Incidental Mutation 'R4240:Zbtb38'
| ID |
320177 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Zbtb38
|
| Ensembl Gene |
ENSMUSG00000040433 |
| Gene Name |
zinc finger and BTB domain containing 38 |
| Synonyms |
A930014K01Rik, Zenon homolog, CIBZ |
| MMRRC Submission |
041057-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly essential
(E-score: 0.530)
|
| Stock # |
R4240 (G1)
|
| Quality Score |
113 |
|
Status
|
Validated
|
| Chromosome |
9 |
| Chromosomal Location |
96564820-96613728 bp(-) (GRCm39) |
| Type of Mutation |
small deletion (1 aa in frame mutation) |
| DNA Base Change (assembly) |
CTCTTCTTCTTCTTCTTCTTCTTC to CTCTTCTTCTTCTTCTTCTTC
at 96568155 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000121753
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000093798]
[ENSMUST00000126066]
[ENSMUST00000128269]
[ENSMUST00000140121]
[ENSMUST00000152594]
|
| AlphaFold |
Q3LR78 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000093798
|
| SMART Domains |
Protein: ENSMUSP00000091315
Gene: ENSMUSG00000040433
| Domain | Start | End | E-Value | Type |
|---|
|
BTB
|
33 |
131 |
5.68e-20 |
SMART |
|
low complexity region
|
140 |
151 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
340 |
362 |
7.67e-2 |
SMART |
|
ZnF_C2H2
|
369 |
396 |
7.29e0 |
SMART |
|
low complexity region
|
435 |
446 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
458 |
480 |
2.2e-2 |
SMART |
|
ZnF_C2H2
|
486 |
508 |
1.05e1 |
SMART |
|
ZnF_C2H2
|
514 |
537 |
8.09e-1 |
SMART |
|
low complexity region
|
911 |
935 |
N/A |
INTRINSIC |
|
low complexity region
|
994 |
1002 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
1013 |
1035 |
3.63e-3 |
SMART |
|
ZnF_C2H2
|
1041 |
1063 |
9.73e-4 |
SMART |
|
ZnF_C2H2
|
1069 |
1091 |
1.45e-2 |
SMART |
|
ZnF_C2H2
|
1097 |
1119 |
1.02e1 |
SMART |
|
ZnF_C2H2
|
1128 |
1150 |
1.67e-2 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000126066
|
| SMART Domains |
Protein: ENSMUSP00000114300
Gene: ENSMUSG00000040433
| Domain | Start | End | E-Value | Type |
|---|
|
BTB
|
33 |
131 |
5.68e-20 |
SMART |
|
low complexity region
|
140 |
151 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
340 |
362 |
7.67e-2 |
SMART |
|
ZnF_C2H2
|
369 |
396 |
7.29e0 |
SMART |
|
low complexity region
|
435 |
446 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
458 |
480 |
2.2e-2 |
SMART |
|
ZnF_C2H2
|
486 |
508 |
1.05e1 |
SMART |
|
ZnF_C2H2
|
514 |
537 |
8.09e-1 |
SMART |
|
low complexity region
|
911 |
926 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000128269
|
| SMART Domains |
Protein: ENSMUSP00000121871
Gene: ENSMUSG00000040433
| Domain | Start | End | E-Value | Type |
|---|
|
BTB
|
33 |
131 |
5.68e-20 |
SMART |
|
low complexity region
|
140 |
151 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000140121
|
| SMART Domains |
Protein: ENSMUSP00000120040
Gene: ENSMUSG00000040433
| Domain | Start | End | E-Value | Type |
|---|
|
BTB
|
33 |
131 |
5.68e-20 |
SMART |
|
low complexity region
|
140 |
151 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
340 |
362 |
7.67e-2 |
SMART |
|
ZnF_C2H2
|
369 |
396 |
7.29e0 |
SMART |
|
low complexity region
|
435 |
446 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
458 |
480 |
2.2e-2 |
SMART |
|
ZnF_C2H2
|
486 |
508 |
1.05e1 |
SMART |
|
ZnF_C2H2
|
514 |
537 |
