Incidental Mutation 'R4209:Man1c1'
ID 319059
Institutional Source Beutler Lab
Gene Symbol Man1c1
Ensembl Gene ENSMUSG00000037306
Gene Name mannosidase, alpha, class 1C, member 1
Synonyms
MMRRC Submission 041038-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.227) question?
Stock # R4209 (G1)
Quality Score 164
Status Validated
Chromosome 4
Chromosomal Location 134289001-134431601 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to C at 134430749 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Proline to Arginine at position 11 (P11R)
Ref Sequence ENSEMBL: ENSMUSP00000050979 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038628] [ENSMUST00000054096]
AlphaFold Q6NXK9
Predicted Effect probably damaging
Transcript: ENSMUST00000038628
AA Change: P11R

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000037949
Gene: ENSMUSG00000037306
AA Change: P11R

DomainStartEndE-ValueType
transmembrane domain 23 45 N/A INTRINSIC
low complexity region 80 91 N/A INTRINSIC
Pfam:Glyco_hydro_47 176 612 9.9e-147 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000054096
AA Change: P11R

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000050979
Gene: ENSMUSG00000037306
AA Change: P11R

DomainStartEndE-ValueType
transmembrane domain 23 45 N/A INTRINSIC
low complexity region 80 91 N/A INTRINSIC
Pfam:Glyco_hydro_47 176 612 1.1e-147 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000176606
Meta Mutation Damage Score 0.3035 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.4%
Validation Efficiency 98% (45/46)
Allele List at MGI
Other mutations in this stock
Total: 43 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aadacl2fm3 A T 3: 59,784,577 (GRCm39) Y350F probably damaging Het
Ahnak G A 19: 8,979,964 (GRCm39) G416D probably damaging Het
Ap3b2 C A 7: 81,126,884 (GRCm39) A289S probably benign Het
Arhgap23 C A 11: 97,345,322 (GRCm39) T657K probably damaging Het
Bcl9 A G 3: 97,117,269 (GRCm39) L475P probably damaging Het
Bean1 T A 8: 104,940,566 (GRCm39) M1K probably null Het
Cand1 T A 10: 119,047,463 (GRCm39) I676F probably benign Het
Casp3 G T 8: 47,088,423 (GRCm39) D107Y probably damaging Het
Cops4 T A 5: 100,695,352 (GRCm39) probably benign Het
Dchs1 A T 7: 105,415,397 (GRCm39) D626E probably damaging Het
Dpysl2 T C 14: 67,052,926 (GRCm39) S308G probably damaging Het
Fezf1 T C 6: 23,246,616 (GRCm39) K323E probably damaging Het
Gm10272 T C 10: 77,542,665 (GRCm39) V69A possibly damaging Het
Gtf2f1 A G 17: 57,318,003 (GRCm39) V11A probably benign Het
Hnf4a T C 2: 163,410,809 (GRCm39) S378P probably benign Het
Inpp5j T G 11: 3,451,107 (GRCm39) H514P probably damaging Het
Irf8 T A 8: 121,480,208 (GRCm39) Y149N probably damaging Het
Kel C T 6: 41,675,359 (GRCm39) W297* probably null Het
Mcpt8 G A 14: 56,321,375 (GRCm39) H30Y probably damaging Het
Mycl G T 4: 122,893,715 (GRCm39) V172L possibly damaging Het
Pcgf5 C A 19: 36,414,740 (GRCm39) N26K possibly damaging Het
Ppp2r2a A G 14: 67,266,328 (GRCm39) L111S probably damaging Het
Prdm2 T C 4: 142,861,007 (GRCm39) D761G probably damaging Het
Sec11a A T 7: 80,584,790 (GRCm39) I49N probably damaging Het
Sesn3 T C 9: 14,217,505 (GRCm39) I30T probably benign Het
Slc22a21 A G 11: 53,846,881 (GRCm39) S331P probably benign Het
Slc38a3 T G 9: 107,532,547 (GRCm39) S358R possibly damaging Het
Slc9a5 A G 8: 106,085,103 (GRCm39) N535D possibly damaging Het
Spns2 T C 11: 72,345,012 (GRCm39) D492G probably benign Het
Tcn2 T C 11: 3,872,114 (GRCm39) K338E possibly damaging Het
Tdp1 C A 12: 99,864,588 (GRCm39) A243E probably damaging Het
Tex16 T A X: 111,030,640 (GRCm39) D1046E probably benign Het
Tmem120a T C 5: 135,764,559 (GRCm39) N340S probably benign Het
Tnik A T 3: 28,413,214 (GRCm39) probably benign Het
