Mutagenetix > Incidental Mutation

Incidental Mutation 'R1960:Doxl2'

318026

Institutional Source

Beutler Lab

Gene Symbol

Doxl2

Ensembl Gene

ENSMUSG00000068536

Gene Name

diamine oxidase-like protein 2

Synonyms

MMRRC Submission

039974-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1960 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

48974963-48978746 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 48975753 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Isoleucine at position 204 (T204I)

Ref Sequence

ENSEMBL: ENSMUSP00000087517 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000090063] [ENSMUST00000184917]

AlphaFold

Q6IMK7

Predicted Effect

probably damaging
Transcript: ENSMUST00000090063
AA Change: T204I

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000087517
Gene: ENSMUSG00000068536
AA Change: T204I

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
Pfam:Cu_amine_oxidN2	44	130	1.8e-26	PFAM
Pfam:Cu_amine_oxidN3	146	246	2.5e-16	PFAM
Pfam:Cu_amine_oxid	298	708	1.3e-91	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000184852

SMART Domains

Protein: ENSMUSP00000139236
Gene: ENSMUSG00000068536

Domain	Start	End	E-Value	Type
Pfam:Cu_amine_oxid	15	212	2.4e-39	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000184917
AA Change: T204I

PolyPhen 2 Score 0.490 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000139012
Gene: ENSMUSG00000068536
AA Change: T204I

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
Pfam:Cu_amine_oxidN2	44	130	1.1e-21	PFAM
Pfam:Cu_amine_oxidN3	146	246	3.1e-14	PFAM
Pfam:Cu_amine_oxid	298	711	1.4e-96	PFAM

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 94.9%

Validation Efficiency

100% (95/95)