8.09e-1 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000152594
|
| SMART Domains |
Protein: ENSMUSP00000121753
Gene: ENSMUSG00000040433
| Domain | Start | End | E-Value | Type |
|---|
|
BTB
|
33 |
131 |
5.68e-20 |
SMART |
|
low complexity region
|
140 |
151 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
340 |
362 |
7.67e-2 |
SMART |
|
ZnF_C2H2
|
369 |
396 |
7.29e0 |
SMART |
|
low complexity region
|
435 |
446 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
458 |
480 |
2.2e-2 |
SMART |
|
ZnF_C2H2
|
486 |
508 |
1.05e1 |
SMART |
|
ZnF_C2H2
|
514 |
537 |
8.09e-1 |
SMART |
|
low complexity region
|
911 |
935 |
N/A |
INTRINSIC |
|
low complexity region
|
994 |
1002 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
1013 |
1035 |
3.63e-3 |
SMART |
|
ZnF_C2H2
|
1041 |
1063 |
9.73e-4 |
SMART |
|
ZnF_C2H2
|
1069 |
1091 |
1.45e-2 |
SMART |
|
ZnF_C2H2
|
1097 |
1119 |
1.02e1 |
SMART |
|
ZnF_C2H2
|
1128 |
1150 |
1.67e-2 |
SMART |
|
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.8%
- 10x: 97.5%
- 20x: 95.7%
|
| Validation Efficiency |
93% (50/54) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a zinc finger transcriptional activator that binds methylated DNA. The encoded protein can form homodimers or heterodimers through the zinc finger domains. In mouse, inhibition of this protein has been associated with apoptosis in some cell types. [provided by RefSeq, Jun 2010]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 47 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4833420G17Rik |
C |
T |
13: 119,603,478 (GRCm39) |
P93S |
probably benign |
Het |
| 4930488N24Rik |
A |
T |
17: 14,326,049 (GRCm39) |
|
noncoding transcript |
Het |
| Areg |
A |
T |
5: 91,291,375 (GRCm39) |
N106I |
probably damaging |
Het |
| Ceacam3 |
G |
A |
7: 16,893,949 (GRCm39) |
E487K |
possibly damaging |
Het |
| Cfap46 |
G |
T |
7: 139,246,203 (GRCm39) |
Q387K |
possibly damaging |
Het |
| Cfap74 |
C |
A |
4: 155,547,529 (GRCm39) |
H1238Q |
probably benign |
Het |
| Cnot6l |
T |
C |
5: 96,225,221 (GRCm39) |
T491A |
probably benign |
Het |
| Cog7 |
C |
T |
7: 121,524,707 (GRCm39) |
V696M |
possibly damaging |
Het |
| Col22a1 |
C |
T |
15: 71,878,980 (GRCm39) |
G59D |
probably damaging |
Het |
| Ddi1 |
A |
G |
9: 6,265,799 (GRCm39) |
M190T |
probably benign |
Het |
| Eno1b |
T |
A |
18: 48,180,907 (GRCm39) |
S362T |
probably benign |
Het |
| Erbb2 |
A |
G |
11: 98,318,869 (GRCm39) |
K549R |
probably benign |
Het |
| Fam170a |
A |
T |
18: 50,414,734 (GRCm39) |
M127L |
possibly damaging |
Het |
| Gm1979 |
T |
C |
5: 26,206,119 (GRCm39) |
T154A |
probably benign |
Het |
| Gm6871 |
G |
T |
7: 41,195,204 (GRCm39) |
T511K |
probably damaging |
Het |
| Hsf4 |
A |
G |
8: 106,001,513 (GRCm39) |
T378A |
possibly damaging |
Het |
| Irf2bpl |
C |
A |
12: 86,929,691 (GRCm39) |
Q327H |
possibly damaging |
Het |
| Klk6 |
A |
G |
7: 43,478,597 (GRCm39) |
H168R |
probably benign |
Het |
| Kmt2d |
G |
A |
15: 98,742,452 (GRCm39) |
|
probably benign |
Het |
| Kplce |
T |
C |
3: 92,775,898 (GRCm39) |
I262V |
possibly damaging |
Het |
| Lad1 |
T |
A |
1: 135,755,033 (GRCm39) |
V103D |
possibly damaging |
Het |
| Mcm4 |
A |
T |
16: 15,445,570 (GRCm39) |
Y692* |
probably null |
Het |
| Med15 |
C |
T |
16: 17,473,358 (GRCm39) |
R497H |
probably damaging |
Het |
| Mfrp |
T |
C |
9: 44,014,163 (GRCm39) |
V177A |
possibly damaging |
