Mutagenetix > Incidental Mutation

Incidental Mutation 'R0396:Zc3h13'

32079

Institutional Source

Beutler Lab

Gene Symbol

Zc3h13

Ensembl Gene

ENSMUSG00000022000

Gene Name

zinc finger CCCH type containing 13

Synonyms

4930570G11Rik, 3110050K21Rik, 2600010B19Rik, C87618

MMRRC Submission

038602-MU

Accession Numbers

Genbank: NM_026083

Essential gene?

Probably essential (E-score: 0.967) question?

Stock #

R0396 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

75284373-75344426 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 75323482 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 504 (D504G)

Ref Sequence

ENSEMBL: ENSMUSP00000153882 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022577] [ENSMUST00000227049]

AlphaFold

E9Q784

Predicted Effect

unknown
Transcript: ENSMUST00000022577
AA Change: D504G

SMART Domains

Protein: ENSMUSP00000022577
Gene: ENSMUSG00000022000
AA Change: D504G

Domain	Start	End	E-Value	Type
ZnF_C3H1	36	63	4.54e-4	SMART
low complexity region	136	145	N/A	INTRINSIC
coiled coil region	162	197	N/A	INTRINSIC
low complexity region	204	233	N/A	INTRINSIC
low complexity region	261	269	N/A	INTRINSIC
low complexity region	278	287	N/A	INTRINSIC
low complexity region	321	357	N/A	INTRINSIC
low complexity region	411	478	N/A	INTRINSIC
low complexity region	482	493	N/A	INTRINSIC
low complexity region	496	575	N/A	INTRINSIC
low complexity region	684	701	N/A	INTRINSIC
coiled coil region	706	865	N/A	INTRINSIC
low complexity region	907	918	N/A	INTRINSIC
internal_repeat_1	921	948	1.8e-6	PROSPERO
low complexity region	964	985	N/A	INTRINSIC
low complexity region	1032	1052	N/A	INTRINSIC
low complexity region	1071	1087	N/A	INTRINSIC
low complexity region	1160	1218	N/A	INTRINSIC
low complexity region	1253	1265	N/A	INTRINSIC
internal_repeat_1	1273	1301	1.8e-6	PROSPERO
low complexity region	1325	1349	N/A	INTRINSIC
low complexity region	1366	1391	N/A	INTRINSIC
low complexity region	1400	1425	N/A	INTRINSIC
low complexity region	1431	1442	N/A	INTRINSIC
low complexity region	1690	1697	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000226417

Predicted Effect

unknown
Transcript: ENSMUST00000227049
AA Change: D504G

Meta Mutation Damage Score

0.0760

Coding Region Coverage

1x: 99.0%
3x: 98.0%
10x: 95.5%
20x: 89.8%

Validation Efficiency

92% (96/104)

Allele List at MGI

All alleles(11) : Targeted, other(2) Gene trapped(9)