Trim36 A G 18: 46,329,191 (GRCm39) L71P probably benign Het
Tube1 A G 10: 39,020,930 (GRCm39) probably null Het
Urgcp C A 11: 5,665,878 (GRCm39) G820V probably damaging Het
Veph1 A T 3: 66,151,967 (GRCm39) L154Q probably damaging Het
Vmn1r113 T C 7: 20,521,535 (GRCm39) V109A probably benign Het
Vmn1r152 A T 7: 22,223,004 (GRCm39) T205S possibly damaging Het
Wdsub1 G A 2: 59,707,149 (GRCm39) P28S probably damaging Het
Ybx2 G T 11: 69,826,767 (GRCm39) probably benign Het
Zfyve1 A T 12: 83,621,909 (GRCm39) V162E probably damaging Het
Other mutations in Man1c1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00835:Man1c1 APN 4 134,291,843 (GRCm39) missense probably damaging 1.00
IGL02237:Man1c1 APN 4 134,311,609 (GRCm39) critical splice donor site probably null
R0201:Man1c1 UTSW 4 134,367,709 (GRCm39) splice site probably null
R0390:Man1c1 UTSW 4 134,305,626 (GRCm39) missense probably damaging 1.00
R0526:Man1c1 UTSW 4 134,296,379 (GRCm39) nonsense probably null
R1108:Man1c1 UTSW 4 134,291,924 (GRCm39) missense probably damaging 1.00
R1518:Man1c1 UTSW 4 134,308,100 (GRCm39) missense probably benign 0.01
R1756:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R1866:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R1914:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R1915:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R2171:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R2172:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R2937:Man1c1 UTSW 4 134,430,263 (GRCm39) missense possibly damaging 0.72
R2938:Man1c1 UTSW 4 134,430,263 (GRCm39) missense possibly damaging 0.72
R2971:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R3806:Man1c1 UTSW 4 134,430,662 (GRCm39) missense probably damaging 1.00
R3977:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R3979:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R4037:Man1c1 UTSW 4 134,320,650 (GRCm39) missense probably damaging 1.00
R4065:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R4066:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R4067:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R4210:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R4211:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R4290:Man1c1 UTSW 4 134,291,096 (GRCm39) missense probably damaging 1.00
R4431:Man1c1 UTSW 4 134,430,329 (GRCm39) missense probably damaging 1.00
R4694:Man1c1 UTSW 4 134,430,500 (GRCm39) missense probably benign 0.27
R4766:Man1c1 UTSW 4 134,430,749 (GRCm39) missense probably damaging 1.00
R5226:Man1c1 UTSW 4 134,305,680 (GRCm39) missense probably damaging 1.00
R5637:Man1c1 UTSW 4 134,318,735 (GRCm39) missense probably damaging 1.00
R5677:Man1c1 UTSW 4 134,296,371 (GRCm39) missense probably damaging 1.00
R5939:Man1c1 UTSW 4 134,293,147 (GRCm39) missense probably damaging 0.99
R7251:Man1c1 UTSW 4 134,308,147 (GRCm39) missense probably damaging 1.00
R7577:Man1c1 UTSW 4 134,291,814 (GRCm39) critical splice donor site probably null
R8551:Man1c1 UTSW 4 134,430,326 (GRCm39) nonsense probably null
R8745:Man1c1 UTSW 4 134,303,295 (GRCm39) missense probably damaging 0.96
R9116:Man1c1 UTSW 4 134,311,705 (GRCm39) missense possibly damaging 0.91
R9272:Man1c1 UTSW 4 134,291,118 (GRCm39) missense probably damaging 1.00
R9406:Man1c1 UTSW 4 134,303,318 (GRCm39) missense probably damaging 1.00
X0019:Man1c1 UTSW 4 134,303,318 (GRCm39) missense probably damaging 1.00
X0062:Man1c1 UTSW 4 134,430,683 (GRCm39) missense possibly damaging 0.74
X0063:Man1c1 UTSW 4 134,303,288 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CCTTTCCTACGGAGAACACC -3'
(R):5'- CCAAACTCCCTGAACTTCGG -3'

Sequencing Primer
(F):5'- TCCTGCTCTGACACCGAGTG -3'
(R):5'- TGAACTTCGGGCGGGTC -3'
Posted On 2015-06-10