Incidental Mutation 'R4192:Syt12'
ID |
318376 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Syt12
|
Ensembl Gene |
ENSMUSG00000049303 |
Gene Name |
synaptotagmin XII |
Synonyms |
|
MMRRC Submission |
041023-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R4192 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
19 |
Chromosomal Location |
4495936-4527171 bp(-) (GRCm39) |
Type of Mutation |
utr 3 prime |
DNA Base Change (assembly) |
T to A
at 4497709 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000055237
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000059295]
|
AlphaFold |
Q920N7 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000059295
|
SMART Domains |
Protein: ENSMUSP00000055237 Gene: ENSMUSG00000049303
Domain | Start | End | E-Value | Type |
transmembrane domain
|
21 |
43 |
N/A |
INTRINSIC |
low complexity region
|
45 |
55 |
N/A |
INTRINSIC |
C2
|
168 |
272 |
1.8e-6 |
SMART |
C2
|
299 |
405 |
4.9e-20 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000128114
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000132579
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000133871
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000136632
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000154407
|
Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.6%
- 20x: 96.0%
|
Validation Efficiency |
100% (40/40) |
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the synaptotagmin gene family and encodes a protein similar to other family members that mediate calcium-dependent regulation of membrane trafficking in synaptic transmission. Studies of the orthologous gene in rat have shown that the encoded protein selectively modulates spontaneous synaptic-vesicle exocytosis and may also be involved in regulating calcium independent secretion in nonneuronal cells. Alternative splicing results in multiple transcript variants. The gene has previously been referred to as synaptotagmin XI but has been renamed synaptotagmin XII to be standard with mouse and rat official nomenclature.[provided by RefSeq, Apr 2010] PHENOTYPE: Mice homozygous for a knock-in allele are viable. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 37 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
4930474N05Rik |
G |
T |
14: 35,818,536 (GRCm39) |
R178L |
possibly damaging |
Het |
Acot4 |
T |
C |
12: 84,089,948 (GRCm39) |
|
probably benign |
Het |
Add3 |
C |
A |
19: 53,230,955 (GRCm39) |
D543E |
probably benign |
Het |
Angpt4 |
A |
C |
2: 151,785,238 (GRCm39) |
D418A |
probably benign |
Het |
Ano8 |
A |
T |
8: 71,935,936 (GRCm39) |
V260D |
probably damaging |
Het |
Cfh |
C |
T |
1: 140,030,454 (GRCm39) |
R860H |
possibly damaging |
Het |
Csmd3 |
T |
C |
15: 47,710,667 (GRCm39) |
D1536G |
probably damaging |
Het |
Dnajb9 |
A |
T |
12: 44,253,860 (GRCm39) |
D182E |
probably benign |
Het |
Epb42 |
G |
T |
2: 120,860,570 (GRCm39) |
|
probably null |
Het |
Fam185a |
T |
A |
5: 21,630,122 (GRCm39) |
|
probably benign |
Het |
Fer1l6 |
A |
G |
15: 58,518,998 (GRCm39) |
D1710G |
probably damaging |
Het |
Gabra2 |
G |
A |
5: 71,165,341 (GRCm39) |
P210S |
probably benign |
Het |
Gm8369 |
C |
T |
19: 11,479,596 (GRCm39) |
P9S |
probably damaging |
Het |
Il17ra |
A |
G |
6: 120,458,472 (GRCm39) |
D541G |
probably damaging |
Het |
Ints4 |
T |
G |
7: 97,156,940 (GRCm39) |
H337Q |
probably damaging |
Het |
Itgam |
A |
G |
7: 127,663,904 (GRCm39) |
T44A |
probably benign |