Other mutations in this stock

Total: 101 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610507B11Rik	T	C	11: 78,268,377 (GRCm38)	V467A	possibly damaging	Het
4933405L10Rik	G	A	8: 105,709,780 (GRCm38)	V194I	probably benign	Het
Acsm1	A	T	7: 119,636,455 (GRCm38)	I133F	probably damaging	Het
Adamts9	T	A	6: 92,798,005 (GRCm38)	T1676S	probably benign	Het
Adcy4	T	C	14: 55,772,288 (GRCm38)	D769G	probably benign	Het
Aif1	T	C	17: 35,171,109 (GRCm38)	*148W	probably null	Het
Akna	C	T	4: 63,392,126 (GRCm38)		probably benign	Het
Arhgap32	G	A	9: 32,245,255 (GRCm38)		probably null	Het
Atpaf1	G	A	4: 115,785,252 (GRCm38)	E92K	possibly damaging	Het
C1s1	T	C	6: 124,533,354 (GRCm38)	E378G	probably benign	Het
Caprin1	T	A	2: 103,769,569 (GRCm38)	Q108L	probably damaging	Het
Car13	A	T	3: 14,656,239 (GRCm38)	H154L	probably benign	Het
Cdon	C	A	9: 35,470,130 (GRCm38)	N605K	probably damaging	Het
Ceacam10	G	A	7: 24,781,014 (GRCm38)	G70E	probably damaging	Het
Cfap221	G	A	1: 119,954,200 (GRCm38)	T286M	probably benign	Het
Cfap61	T	C	2: 145,949,944 (GRCm38)	F107S	possibly damaging	Het
Coil	C	A	11: 88,981,623 (GRCm38)	T270N	probably benign	Het
Crocc2	T	G	1: 93,224,214 (GRCm38)		probably benign	Het
Crot	T	C	5: 8,969,959 (GRCm38)	E461G	probably damaging	Het
D130052B06Rik	G	T	11: 33,623,391 (GRCm38)	R41L	unknown	Het
D630045J12Rik	T	C	6: 38,196,736 (GRCm38)	S166G	possibly damaging	Het
Dennd4a	T	G	9: 64,862,391 (GRCm38)	V460G	probably damaging	Het
Depdc7	A	T	2: 104,727,323 (GRCm38)		probably benign	Het
Dgkb	G	A	12: 38,190,135 (GRCm38)		probably null	Het
Dhx57	T	G	17: 80,274,797 (GRCm38)	S407R	probably benign	Het
Dnase2a	G	T	8: 84,909,763 (GRCm38)		probably benign	Het
Dqx1	T	G	6: 83,059,005 (GRCm38)	M106R	probably benign	Het
Eno1b	T	C	18: 48,047,739 (GRCm38)	I328T	probably benign	Het
Ephx2	T	G	14: 66,108,063 (GRCm38)	I151L	probably benign	Het
Gdf3	C	T	6: 122,607,135 (GRCm38)	G91D	probably damaging	Het
Gm14124	G	A	2: 150,268,053 (GRCm38)	G221D	probably damaging	Het
Gpc5	T	A	14: 115,428,208 (GRCm38)	N481K	possibly damaging	Het
Gsdme	T	A	6: 50,221,107 (GRCm38)	H291L	probably benign	Het
H2-Bl	A	G	17: 36,083,722 (GRCm38)	I103T	possibly damaging	Het
Hif3a	G	A	7: 17,052,021 (GRCm38)		probably benign	Het
Hmox2	A	T	16: 4,765,763 (GRCm38)	I232L	probably benign	Het
Itgb2	A	G	10: 77,561,189 (GRCm38)	Y686C	probably damaging	Het
Jmjd1c	A	G	10: 67,219,523 (GRCm38)	T528A	possibly damaging	Het
Kdr	T	C	5: 75,960,728 (GRCm38)	I541V	possibly damaging	Het
Khdrbs2	C	A	1: 32,519,973 (GRCm38)	V343L	probably damaging	Het
Kif16b	C	T	2: 142,853,659 (GRCm38)	R175H	probably damaging	Het
Klri2	T	G	6: 129,740,288 (GRCm38)	E44A	possibly damaging	Het
Kmt2b	G	T	7: 30,576,755 (GRCm38)	T1773K	probably damaging	Het
Lair1	A	G	7: 4,010,786 (GRCm38)	L154P	probably damaging	Het
Larp1b	G	A	3: 40,970,561 (GRCm38)	V158M	probably damaging	Het
Lgi3	T	A	14: 70,534,840 (GRCm38)	I275N	probably damaging	Het
Lrba	A	G	3: 86,295,179 (GRCm38)	N246D	probably damaging	Het
Lrrc45	T	A	11: 120,714,907 (GRCm38)		probably benign	Het
Mdh2	G	T	5: 135,789,679 (GRCm38)	V263L	probably benign	Het
Myom1	T	A	17: 71,034,693 (GRCm38)	V149E	probably damaging	Het