Allele List at MGI

Other mutations in this stock

Total: 92 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2410004B18Rik	C	T	3: 145,938,221	P55S	probably damaging	Het
Adgre4	T	C	17: 55,791,497	S136P	probably benign	Het
Als2cr12	A	T	1: 58,659,278	V327D	possibly damaging	Het
Arap1	C	A	7: 101,373,015	A8E	probably damaging	Het
Arid1a	A	T	4: 133,753,090	H174Q	possibly damaging	Het
Btbd2	A	G	10: 80,644,705	I358T	probably benign	Het
Camkk2	G	A	5: 122,737,512	R492*	probably null	Het
Capn3	T	C	2: 120,463,940	V23A	probably benign	Het
Carm1	T	G	9: 21,580,310	V225G	probably benign	Het
Ccdc113	T	A	8: 95,540,831	N141K	probably benign	Het
Ccdc60	C	A	5: 116,146,184	M298I	probably benign	Het
Celsr3	C	T	9: 108,845,817	P2801L	probably benign	Het
Clec4n	T	A	6: 123,230,546	V23E	probably damaging	Het
Cmtr2	T	G	8: 110,221,750	L231V	probably damaging	Het
Csrnp3	T	G	2: 66,023,019	V585G	probably null	Het
Ctnnd2	T	C	15: 30,647,111	S318P	probably damaging	Het
Cubn	A	T	2: 13,340,017		probably null	Het
Dgkd	C	A	1: 87,929,827	P754T	possibly damaging	Het
Dnah7a	A	G	1: 53,684,983	S108P	probably benign	Het
Dnajc24	A	G	2: 106,001,923		probably benign	Het
Dner	A	T	1: 84,445,456	S475R	probably damaging	Het
Dtnb	T	C	12: 3,781,190	L630P	probably benign	Het
Dysf	T	C	6: 84,073,903	F411L	probably benign	Het
Fam208a	T	C	14: 27,438,664	S128P	probably damaging	Het
Fam208a	C	T	14: 27,479,789	H1419Y	possibly damaging	Het
Fbxo18	G	A	2: 11,757,528	A566V	probably damaging	Het
Fbxw19	G	T	9: 109,485,936	T186K	probably benign	Het
Gm4825	A	G	15: 85,511,044		noncoding transcript	Het
Grhl2	T	A	15: 37,336,314	V54D	probably damaging	Het
Hmcn1	T	C	1: 150,675,991	I2621V	probably benign	Het
Hmcn1	T	A	1: 150,677,376	E2521V	possibly damaging	Het
Kcng1	A	G	2: 168,262,984	V314A	probably benign	Het
Kif13a	G	A	13: 46,864,838		probably benign	Het
Kif21a	G	A	15: 90,970,848	A703V	probably damaging	Het
Kifc1	A	G	17: 33,884,587		probably null	Het
Klk13	T	A	7: 43,721,007	N31K	possibly damaging	Het
Klri1	T	A	6: 129,697,384	H221L	probably benign	Het
Ltbp4	G	A	7: 27,329,018	P273L	unknown	Het
Med16	T	C	10: 79,907,095	H14R	possibly damaging	Het
Mpeg1	G	A	19: 12,462,911	V578M	probably damaging	Het
Mrgpra2a	T	A	7: 47,427,235	I92F	probably benign	Het
Muc5b	T	C	7: 141,862,637	C3107R	possibly damaging	Het
Myo5a	T	A	9: 75,147,857	F441I	probably damaging	Het
Ndst4	T	A	3: 125,438,682	L300*	probably null	Het
Nlgn2	G	T	11: 69,827,310	D356E	probably damaging	Het
Nlrp2	T	C	7: 5,327,738	E553G	probably damaging	Het
Oas1f	G	A	5: 120,856,439	C341Y	possibly damaging	Het
Olfm5	A	T	7: 104,160,412	C111S	possibly damaging	Het
Olfr1176	T	C	2: 88,340,201	L212P	probably damaging	Het
Olfr523	A	T	7: 140,176,683	I188L	probably benign	Het
Olfr697	T	C	7: 106,741,394	E180G	probably damaging	Het
Olfr821	C	T	10: 130,034,318	Q231*	probably null	Het
Olfr876	A	G	9: 37,803,946	I12V	probably benign	Het
Olfr919	T	A	9: 38,698,204	H58L	probably benign	Het
Oplah	G	A	15: 76,297,464	T1119I	probably damaging	Het
Pde10a	T	C	17: 8,942,918	I477T	possibly damaging	Het
Pde4b	A	G	4: 102,597,460	E108G	probably damaging	Het
Pdgfrb	A	T	18: 61,065,783	T338S	probably benign	Het
Pgghg	A	G	7: 140,943,347	M180V	probably benign	Het
Phactr4	G	A	4: 132,377,248	T256I	probably benign	Het
Pot1b	A	T	17: 55,662,531	Y546N	probably damaging	Het
Rangap1	T	C	15: 81,706,503	T463A	probably benign	Het
Rap1gds1	T	C	3: 139,050,556	I13V	probably null	Het
Rbak	A	T	5: 143,174,682	Y205*	probably null	Het
Reg3b	A	T	6: 78,371,814	K31M	probably damaging	Het
Rfpl4	A	T	7: 5,115,534	Y12*	probably null	Het
Rnase6	A	G	14: 51,130,432	N94D	possibly damaging	Het
Rtn4	T	C	11: 29,736,464	L273P	probably damaging	Het
Ryr3	A	C	2: 112,794,467	F2203V	probably damaging	Het
Sae1	A	T	7: 16,368,565	D161E	possibly damaging	Het
Sema5a	T	C	15: 32,562,731	F296S	possibly damaging	Het
Sh3rf1	C	A	8: 61,384,863	P814Q	probably damaging	Het
Slc22a29	C	A	19: 8,169,193	R415M	probably benign	Het
Slc25a25	C	T	2: 32,420,651		probably null	Het
Slco4c1	T	A	1: 96,867,929	M135L	probably benign	Het
Slfn1	A	G	11: 83,121,753	I232V	possibly damaging	Het
Slitrk1	T	A	14: 108,912,190	N363I	probably damaging	Het
Srr	A	G	11: 74,908,716	V311A	probably damaging	Het
Tenm1	T	C	X: 42,827,201	D402G	probably benign	Het
Topors	T	C	4: 40,261,044	R747G	unknown	Het
Trank1	A	T	9: 111,391,628	I2478F	probably damaging	Het
Trim69	A	G	2: 122,167,684	N46D	probably benign	Het
Trpm1	T	A	7: 64,230,230	L661Q	probably damaging	Het
Ttbk1	A	C	17: 46,480,224	F45V	probably damaging	Het
Ttn	T	C	2: 76,814,305	K4708R	probably damaging	Het
Unkl	A	G	17: 25,209,645		probably benign	Het
Uros	A	T	7: 133,687,006	N257K	probably benign	Het
Usp25	A	G	16: 77,076,371	Y439C	probably damaging	Het
Vgf	A	G	5: 137,032,175		probably benign	Het
Vmn2r8	A	T	5: 108,799,286	D533E	probably damaging	Het
Vps13a	A	T	19: 16,725,631	Y653N	probably damaging	Het
Zfp358	T	C	8: 3,495,742	V135A	possibly damaging	Het

