Mutagenetix > Incidental Mutation

Incidental Mutation 'R4214:Vmn1r213'

319365

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r213

Ensembl Gene

ENSMUSG00000060024

Gene Name

vomeronasal 1 receptor 213

Synonyms

V1rh6

MMRRC Submission

041041-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.078) question?

Stock #

R4214 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

23195419-23196573 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 23196173 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Tyrosine at position 252 (C252Y)

Ref Sequence

ENSEMBL: ENSMUSP00000153766 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000076897] [ENSMUST00000227573] [ENSMUST00000228031] [ENSMUST00000228758]

AlphaFold

Q8R278

Predicted Effect

possibly damaging
Transcript: ENSMUST00000076897
AA Change: C252Y

PolyPhen 2 Score 0.948 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000076163
Gene: ENSMUSG00000060024
AA Change: C252Y

Domain	Start	End	E-Value	Type
transmembrane domain	95	117	N/A	INTRINSIC
Pfam:V1R	118	382	4.3e-31	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000227573
AA Change: C166Y

PolyPhen 2 Score 0.544 (Sensitivity: 0.88; Specificity: 0.91)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000228031
AA Change: C166Y

PolyPhen 2 Score 0.544 (Sensitivity: 0.88; Specificity: 0.91)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000228758
AA Change: C252Y

PolyPhen 2 Score 0.948 (Sensitivity: 0.79; Specificity: 0.95)

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.2%
20x: 95.5%

Validation Efficiency

98% (64/65)

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A730013G03Rik	C	T	1: 192,515,845 (GRCm39)		noncoding transcript	Het
Abca12	T	A	1: 71,327,856 (GRCm39)	D1408V	probably damaging	Het
Abca13	A	T	11: 9,243,877 (GRCm39)	L1913F	probably damaging	Het
Acad9	A	G	3: 36,127,752 (GRCm39)	E118G	probably damaging	Het
Adamts5	G	A	16: 85,665,531 (GRCm39)	A590V	probably damaging	Het
Ano6	A	C	15: 95,863,790 (GRCm39)	Y791S	probably benign	Het
Aox1	T	C	1: 58,346,603 (GRCm39)		probably null	Het
Aox4	T	A	1: 58,261,051 (GRCm39)	I128N	probably damaging	Het
Atp2b3	A	G	X: 72,613,921 (GRCm39)	M1142V	probably benign	Het
AU041133	A	G	10: 81,987,223 (GRCm39)	H292R	probably damaging	Het
Bco2	A	G	9: 50,456,666 (GRCm39)	M158T	probably benign	Het
Bpnt1	T	A	1: 185,077,626 (GRCm39)		probably benign	Het
Cadm1	A	G	9: 47,708,741 (GRCm39)	D157G	probably damaging	Het
Catsperg1	T	C	7: 28,895,357 (GRCm39)	R499G	possibly damaging	Het
Ccr7	T	C	11: 99,035,872 (GRCm39)	E350G	probably damaging	Het
Ceacam5	T	A	7: 17,486,076 (GRCm39)	S524R	probably benign	Het
Cep78	T	C	19: 15,936,943 (GRCm39)	T588A	probably benign	Het
Cfap65	T	A	1: 74,966,840 (GRCm39)	E282D	possibly damaging	Het
Drd2	A	G	9: 49,316,221 (GRCm39)	K327R	probably benign	Het
Erich5	C	T	15: 34,471,557 (GRCm39)	P262L	possibly damaging	Het
Ezh2	A	C	6: 47,510,748 (GRCm39)	D578E	probably damaging	Het
Fez1	A	G	9: 36,781,784 (GRCm39)	N20S	probably damaging	Het
Folr2	T	G	7: 101,492,906 (GRCm39)	K39T	probably damaging	Het
Gm10549	G	T	18: 33,597,530 (GRCm39)		probably null	Het
Gm14393	C	T	2: 174,903,640 (GRCm39)	C89Y	probably benign	Het
Gm5329	T	G	7: 31,671,828 (GRCm39)		noncoding transcript	Het
Gm7367	A	G	7: 59,805,517 (GRCm39)		noncoding transcript	Het
Gpr162	A	T	6: 124,837,031 (GRCm39)	W338R	probably damaging	Het
Ift80	A	T	3: 68,898,141 (GRCm39)	F65I	possibly damaging	Het
Klra6	T	G	6: 129,995,885 (GRCm39)	I158L	probably benign	Het
Lpp	T	A	16: 24,580,804 (GRCm39)	Y173*	probably null	Het
Lrp12	A	G	15: 39,735,976 (GRCm39)	V671A	probably benign	Het
Lrrc27	C	T	7: 138,803,609 (GRCm39)	R178C	probably damaging	Het
Lrrc49	G	A	9: 60,573,609 (GRCm39)	T225M	probably benign	Het
Megf8	T	A	7: 25,054,793 (GRCm39)	S1915T	probably benign	Het
Mmadhc	T	C	2: 50,181,344 (GRCm39)	T109A	probably benign	Het
Mon2	T	C	10: 122,852,397 (GRCm39)	E992G	probably benign	Het
Msl3	A	G	X: 167,450,059 (GRCm39)	I267T	probably damaging	Het
Msl3	A	T	X: 167,445,430 (GRCm39)	N430K	probably damaging	Het
Nab2	G	T	10: 127,500,917 (GRCm39)	Y25*	probably null	Het
Notch3	T	C	17: 32,351,181 (GRCm39)	E1938G	possibly damaging	Het
Or5ae2	C	T	7: 84,506,497 (GRCm39)	H307Y	probably benign	Het
Osgepl1	A	G	1: 53,354,167 (GRCm39)	T44A	probably damaging	Het
Pdpr	A	G	8: 111,856,212 (GRCm39)		probably benign	Het
Pfkp	A	G	13: 6,669,261 (GRCm39)	S241P	probably damaging	Het
Phgdh	A	T	3: 98,235,377 (GRCm39)	S166T	possibly damaging	Het
Plcl1	C	T	1: 55,790,494 (GRCm39)	Q1055*	probably null	Het
Plscr2	A	G	9: 92,169,790 (GRCm39)	N80S	probably benign	Het
Polr3k	A	T	2: 181,510,035 (GRCm39)	M80L	probably benign	Het
Prex2	A	G	1: 11,171,383 (GRCm39)	D304G	probably damaging	Het
Prex2	A	G	1: 11,355,285 (GRCm39)	T1529A	probably damaging	Het
Rcvrn	A	T	11: 67,586,514 (GRCm39)	H91L	possibly damaging	Het
Rin2	C	T	2: 145,702,366 (GRCm39)	T354I	probably benign	Het
Tbx18	T	C	9: 87,606,518 (GRCm39)	Y209C	probably damaging	Het
Themis3	T	C	17: 66,867,012 (GRCm39)	N76S	probably benign	Het
Trhde	A	T	10: 114,623,975 (GRCm39)	S310T	possibly damaging	Het
Zfp523	T	C	17: 28,420,003 (GRCm39)	V216A	probably benign	Het