Nanos1	A	T	19: 60,757,041 (GRCm38)	D259V	probably damaging	Het
Nedd4l	T	A	18: 65,161,654 (GRCm38)		probably benign	Het
Npas3	A	G	12: 53,831,745 (GRCm38)	Y150C	probably damaging	Het
Olfr1066	T	C	2: 86,456,019 (GRCm38)	N84S	possibly damaging	Het
Olfr1129	T	A	2: 87,575,567 (GRCm38)	V161D	possibly damaging	Het
Olfr1392	A	T	11: 49,293,338 (GRCm38)	I6F	probably benign	Het
Olfr479	A	T	7: 108,055,963 (GRCm38)	H327L	probably benign	Het
Olfr672	G	A	7: 104,996,706 (GRCm38)	A66V	probably damaging	Het
Olfr93	C	T	17: 37,151,555 (GRCm38)	C139Y	probably damaging	Het
Pde4c	A	G	8: 70,750,076 (GRCm38)	N637S	probably benign	Het
Pds5b	T	A	5: 150,779,275 (GRCm38)	V824D	possibly damaging	Het
Pole2	A	T	12: 69,222,386 (GRCm38)		probably benign	Het
Ppig	C	T	2: 69,735,976 (GRCm38)		probably benign	Het
Prep	A	G	10: 45,092,676 (GRCm38)	Y90C	probably damaging	Het
Proca1	A	T	11: 78,194,905 (GRCm38)	R11S	probably damaging	Het
Prph	T	A	15: 99,056,991 (GRCm38)	W313R	probably benign	Het
Prune2	C	T	19: 17,123,080 (GRCm38)	P1983S	probably benign	Het
Ptbp2	G	A	3: 119,724,198 (GRCm38)		probably benign	Het
Rsph6a	C	T	7: 19,074,106 (GRCm38)	P398L	probably damaging	Het
Sdk2	T	C	11: 113,829,967 (GRCm38)	I1379V	probably benign	Het
Sf3b1	C	T	1: 55,019,271 (GRCm38)	G53E	probably damaging	Het
Slc9a3	T	C	13: 74,157,784 (GRCm38)		probably null	Het
Smarcal1	A	T	1: 72,626,473 (GRCm38)	H710L	probably benign	Het
Soat2	GAGAAG	GAG	15: 102,150,707 (GRCm38)		probably benign	Het
Sptan1	T	C	2: 29,991,033 (GRCm38)	V438A	probably damaging	Het
Sstr4	T	A	2: 148,396,261 (GRCm38)	V264D	probably damaging	Het
Susd2	A	G	10: 75,639,911 (GRCm38)	L418P	probably damaging	Het
Synj1	A	G	16: 90,938,640 (GRCm38)	V1475A	probably benign	Het
Szt2	G	A	4: 118,376,347 (GRCm38)		probably benign	Het
Tbc1d4	T	C	14: 101,458,063 (GRCm38)		probably null	Het
Tesk1	A	G	4: 43,446,000 (GRCm38)	E311G	probably damaging	Het
Tmed5	A	T	5: 108,126,016 (GRCm38)	V119E	probably damaging	Het
Tmem260	T	C	14: 48,486,867 (GRCm38)	S201P	possibly damaging	Het
Tnxb	A	G	17: 34,671,733 (GRCm38)	Y350C	probably damaging	Het
Tpte	T	C	8: 22,335,608 (GRCm38)		probably benign	Het
Trim37	A	T	11: 87,146,968 (GRCm38)	D161V	probably damaging	Het
Trrap	C	A	5: 144,814,556 (GRCm38)	Q1640K	probably damaging	Het
Tspoap1	T	C	11: 87,776,346 (GRCm38)		probably benign	Het
Ttk	T	A	9: 83,847,260 (GRCm38)		probably benign	Het
Vmn1r172	A	G	7: 23,660,532 (GRCm38)	S281G	probably benign	Het
Vmn1r177	A	G	7: 23,865,597 (GRCm38)	S285P	probably damaging	Het
Vmn1r231	C	T	17: 20,890,399 (GRCm38)	V85I	probably damaging	Het
Vmn2r100	C	A	17: 19,522,120 (GRCm38)	P252Q	possibly damaging	Het
Vmn2r118	T	C	17: 55,608,643 (GRCm38)	I436V	probably benign	Het
Vmn2r12	T	C	5: 109,092,899 (GRCm38)	K116R	probably benign	Het
Vmn2r28	T	A	7: 5,488,514 (GRCm38)	I245L	probably benign	Het
Wdr26	A	T	1: 181,180,651 (GRCm38)		probably benign	Het
Xrcc3	A	T	12: 111,809,957 (GRCm38)	H67Q	probably benign	Het
Zbbx	A	T	3: 75,078,495 (GRCm38)	S417T	possibly damaging	Het
Zfp217	C	T	2: 170,115,462 (GRCm38)	A539T	probably benign	Het
Zyg11b	A	T	4: 108,255,308 (GRCm38)	F388I	probably damaging	Het

