C	13: 53,358,880 (GRCm38)	D147E	probably benign	Het
Tnpo1	T	C	13: 98,852,932 (GRCm38)	Y754C	probably damaging	Het
Tox	C	A	4: 6,688,886 (GRCm38)	V493L	probably damaging	Het
Ttbk1	A	C	17: 46,480,224 (GRCm38)	F45V	probably damaging	Het
Ttc27	T	A	17: 74,780,856 (GRCm38)	M472K	probably damaging	Het
Ttll7	A	G	3: 146,915,795 (GRCm38)		probably benign	Het
Ttn	T	A	2: 76,798,212 (GRCm38)	M14535L	possibly damaging	Het
Ttn	A	T	2: 76,721,760 (GRCm38)	C22851S	probably benign	Het
Txlna	T	C	4: 129,640,262 (GRCm38)	T54A	probably benign	Het
Usp33	T	C	3: 152,380,628 (GRCm38)	V668A	probably damaging	Het
Vmn2r28	C	A	7: 5,481,071 (GRCm38)	C710F	possibly damaging	Het
Vmn2r8	T	A	5: 108,798,095 (GRCm38)	M549L	probably benign	Het
Vwa5b2	T	C	16: 20,602,191 (GRCm38)		probably null	Het
Wnk1	T	C	6: 119,969,247 (GRCm38)	I648M	probably damaging	Het

Other mutations in Nr2f2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00672:Nr2f2	APN	7	70,357,766 (GRCm38)	missense	possibly damaging	0.88
IGL01736:Nr2f2	APN	7	70,354,698 (GRCm38)	missense	probably damaging	1.00
IGL02667:Nr2f2	APN	7	70,357,985 (GRCm38)	missense	probably damaging	1.00
R0149:Nr2f2	UTSW	7	70,358,062 (GRCm38)	missense	possibly damaging	0.90
R0206:Nr2f2	UTSW	7	70,360,175 (GRCm38)	missense	probably damaging	0.98
R0207:Nr2f2	UTSW	7	70,360,175 (GRCm38)	missense	probably damaging	0.98
R0240:Nr2f2	UTSW	7	70,360,175 (GRCm38)	missense	probably damaging	0.98
R0243:Nr2f2	UTSW	7	70,360,175 (GRCm38)	missense	probably damaging	0.98
R0361:Nr2f2	UTSW	7	70,358,062 (GRCm38)	missense	possibly damaging	0.90
R0540:Nr2f2	UTSW	7	70,354,712 (GRCm38)	missense	probably damaging	1.00
R0607:Nr2f2	UTSW	7	70,354,712 (GRCm38)	missense	probably damaging	1.00
R0741:Nr2f2	UTSW	7	70,357,997 (GRCm38)	missense	probably damaging	1.00
R1894:Nr2f2	UTSW	7	70,354,671 (GRCm38)	missense	probably benign	0.00
R3033:Nr2f2	UTSW	7	70,358,062 (GRCm38)	missense	possibly damaging	0.90
R3754:Nr2f2	UTSW	7	70,358,021 (GRCm38)	missense	probably benign	0.01
R4517:Nr2f2	UTSW	7	70,358,122 (GRCm38)	missense	probably benign	0.21
R6175:Nr2f2	UTSW	7	70,358,198 (GRCm38)	missense	probably damaging	1.00
R6226:Nr2f2	UTSW	7	70,359,996 (GRCm38)	missense	probably benign	0.00
R7544:Nr2f2	UTSW	7	70,354,751 (GRCm38)	missense	probably damaging	1.00
R7796:Nr2f2	UTSW	7	70,358,153 (GRCm38)	missense	probably benign	0.03
R7894:Nr2f2	UTSW	7	70,359,933 (GRCm38)	missense	probably damaging	1.00
R9377:Nr2f2	UTSW	7	70,358,108 (GRCm38)	missense	probably damaging	1.00
R9411:Nr2f2	UTSW	7	70,357,777 (GRCm38)	missense
R9513:Nr2f2	UTSW	7	70,360,308 (GRCm38)	missense	probably damaging	0.98
Z1176:Nr2f2	UTSW	7	70,357,778 (GRCm38)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GTGGTCCATAAAAGCGACCAC -3'
(R):5'- CCAAGGCTGATCATTAACTGTGG -3'

Sequencing Primer
(F):5'- TGGGCCGCATTCAACAC -3'
(R):5'- CTGATCATTAACTGTGGAGTGTCTC -3'

Posted On

2015-05-19