Mutagenetix > Incidental Mutations

Incidental Mutation 'R4231:Skint11'

320833

Institutional Source

Beutler Lab

Gene Symbol

Skint11

Ensembl Gene

ENSMUSG00000057977

Gene Name

selection and upkeep of intraepithelial T cells 11

Synonyms

A630098G03Rik

MMRRC Submission

041050-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.076) question?

Stock #

R4231 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

114163384-114245028 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 114244659 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Lysine at position 99 (Q99K)

Ref Sequence

ENSEMBL: ENSMUSP00000078836 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000079915] [ENSMUST00000164297]

AlphaFold

A7XV14

Predicted Effect

probably benign
Transcript: ENSMUST00000079915
AA Change: Q99K

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000078836
Gene: ENSMUSG00000057977
AA Change: Q99K

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
transmembrane domain	37	59	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000164297
AA Change: Q290K

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000127138
Gene: ENSMUSG00000057977
AA Change: Q290K

Domain	Start	End	E-Value	Type
PDB:4F8T\|A	19	125	6e-9	PDB
Blast:IG_like	40	119	1e-10	BLAST
transmembrane domain	138	160	N/A	INTRINSIC
transmembrane domain	187	209	N/A	INTRINSIC
transmembrane domain	224	246	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 95.2%

Validation Efficiency

99% (75/76)

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930567H17Rik	C	T	X: 70,394,529	A53T	probably benign	Het
4932438A13Rik	C	T	3: 36,920,236	T663I	probably benign	Het
Ajuba	T	C	14: 54,569,526	R490G	probably damaging	Het
Akap6	A	T	12: 53,141,038	D1745V	probably damaging	Het
Aldh5a1	C	T	13: 24,911,653	G494R	probably damaging	Het
Ankar	T	C	1: 72,658,542	D1034G	probably benign	Het
Aox3	T	A	1: 58,114,885	N23K	probably benign	Het
Arhgef18	T	C	8: 3,450,317	I541T	possibly damaging	Het
Atg14	T	C	14: 47,551,345	K184E	probably benign	Het
Cacnb2	A	G	2: 14,981,440	K343E	probably damaging	Het
Casp8	T	C	1: 58,844,770	V432A	probably damaging	Het
Cd93	A	T	2: 148,442,960	H155Q	probably benign	Het
Cox6b2	T	C	7: 4,752,835	M1V	probably null	Het
Crat	T	C	2: 30,413,011	E88G	possibly damaging	Het
Ddx1	C	T	12: 13,223,857	V590I	possibly damaging	Het
Dip2a	G	A	10: 76,319,470	P94S	probably damaging	Het
Dtx3	A	G	10: 127,193,189	I60T	possibly damaging	Het
Fam196b	A	T	11: 34,403,143	E395V	probably benign	Het
Filip1l	T	C	16: 57,506,768	S54P	probably benign	Het
Gm12887	A	T	4: 121,622,102	M1K	probably null	Het
Gm26678	T	C	3: 54,633,083		noncoding transcript	Het
Impg1	A	G	9: 80,345,329	L523P	probably damaging	Het
Ip6k2	G	A	9: 108,805,648	R319Q	probably benign	Het
Irak2	A	G	6: 113,690,856	E466G	probably damaging	Het
Irgm2	C	T	11: 58,219,478		probably benign	Het
Jak3	T	A	8: 71,685,545	V880D	probably damaging	Het
Jmy	G	T	13: 93,498,925	P128T	probably benign	Het
Kif20a	A	G	18: 34,632,038	N775S	probably benign	Het
Kremen1	G	A	11: 5,243,881	Q50*	probably null	Het
Lrrc71	A	G	3: 87,740,991	I438T	probably benign	Het
Map3k1	T	C	13: 111,768,494	T374A	probably benign	Het
Med12l	T	G	3: 59,257,223		probably null	Het
Mrps30	T	C	13: 118,386,840	D132G	probably damaging	Het
Mta1	T	C	12: 113,135,827	M603T	possibly damaging	Het
Myo5a	A	G	9: 75,189,997	N1319S	possibly damaging	Het
Nalcn	T	A	14: 123,599,913	Q13L	probably benign	Het
Nbas	A	G	12: 13,393,343	N1133S	probably damaging	Het
Nsun2	A	G	13: 69,619,541	N205D	probably damaging	Het
Nxpe4	A	T	9: 48,398,837	T467S	probably damaging	Het
Olfr1293-ps	C	T	2: 111,528,201	R314C	probably damaging	Het
Olfr53	T	C	7: 140,652,740	Y254H	probably damaging	Het
Olfr849	T	A	9: 19,441,590	L226I	probably damaging	Het
Pam	A	G	1: 97,884,124		probably null	Het
Pcdh7	G	A	5: 57,719,289	G62D	possibly damaging	Het
Plxna2	C	T	1: 194,644,454	T232I	probably damaging	Het
Prkar1b	A	G	5: 139,108,621	S71P	probably benign	Het
Ptprq	A	T	10: 107,686,283	Y602*	probably null	Het
Rfx4	A	T	10: 84,814,694	M84L	probably benign	Het
Rfx7	A	T	9: 72,619,390	E1287D	possibly damaging	Het
Rin2	C	T	2: 145,860,446	T354I	probably benign	Het
Rnf216	A	T	5: 143,093,090	S35T	probably damaging	Het
Rps6kc1	A	G	1: 190,808,900	V402A	probably damaging	Het
Rufy4	T	C	1: 74,147,663	C537R	probably damaging	Het
Sart3	A	G	5: 113,771,418	M73T	probably benign	Het
Scn10a	G	T	9: 119,631,544	T1088K	probably damaging	Het
Senp2	T	C	16: 22,011,554		probably null	Het
Setd7	T	C	3: 51,542,730	N92D	probably benign	Het
Sipa1	A	T	19: 5,654,089	L735Q	probably damaging	Het
Slitrk6	A	T	14: 110,751,388	S296T	probably benign	Het
Spc24	T	C	9: 21,756,202		probably null	Het
Tex15	T	C	8: 33,572,137	S806P	probably damaging	Het
Tgm3	A	T	2: 130,044,589	K577*	probably null	Het
Wscd2	A	G	5: 113,560,984	D200G	probably benign	Het
Xpo6	T	C	7: 126,174,182	T24A	possibly damaging	Het
Zfhx2	A	G	14: 55,073,534	C568R	possibly damaging	Het
Zfp599	T	A	9: 22,249,745	K375*	probably null	Het