Other mutations in Zc3h13

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00945:Zc3h13	APN	14	75,330,147 (GRCm38)	missense	probably damaging	0.99
IGL01129:Zc3h13	APN	14	75,335,999 (GRCm38)	missense	probably damaging	1.00
IGL01599:Zc3h13	APN	14	75,309,723 (GRCm38)	missense	probably damaging	1.00
IGL01844:Zc3h13	APN	14	75,343,769 (GRCm38)	utr 3 prime	probably benign
IGL02132:Zc3h13	APN	14	75,330,347 (GRCm38)	missense	probably benign	0.10
IGL03108:Zc3h13	APN	14	75,331,766 (GRCm38)	missense	possibly damaging	0.73
IGL03299:Zc3h13	APN	14	75,293,941 (GRCm38)	missense	probably damaging	1.00
IGL03377:Zc3h13	APN	14	75,293,976 (GRCm38)	missense	possibly damaging	0.53
B5639:Zc3h13	UTSW	14	75,316,039 (GRCm38)	missense	probably damaging	1.00
FR4304:Zc3h13	UTSW	14	75,323,610 (GRCm38)	small insertion	probably benign
FR4304:Zc3h13	UTSW	14	75,323,603 (GRCm38)	small insertion	probably benign
FR4340:Zc3h13	UTSW	14	75,323,592 (GRCm38)	small insertion	probably benign
FR4449:Zc3h13	UTSW	14	75,323,601 (GRCm38)	nonsense	probably null
FR4548:Zc3h13	UTSW	14	75,323,599 (GRCm38)	small insertion	probably benign
FR4589:Zc3h13	UTSW	14	75,323,598 (GRCm38)	small insertion	probably benign
FR4589:Zc3h13	UTSW	14	75,323,592 (GRCm38)	small insertion	probably benign
FR4589:Zc3h13	UTSW	14	75,323,597 (GRCm38)	small insertion	probably benign
FR4737:Zc3h13	UTSW	14	75,323,599 (GRCm38)	small insertion	probably benign
FR4737:Zc3h13	UTSW	14	75,323,596 (GRCm38)	small insertion	probably benign
PIT4696001:Zc3h13	UTSW	14	75,331,883 (GRCm38)	missense	probably damaging	1.00
R0103:Zc3h13	UTSW	14	75,330,468 (GRCm38)	missense	probably damaging	0.98
R0103:Zc3h13	UTSW	14	75,330,468 (GRCm38)	missense	probably damaging	0.98
R0127:Zc3h13	UTSW	14	75,323,254 (GRCm38)	missense	unknown
R0374:Zc3h13	UTSW	14	75,308,965 (GRCm38)	missense	probably damaging	1.00
R0408:Zc3h13	UTSW	14	75,292,186 (GRCm38)	nonsense	probably null
R0967:Zc3h13	UTSW	14	75,343,739 (GRCm38)	missense	possibly damaging	0.54
R1006:Zc3h13	UTSW	14	75,330,549 (GRCm38)	missense	probably damaging	0.99
R1142:Zc3h13	UTSW	14	75,315,984 (GRCm38)	missense	probably benign	0.14
R1605:Zc3h13	UTSW	14	75,337,483 (GRCm38)	nonsense	probably null
R2021:Zc3h13	UTSW	14	75,330,195 (GRCm38)	missense	probably damaging	0.96
R2270:Zc3h13	UTSW	14	75,332,147 (GRCm38)	missense	probably benign	0.03
R3508:Zc3h13	UTSW	14	75,308,940 (GRCm38)	nonsense	probably null
R3745:Zc3h13	UTSW	14	75,330,661 (GRCm38)	missense	probably benign	0.03
R3954:Zc3h13	UTSW	14	75,329,738 (GRCm38)	missense	possibly damaging	0.85
R4205:Zc3h13	UTSW	14	75,327,601 (GRCm38)	missense	unknown
R4799:Zc3h13	UTSW	14	75,339,423 (GRCm38)	missense	probably damaging	1.00