Het |
| Mr1 |
T |
C |
1: 155,012,413 (GRCm39) |
E167G |
probably damaging |
Het |
| Myo18b |
A |
G |
5: 112,951,053 (GRCm39) |
|
probably null |
Het |
| Myom2 |
A |
G |
8: 15,182,895 (GRCm39) |
D1444G |
probably benign |
Het |
| Nes |
C |
A |
3: 87,886,666 (GRCm39) |
P1598T |
probably damaging |
Het |
| Nlrp4d |
A |
T |
7: 10,115,243 (GRCm39) |
H479Q |
noncoding transcript |
Het |
| Nphp4 |
A |
G |
4: 152,640,141 (GRCm39) |
D1009G |
probably benign |
Het |
| Or13a25 |
A |
G |
7: 140,247,496 (GRCm39) |
N99D |
probably benign |
Het |
| Pate10 |
T |
A |
9: 35,653,449 (GRCm39) |
Y84* |
probably null |
Het |
| Phactr1 |
T |
A |
13: 43,248,363 (GRCm39) |
N437K |
possibly damaging |
Het |
| Polq |
G |
T |
16: 36,833,543 (GRCm39) |
V79F |
probably damaging |
Het |
| Prc1 |
G |
A |
7: 79,960,964 (GRCm39) |
|
probably benign |
Het |
| Rdh7 |
T |
C |
10: 127,721,671 (GRCm39) |
I202V |
probably benign |
Het |
| Rsf1 |
C |
CGGCGGCGGT |
7: 97,229,142 (GRCm39) |
|
probably benign |
Het |
| Sgsm3 |
A |
G |
15: 80,895,983 (GRCm39) |
|
probably benign |
Het |
| Sipa1l2 |
T |
C |
8: 126,218,395 (GRCm39) |
E314G |
probably benign |
Het |
| Slc8a3 |
T |
C |
12: 81,361,950 (GRCm39) |
K290E |
probably damaging |
Het |
| Tbc1d17 |
T |
C |
7: 44,496,250 (GRCm39) |
Y84C |
probably damaging |
Het |
| Usp46 |
T |
G |
5: 74,192,928 (GRCm39) |
|
probably benign |
Het |
| Vmn2r14 |
T |
G |
5: 109,364,277 (GRCm39) |
|
probably null |
Het |
| Vmn2r8 |
A |
T |
5: 108,945,369 (GRCm39) |
V746D |
probably damaging |
Het |
| Xdh |
A |
G |
17: 74,202,790 (GRCm39) |
V1120A |
possibly damaging |
Het |
| Zfp791 |
T |
C |
8: 85,836,295 (GRCm39) |
H523R |
probably null |
Het |
| Zfp870 |
A |
G |
17: 33,104,710 (GRCm39) |
I53T |
probably benign |
Het |
|
| Other mutations in Zbtb38 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00228:Zbtb38
|
APN |
9 |
96,569,547 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01895:Zbtb38
|
APN |
9 |
96,570,461 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02513:Zbtb38
|
APN |
9 |
96,569,126 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02649:Zbtb38
|
APN |
9 |
96,568,672 (GRCm39) |
missense |
probably damaging |
0.96 |
|
IGL02938:Zbtb38
|
APN |
9 |
96,569,227 (GRCm39) |
missense |
probably benign |
0.11 |
|
PIT4131001:Zbtb38
|
UTSW |
9 |
96,568,369 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0048:Zbtb38
|
UTSW |
9 |
96,569,729 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0152:Zbtb38
|
UTSW |
9 |
96,568,333 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0158:Zbtb38
|
UTSW |
9 |
96,568,993 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R0519:Zbtb38
|
UTSW |
9 |
96,567,826 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0594:Zbtb38
|
UTSW |
9 |
96,568,007 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1556:Zbtb38
|
UTSW |
9 |
96,569,044 (GRCm39) |
missense |
probably benign |
0.26 |
|
R1698:Zbtb38
|
UTSW |
9 |
96,567,515 (GRCm39) |
missense |
probably benign |
|
|
R1772:Zbtb38
|
UTSW |
9 |
96,570,094 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1799:Zbtb38
|
UTSW |
9 |
96,570,934 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1837:Zbtb38
|
UTSW |
9 |
96,569,048 (GRCm39) |
missense |
probably benign |
|
|
R2446:Zbtb38
|
UTSW |
9 |
96,569,699 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3153:Zbtb38
|