Other mutations in Skint11

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00500:Skint11	APN	4	114194709	missense	probably benign	0.03
IGL00775:Skint11	APN	4	114194692	missense	probably damaging	1.00
IGL02186:Skint11	APN	4	114244636	missense	possibly damaging	0.82
IGL02499:Skint11	APN	4	114194604	missense	probably benign	0.01
IGL02622:Skint11	APN	4	114194728	missense	probably damaging	1.00
IGL03115:Skint11	APN	4	114244623	missense	probably damaging	0.99
R0513:Skint11	UTSW	4	114194565	missense	probably benign	0.00
R0928:Skint11	UTSW	4	114244601	missense	possibly damaging	0.95
R1486:Skint11	UTSW	4	114194818	critical splice donor site	probably null
R1508:Skint11	UTSW	4	114231766	critical splice donor site	probably null
R1667:Skint11	UTSW	4	114194781	missense	probably damaging	0.99
R1807:Skint11	UTSW	4	114194696	missense	probably benign	0.08
R2504:Skint11	UTSW	4	114228812	missense	possibly damaging	0.55
R4165:Skint11	UTSW	4	114244659	missense	probably benign	0.00
R4166:Skint11	UTSW	4	114244659	missense	probably benign	0.00
R4233:Skint11	UTSW	4	114244659	missense	probably benign	0.00
R4234:Skint11	UTSW	4	114244659	missense	probably benign	0.00
R4236:Skint11	UTSW	4	114244659	missense	probably benign	0.00
R4756:Skint11	UTSW	4	114194677	missense	probably benign	0.30
R4947:Skint11	UTSW	4	114191510	missense	possibly damaging	0.89
R5237:Skint11	UTSW	4	114244845	missense	possibly damaging	0.66
R5538:Skint11	UTSW	4	114231762	missense	probably damaging	0.99
R5555:Skint11	UTSW	4	114194601	missense	probably benign	0.03
R6004:Skint11	UTSW	4	114231728	missense	probably benign	0.37
R6209:Skint11	UTSW	4	114244710	missense	possibly damaging	0.73
R7121:Skint11	UTSW	4	114227796	missense	probably benign	0.05
R7208:Skint11	UTSW	4	114231747	missense	probably damaging	1.00
R7348:Skint11	UTSW	4	114244722	missense	probably benign	0.15
R7763:Skint11	UTSW	4	114227708	missense	probably benign	0.00
R7842:Skint11	UTSW	4	114244771	missense	possibly damaging	0.83
R7846:Skint11	UTSW	4	114244879	missense	possibly damaging	0.92
R8054:Skint11	UTSW	4	114244609	missense	possibly damaging	0.55
R8710:Skint11	UTSW	4	114194754	missense	probably benign	0.10
R8742:Skint11	UTSW	4	114194725	missense	probably damaging	0.98
Z1176:Skint11	UTSW	4	114194772	missense	probably damaging	1.00
Z1176:Skint11	UTSW	4	114231681	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- TGTGAACAACAAGTTGCAGTG -3'
(R):5'- TGTCAAGTTTCCAAGTTTCGAGTAC -3'

Sequencing Primer
(F):5'- CAACAAGTTGCAGTGAGAGTGTGTG -3'
(R):5'- AGTTTCCAAGTTTCGAGTACAATTC -3'

Posted On

2015-06-12