R5042:Zc3h13	UTSW	14	75,339,396 (GRCm38)	missense	probably damaging	0.98
R5133:Zc3h13	UTSW	14	75,336,009 (GRCm38)	missense	probably damaging	1.00
R5384:Zc3h13	UTSW	14	75,343,619 (GRCm38)	missense	probably benign	0.14
R5432:Zc3h13	UTSW	14	75,331,247 (GRCm38)	missense	probably damaging	1.00
R5611:Zc3h13	UTSW	14	75,330,908 (GRCm38)	missense	probably benign	0.10
R5687:Zc3h13	UTSW	14	75,331,960 (GRCm38)	nonsense	probably null
R5726:Zc3h13	UTSW	14	75,330,829 (GRCm38)	missense	possibly damaging	0.84
R5817:Zc3h13	UTSW	14	75,328,132 (GRCm38)	missense	probably damaging	0.96
R6087:Zc3h13	UTSW	14	75,330,709 (GRCm38)	missense	probably damaging	0.96
R6224:Zc3h13	UTSW	14	75,337,409 (GRCm38)	missense	probably damaging	0.99
R6247:Zc3h13	UTSW	14	75,343,736 (GRCm38)	missense	probably benign	0.14
R6278:Zc3h13	UTSW	14	75,330,423 (GRCm38)	missense	probably benign	0.01
R6315:Zc3h13	UTSW	14	75,308,915 (GRCm38)	missense	probably damaging	1.00
R6490:Zc3h13	UTSW	14	75,323,558 (GRCm38)	small deletion	probably benign
R6598:Zc3h13	UTSW	14	75,332,183 (GRCm38)	missense	probably damaging	0.99
R7051:Zc3h13	UTSW	14	75,331,157 (GRCm38)	missense	probably damaging	1.00
R7054:Zc3h13	UTSW	14	75,321,787 (GRCm38)	missense	probably benign	0.19
R7135:Zc3h13	UTSW	14	75,321,721 (GRCm38)	missense	unknown
R7307:Zc3h13	UTSW	14	75,330,541 (GRCm38)	missense	probably damaging	0.96
R7515:Zc3h13	UTSW	14	75,308,909 (GRCm38)	missense	unknown
R7680:Zc3h13	UTSW	14	75,330,515 (GRCm38)	missense	probably damaging	0.99
R8031:Zc3h13	UTSW	14	75,330,630 (GRCm38)	missense	not run
R8048:Zc3h13	UTSW	14	75,324,537 (GRCm38)	missense	unknown
R8059:Zc3h13	UTSW	14	75,327,810 (GRCm38)	missense	unknown
R8362:Zc3h13	UTSW	14	75,324,469 (GRCm38)	missense	unknown
R8391:Zc3h13	UTSW	14	75,331,185 (GRCm38)	missense	probably damaging	1.00
R8724:Zc3h13	UTSW	14	75,332,072 (GRCm38)	missense	probably benign	0.05
R9081:Zc3h13	UTSW	14	75,331,941 (GRCm38)	small deletion	probably benign
R9082:Zc3h13	UTSW	14	75,331,941 (GRCm38)	small deletion	probably benign
R9101:Zc3h13	UTSW	14	75,323,602 (GRCm38)	missense	unknown
R9214:Zc3h13	UTSW	14	75,323,551 (GRCm38)	missense	unknown
R9308:Zc3h13	UTSW	14	75,327,978 (GRCm38)	missense	unknown
R9376:Zc3h13	UTSW	14	75,323,688 (GRCm38)	missense	unknown
R9618:Zc3h13	UTSW	14	75,330,102 (GRCm38)	missense
R9665:Zc3h13	UTSW	14	75,330,549 (GRCm38)	missense	probably damaging	0.99
Z1177:Zc3h13	UTSW	14	75,328,065 (GRCm38)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- GCGAGAGTCTGAACATGACCACAG -3'
(R):5'- TTTCGATGACCATCCCGAACATCC -3'

Sequencing Primer
(F):5'- TCTGAACATGACCACAGGGATG -3'
(R):5'- tcccgaacatcccggac -3'

Posted On

2013-04-24