Other mutations in Vmn1r213

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0018:Vmn1r213	UTSW	13	23,196,311 (GRCm39)	missense	probably damaging	1.00
R0094:Vmn1r213	UTSW	13	23,195,819 (GRCm39)	missense	probably damaging	1.00
R0324:Vmn1r213	UTSW	13	23,195,588 (GRCm39)	intron	probably benign
R0389:Vmn1r213	UTSW	13	23,195,932 (GRCm39)	missense	probably benign	0.00
R0650:Vmn1r213	UTSW	13	23,195,564 (GRCm39)	intron	probably benign
R0652:Vmn1r213	UTSW	13	23,195,564 (GRCm39)	intron	probably benign
R1902:Vmn1r213	UTSW	13	23,196,476 (GRCm39)	missense	possibly damaging	0.87
R1996:Vmn1r213	UTSW	13	23,196,473 (GRCm39)	missense	probably benign	0.02
R1997:Vmn1r213	UTSW	13	23,196,473 (GRCm39)	missense	probably benign	0.02
R4409:Vmn1r213	UTSW	13	23,195,593 (GRCm39)	intron	probably benign
R4650:Vmn1r213	UTSW	13	23,196,422 (GRCm39)	missense	possibly damaging	0.80
R4685:Vmn1r213	UTSW	13	23,195,800 (GRCm39)	missense	probably benign	0.05
R4698:Vmn1r213	UTSW	13	23,195,507 (GRCm39)	intron	probably benign
R4799:Vmn1r213	UTSW	13	23,196,016 (GRCm39)	missense	probably damaging	1.00
R4807:Vmn1r213	UTSW	13	23,195,775 (GRCm39)	nonsense	probably null
R5853:Vmn1r213	UTSW	13	23,195,684 (GRCm39)	missense	probably benign	0.32
R7389:Vmn1r213	UTSW	13	23,196,556 (GRCm39)	missense	probably benign	0.18
R7414:Vmn1r213	UTSW	13	23,195,446 (GRCm39)	missense	unknown
R8054:Vmn1r213	UTSW	13	23,195,910 (GRCm39)	missense	possibly damaging	0.93
R9069:Vmn1r213	UTSW	13	23,196,043 (GRCm39)	missense	probably damaging	1.00
R9155:Vmn1r213	UTSW	13	23,196,343 (GRCm39)	nonsense	probably null
R9428:Vmn1r213	UTSW	13	23,195,944 (GRCm39)	missense
R9469:Vmn1r213	UTSW	13	23,196,101 (GRCm39)	missense	probably benign	0.22
R9633:Vmn1r213	UTSW	13	23,195,519 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- GCCATCATCATCAGTCCCAGAG -3'
(R):5'- GCATCAGAAGGAGGACACTTTG -3'

Sequencing Primer
(F):5'- TCATCAGTCCCAGAGCATCTG -3'
(R):5'- AGGACACTTTGAGCAGCTCTC -3'

Posted On

2015-06-10