Mutagenetix > Incidental Mutation

Incidental Mutation 'R4241:Csnk1e'

320230

Institutional Source

Beutler Lab

Gene Symbol

Csnk1e

Ensembl Gene

ENSMUSG00000022433

Gene Name

casein kinase 1, epsilon

Synonyms

tau, CKIepsilon, CK1epsilon, CKI epsilon, KC1epsilon

MMRRC Submission

041058-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4241 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

79302056-79339767 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 79309095 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Serine at position 277 (F277S)

Ref Sequence

ENSEMBL: ENSMUSP00000113096 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000117786] [ENSMUST00000120859] [ENSMUST00000122044] [ENSMUST00000135519] [ENSMUST00000229510] [ENSMUST00000230599] [ENSMUST00000144790] [ENSMUST00000230942]

AlphaFold

Q9JMK2

Predicted Effect

probably damaging
Transcript: ENSMUST00000117786
AA Change: F277S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000113341
Gene: ENSMUSG00000022433
AA Change: F277S

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	9	273	8.7e-18	PFAM
Pfam:Pkinase	9	277	5.2e-28	PFAM
low complexity region	306	316	N/A	INTRINSIC
low complexity region	329	338	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000120859
AA Change: F277S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000113975
Gene: ENSMUSG00000022433
AA Change: F277S

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	9	273	9.8e-18	PFAM
Pfam:Pkinase	9	280	7e-40	PFAM
low complexity region	306	316	N/A	INTRINSIC
low complexity region	329	338	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000122044
AA Change: F277S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000113096
Gene: ENSMUSG00000022433
AA Change: F277S

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	9	273	7.9e-18	PFAM
Pfam:Pkinase	9	280	5.7e-40	PFAM
low complexity region	309	324	N/A	INTRINSIC
low complexity region	345	350	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127155

Predicted Effect

probably benign
Transcript: ENSMUST00000135519

SMART Domains

Protein: ENSMUSP00000122135
Gene: ENSMUSG00000022433

Domain	Start	End	E-Value	Type
Pfam:Pkinase	9	118	1.5e-11	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135583

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136003

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156513

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137028

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145740

Predicted Effect

probably benign
Transcript: ENSMUST00000229510

Predicted Effect

probably benign
Transcript: ENSMUST00000230599

Predicted Effect

probably benign
Transcript: ENSMUST00000144790

SMART Domains

Protein: ENSMUSP00000115637
Gene: ENSMUSG00000022433

Domain	Start	End	E-Value	Type
Pfam:Pkinase	9	141	9.3e-24	PFAM
Pfam:Pkinase_Tyr	9	141	5.6e-12	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000230942

Meta Mutation Damage Score

0.7777

Coding Region Coverage

1x: 99.3%
3x: 98.8%
10x: 97.6%
20x: 95.9%

Validation Efficiency

98% (49/50)