UTSW |
9 |
96,570,302 (GRCm39) |
missense |
probably benign |
0.34 |
|
R3950:Zbtb38
|
UTSW |
9 |
96,569,599 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4630:Zbtb38
|
UTSW |
9 |
96,570,904 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4666:Zbtb38
|
UTSW |
9 |
96,570,436 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4732:Zbtb38
|
UTSW |
9 |
96,569,737 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4733:Zbtb38
|
UTSW |
9 |
96,569,737 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4824:Zbtb38
|
UTSW |
9 |
96,570,254 (GRCm39) |
missense |
probably benign |
0.06 |
|
R5006:Zbtb38
|
UTSW |
9 |
96,567,704 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5109:Zbtb38
|
UTSW |
9 |
96,569,062 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5251:Zbtb38
|
UTSW |
9 |
96,569,161 (GRCm39) |
missense |
probably benign |
0.43 |
|
R5396:Zbtb38
|
UTSW |
9 |
96,569,696 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5659:Zbtb38
|
UTSW |
9 |
96,569,473 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6249:Zbtb38
|
UTSW |
9 |
96,568,045 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6294:Zbtb38
|
UTSW |
9 |
96,569,282 (GRCm39) |
missense |
probably benign |
0.05 |
|
R6615:Zbtb38
|
UTSW |
9 |
96,568,707 (GRCm39) |
nonsense |
probably null |
|
|
R6625:Zbtb38
|
UTSW |
9 |
96,569,366 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6885:Zbtb38
|
UTSW |
9 |
96,568,517 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7304:Zbtb38
|
UTSW |
9 |
96,569,480 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R7675:Zbtb38
|
UTSW |
9 |
96,567,594 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7823:Zbtb38
|
UTSW |
9 |
96,568,029 (GRCm39) |
nonsense |
probably null |
|
|
R7900:Zbtb38
|
UTSW |
9 |
96,570,989 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8077:Zbtb38
|
UTSW |
9 |
96,570,153 (GRCm39) |
missense |
probably benign |
|
|
R8432:Zbtb38
|
UTSW |
9 |
96,568,291 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
R8802:Zbtb38
|
UTSW |
9 |
96,567,623 (GRCm39) |
missense |
probably benign |
0.13 |
|
R8930:Zbtb38
|
UTSW |
9 |
96,568,434 (GRCm39) |
missense |
probably benign |
0.04 |
|
R8932:Zbtb38
|
UTSW |
9 |
96,568,434 (GRCm39) |
missense |
probably benign |
0.04 |
|
R9008:Zbtb38
|
UTSW |
9 |
96,569,100 (GRCm39) |
missense |
probably benign |
|
|
R9347:Zbtb38
|
UTSW |
9 |
96,567,649 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9520:Zbtb38
|
UTSW |
9 |
96,568,104 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9568:Zbtb38
|
UTSW |
9 |
96,570,944 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9680:Zbtb38
|
UTSW |
9 |
96,570,397 (GRCm39) |
missense |
probably benign |
0.03 |
|
R9777:Zbtb38
|
UTSW |
9 |
96,570,356 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R9777:Zbtb38
|
UTSW |
9 |
96,570,355 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
R9790:Zbtb38
|
UTSW |
9 |
96,570,700 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9791:Zbtb38
|
UTSW |
9 |
96,570,700 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0066:Zbtb38
|
UTSW |
9 |
96,569,665 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TCTCCAGTGTGGCATCTCATG -3'
(R):5'- GACCAGGACTCCACTGATAAG -3'
Sequencing Primer
(F):5'- CAGTGTGGCATCTCATGTGCATC -3'
(R):5'- AGGACTCCACTGATAAGCCGTG -3'
|
| Posted On |
2015-06-12 |
Incidental Mutation