Het |
Lyst |
C |
A |
13: 13,915,098 (GRCm39) |
T3264N |
probably damaging |
Het |
Macf1 |
A |
G |
4: 123,366,835 (GRCm39) |
F1077S |
possibly damaging |
Het |
Myo3a |
T |
A |
2: 22,412,188 (GRCm39) |
F728I |
probably damaging |
Het |
Nacad |
T |
C |
11: 6,555,534 (GRCm39) |
E72G |
probably benign |
Het |
Nkain3 |
G |
A |
4: 20,485,003 (GRCm39) |
Q25* |
probably null |
Het |
Oca2 |
T |
C |
7: 55,946,997 (GRCm39) |
F342S |
probably damaging |
Het |
Or10d1c |
T |
A |
9: 38,894,313 (GRCm39) |
Q9L |
probably benign |
Het |
Osbpl6 |
T |
A |
2: 76,415,573 (GRCm39) |
L499Q |
probably damaging |
Het |
Pcdhgb8 |
G |
C |
18: 37,896,594 (GRCm39) |
D555H |
probably damaging |
Het |
Peak1 |
A |
T |
9: 56,166,025 (GRCm39) |
N634K |
probably damaging |
Het |
Pitpnm3 |
T |
C |
11: 71,942,785 (GRCm39) |
K818R |
possibly damaging |
Het |
Rab3gap1 |
T |
A |
1: 127,853,207 (GRCm39) |
|
probably benign |
Het |
Rcc1l |
T |
C |
5: 134,184,648 (GRCm39) |
T385A |
probably benign |
Het |
Rrm2 |
T |
C |
12: 24,758,377 (GRCm39) |
I11T |
probably benign |
Het |
Scnn1b |
A |
G |
7: 121,501,962 (GRCm39) |
T207A |
possibly damaging |
Het |
Spata31f3 |
A |
T |
4: 42,874,185 (GRCm39) |
|
probably benign |
Het |
Tmprss6 |
A |
T |
15: 78,330,857 (GRCm39) |
|
probably null |
Het |
Ttbk1 |
A |
T |
17: 46,790,173 (GRCm39) |
C91S |
probably damaging |
Het |
Ube2q2l |
T |
C |
6: 136,378,435 (GRCm39) |
T132A |
probably benign |
Het |
Vit |
A |
G |
17: 78,894,255 (GRCm39) |
H219R |
probably benign |
Het |
Vmn1r27 |
A |
C |
6: 58,192,812 (GRCm39) |
I14R |
probably damaging |
Het |
|
Other mutations in Syt12 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00584:Syt12
|
APN |
19 |
4,497,873 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL02045:Syt12
|
APN |
19 |
4,497,762 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02942:Syt12
|
APN |
19 |
4,497,858 (GRCm39) |
missense |
probably benign |
0.16 |
IGL03131:Syt12
|
APN |
19 |
4,506,882 (GRCm39) |
missense |
probably benign |
|
R1308:Syt12
|
UTSW |
19 |
4,510,763 (GRCm39) |
missense |
probably damaging |
0.99 |
R1830:Syt12
|
UTSW |
19 |
4,506,911 (GRCm39) |
missense |
probably benign |
|
R1858:Syt12
|
UTSW |
19 |
4,497,825 (GRCm39) |
missense |
probably damaging |
1.00 |
R5646:Syt12
|
UTSW |
19 |
4,506,569 (GRCm39) |
missense |
possibly damaging |
0.54 |
R5769:Syt12
|
UTSW |
19 |
4,501,072 (GRCm39) |
missense |
probably damaging |
1.00 |
R5785:Syt12
|
UTSW |
19 |
4,501,022 (GRCm39) |
missense |
possibly damaging |
0.95 |
R6079:Syt12
|
UTSW |
19 |
4,506,896 (GRCm39) |
missense |
probably benign |
|
R7017:Syt12
|
UTSW |
19 |
4,510,895 (GRCm39) |
splice site |
probably null |
|
R7043:Syt12
|
UTSW |
19 |
4,501,049 (GRCm39) |
missense |
probably benign |
0.04 |
R7137:Syt12
|
UTSW |
19 |
4,503,978 (GRCm39) |
missense |
probably damaging |
1.00 |
R7935:Syt12
|
UTSW |
19 |
4,497,830 (GRCm39) |
missense |
probably benign |
0.06 |
R8042:Syt12
|
UTSW |
19 |
4,503,852 (GRCm39) |
missense |
probably damaging |
0.98 |
R9468:Syt12
|
UTSW |
19 |
4,497,744 (GRCm39) |
missense |
probably damaging |
1.00 |
U15987:Syt12
|
UTSW |
19 |
4,506,896 (GRCm39) |
missense |
probably benign |
|
Z1177:Syt12
|
UTSW |
19 |
4,503,956 (GRCm39) |
missense |
probably damaging |
0.97 |
|
Predicted Primers |
PCR Primer
(F):5'- TTCTTCCATGACAGTCTGGACAG -3'
(R):5'- GAACCCTTTAGCTGCTCCTG -3'
Sequencing Primer
(F):5'- CATGACAGTCTGGACAGAGGATCC -3'
(R):5'- AGGACCTGTCTCTCCGGGTG -3'
|
Posted On |
2015-06-10 |