Other mutations in Doxl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00950:Doxl2	APN	6	48978131	missense	possibly damaging	0.82
IGL00985:Doxl2	APN	6	48977547	missense	probably benign
IGL01556:Doxl2	APN	6	48975684	missense	possibly damaging	0.58
IGL02083:Doxl2	APN	6	48976260	missense	probably damaging	1.00
IGL02135:Doxl2	APN	6	48975564	missense	probably benign	0.11
IGL02744:Doxl2	APN	6	48975315	missense	probably benign	0.15
IGL03005:Doxl2	APN	6	48976546	nonsense	probably null
R0306:Doxl2	UTSW	6	48976086	missense	probably damaging	1.00
R0380:Doxl2	UTSW	6	48975839	missense	probably benign
R0598:Doxl2	UTSW	6	48975537	missense	probably benign	0.36
R0948:Doxl2	UTSW	6	48976344	missense	probably damaging	1.00
R1404:Doxl2	UTSW	6	48975833	missense	probably benign	0.03
R1404:Doxl2	UTSW	6	48975833	missense	probably benign	0.03
R1432:Doxl2	UTSW	6	48975654	missense	probably damaging	1.00
R1443:Doxl2	UTSW	6	48975915	missense	probably damaging	1.00
R1535:Doxl2	UTSW	6	48975464	missense	probably damaging	0.98
R1625:Doxl2	UTSW	6	48975171	missense	probably damaging	1.00
R1872:Doxl2	UTSW	6	48975620	missense	probably benign	0.00
R2031:Doxl2	UTSW	6	48975855	missense	probably damaging	0.99
R2049:Doxl2	UTSW	6	48977755	nonsense	probably null
R2086:Doxl2	UTSW	6	48977602	missense	probably damaging	1.00
R2144:Doxl2	UTSW	6	48975291	missense	probably benign	0.00
R2145:Doxl2	UTSW	6	48976695	missense	probably damaging	1.00
R2152:Doxl2	UTSW	6	48976539	missense	probably damaging	1.00
R2255:Doxl2	UTSW	6	48975957	missense	possibly damaging	0.75
R2973:Doxl2	UTSW	6	48976424	missense	probably benign	0.07
R2974:Doxl2	UTSW	6	48976424	missense	probably benign	0.07
R3125:Doxl2	UTSW	6	48975371	missense	probably damaging	1.00
R4321:Doxl2	UTSW	6	48976522	missense	probably damaging	1.00
R4367:Doxl2	UTSW	6	48976130	missense	probably damaging	1.00
R4532:Doxl2	UTSW	6	48978167	missense	possibly damaging	0.77
R4575:Doxl2	UTSW	6	48977568	nonsense	probably null
R4611:Doxl2	UTSW	6	48975156	missense	probably benign	0.39
R4823:Doxl2	UTSW	6	48975261	missense	probably damaging	1.00
R5320:Doxl2	UTSW	6	48975540	missense	probably damaging	1.00
R5520:Doxl2	UTSW	6	48975794	missense	possibly damaging	0.93
R5698:Doxl2	UTSW	6	48976322	missense	possibly damaging	0.94
R5765:Doxl2	UTSW	6	48978537	missense	probably damaging	1.00
R6024:Doxl2	UTSW	6	48976096	missense	possibly damaging	0.71
R6061:Doxl2	UTSW	6	48976601	missense	probably benign	0.02
R6268:Doxl2	UTSW	6	48977682	missense	probably benign	0.01
R6564:Doxl2	UTSW	6	48977575	missense	probably benign	0.00
R6640:Doxl2	UTSW	6	48977671	missense	probably benign	0.21
R7131:Doxl2	UTSW	6	48976372	nonsense	probably null
R8678:Doxl2	UTSW	6	48976224	missense	possibly damaging	0.91
R8932:Doxl2	UTSW	6	48975494	missense	probably damaging	1.00
R9145:Doxl2	UTSW	6	48975956	missense	probably benign
R9280:Doxl2	UTSW	6	48978182	missense	possibly damaging	0.83
R9386:Doxl2	UTSW	6	48975390	missense	probably benign	0.19
R9492:Doxl2	UTSW	6	48978606	missense	probably benign	0.02
R9630:Doxl2	UTSW	6	48975822	missense	probably damaging	0.99
R9654:Doxl2	UTSW	6	48975903	missense	probably damaging	1.00
X0013:Doxl2	UTSW	6	48977613	missense	probably benign	0.09

Predicted Primers

PCR Primer
(F):5'- TGTCCAAAGCAGAGCAAAGC -3'
(R):5'- AAGACTTGTGGCAGCTCTGTG -3'

Sequencing Primer
(F):5'- GCAGAGCAAAGCCTTCTCTAC -3'
(R):5'- TCCTTGAGGACCACCGTGTC -3'

Posted On

2015-05-19