MGI Phenotype

FUNCTION: The protein encoded by this gene is a serine/threonine protein kinase and a member of the casein kinase I protein family, whose members have been implicated in the control of cytoplasmic and nuclear processes, including DNA replication and repair. The encoded protein is found in the cytoplasm as a monomer and can phosphorylate a variety of proteins, including itself. This protein has been shown to phosphorylate period, a circadian rhythm protein. Three transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Feb 2014]
PHENOTYPE: Mice homozygous for a null allele exhibit disruptions in circadian rhythms. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 44 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Agl	A	T	3: 116,548,497 (GRCm39)		probably benign	Het
Ap5b1	C	T	19: 5,618,825 (GRCm39)	L82F	possibly damaging	Het
Arfgef3	A	G	10: 18,500,912 (GRCm39)	S1113P	probably damaging	Het
Atoh1	A	C	6: 64,706,758 (GRCm39)	N151T	probably damaging	Het
Bcas3	T	A	11: 85,361,652 (GRCm39)	S25R	probably damaging	Het
Blcap	T	A	2: 157,402,343 (GRCm39)		probably benign	Het
Btbd6	C	T	12: 112,940,416 (GRCm39)	A13V	probably benign	Het
Ccdc83	A	C	7: 89,896,346 (GRCm39)	N74K	probably damaging	Het
Cdh9	A	G	15: 16,849,165 (GRCm39)		probably null	Het
Chd1	C	T	17: 15,990,289 (GRCm39)	R1614*	probably null	Het
Col16a1	G	T	4: 129,992,843 (GRCm39)	Q1567H	probably damaging	Het
Coq6	A	T	12: 84,420,563 (GRCm39)		probably benign	Het
Cpd	T	C	11: 76,737,611 (GRCm39)	D61G	probably benign	Het
Cyp2d41-ps	T	A	15: 82,663,787 (GRCm39)		noncoding transcript	Het
Dbt	T	C	3: 116,326,945 (GRCm39)	I98T	probably damaging	Het
Eif3e	G	A	15: 43,126,086 (GRCm39)	T287I	probably damaging	Het
Fcgbpl1	A	G	7: 27,853,760 (GRCm39)	S1575G	probably damaging	Het
Gm7135	A	G	1: 97,281,678 (GRCm39)		noncoding transcript	Het
Gpr176	A	T	2: 118,110,091 (GRCm39)	S389R	probably benign	Het
Hax1	A	G	3: 89,902,997 (GRCm39)	S257P	probably damaging	Het
Herc1	CTGAGGACTCTTTG	CTG	9: 66,355,630 (GRCm39)		probably null	Het
Ighv1-53	C	T	12: 115,122,442 (GRCm39)	C5Y	probably benign	Het
Klhl13	T	A	X: 23,181,414 (GRCm39)	D2V	probably damaging	Het
Kynu	A	T	2: 43,571,422 (GRCm39)	H446L	probably benign	Het
Lingo1	A	G	9: 56,527,386 (GRCm39)	F401S	probably damaging	Het
Lmbrd1	C	T	1: 24,732,049 (GRCm39)	Q89*	probably null	Het
Mov10	T	A	3: 104,704,592 (GRCm39)	Q773L	probably benign	Het
Or52e19	G	T	7: 102,959,868 (GRCm39)	*313Y	probably null	Het
Or7c70	T	A	10: 78,683,739 (GRCm39)	R3S	probably benign	Het
Pde6c	G	A	19: 38,151,293 (GRCm39)	G608S	probably damaging	Het
Peli3	T	C	19: 4,982,426 (GRCm39)	H413R	probably damaging	Het
Pkdrej	C	T	15: 85,702,345 (GRCm39)	R1197Q	probably damaging	Het
Rcan2	T	A	17: 44,264,370 (GRCm39)	V10D	probably benign	Het
Slc10a5	A	G	3: 10,400,520 (GRCm39)	S47P	probably damaging	Het
Sprr3	A	G	3: 92,364,214 (GRCm39)	V210A	possibly damaging	Het
Tcerg1l	G	T	7: 137,999,361 (GRCm39)	Q8K	unknown	Het
Ubfd1	T	C	7: 121,670,977 (GRCm39)	V265A	possibly damaging	Het
Ubr1	T	C	2: 120,764,867 (GRCm39)	D529G	possibly damaging	Het
Vmn1r180	A	T	7: 23,652,298 (GRCm39)	I154F	probably damaging	Het
Vmn1r237	A	G	17: 21,534,925 (GRCm39)	H216R	possibly damaging	Het
Whrn	C	T	4: 63,351,210 (GRCm39)		probably benign	Het
Zfr	T	G	15: 12,149,745 (GRCm39)	D388E	probably damaging	Het
Zic5	T	C	14: 122,702,075 (GRCm39)	I219V	probably benign	Het
Zmat5	A	G	11: 4,678,614 (GRCm39)	N53D	probably benign	Het

Other mutations in Csnk1e

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0624:Csnk1e	UTSW	15	79,304,098 (GRCm39)	unclassified	probably benign
R1281:Csnk1e	UTSW	15	79,304,841 (GRCm39)	missense	possibly damaging	0.80
R1618:Csnk1e	UTSW	15	79,309,050 (GRCm39)	missense	probably benign	0.02
R3005:Csnk1e	UTSW	15	79,323,005 (GRCm39)	missense	probably benign	0.42
R4242:Csnk1e	UTSW	15	79,309,095 (GRCm39)	missense	probably damaging	1.00
R4276:Csnk1e	UTSW	15	79,313,967 (GRCm39)	missense	probably damaging	1.00
R4438:Csnk1e	UTSW	15	79,305,129 (GRCm39)	missense	probably benign	0.08
R4994:Csnk1e	UTSW	15	79,309,129 (GRCm39)	missense	probably damaging	1.00
R5071:Csnk1e	UTSW	15	79,305,072 (GRCm39)	nonsense	probably null
R7072:Csnk1e	UTSW	15	79,322,967 (GRCm39)	splice site	probably null
R7553:Csnk1e	UTSW	15	79,310,566 (GRCm39)	missense	probably damaging	1.00
R8379:Csnk1e	UTSW	15	79,304,882 (GRCm39)	missense	possibly damaging	0.88
R8721:Csnk1e	UTSW	15	79,314,015 (GRCm39)	missense	possibly damaging	0.94

Predicted Primers

PCR Primer
(F):5'- ATGCCCTGTCTATGCCAAGG -3'
(R):5'- GTACCTAGAATGGTAGTGGCTGC -3'

Sequencing Primer
(F):5'- GTGACGTCATTCACAGTGTCCAG -3'
(R):5'- CTGAGGCTGCCAGGAGAGTAAC -3'

Posted On

2015-06-12