Incidental Mutation 'R4231:Kif20a'
ID 320883
Institutional Source Beutler Lab
Gene Symbol Kif20a
Ensembl Gene ENSMUSG00000003779
Gene Name kinesin family member 20A
Synonyms Rabkinesin-6, Rab6kifl
MMRRC Submission 041050-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R4231 (G1)
Quality Score 225
Status Validated
Chromosome 18
Chromosomal Location 34757677-34766330 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 34765091 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Serine at position 775 (N775S)
Ref Sequence ENSEMBL: ENSMUSP00000130045 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000025228] [ENSMUST00000133181] [ENSMUST00000166044] [ENSMUST00000167161]
AlphaFold P97329
Predicted Effect probably benign
Transcript: ENSMUST00000025228
SMART Domains Protein: ENSMUSP00000025228
Gene: ENSMUSG00000024370

DomainStartEndE-ValueType
Pfam:APC8 22 152 1.9e-42 PFAM
Blast:TPR 175 202 4e-10 BLAST
TPR 263 296 4.21e1 SMART
TPR 331 364 1.74e-4 SMART
TPR 365 398 1.83e-3 SMART
TPR 399 432 1.37e-2 SMART
TPR 433 466 8.97e0 SMART
TPR 510 543 1.82e1 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000133162
Predicted Effect probably benign
Transcript: ENSMUST00000133181
SMART Domains Protein: ENSMUSP00000122420
Gene: ENSMUSG00000024370

DomainStartEndE-ValueType
low complexity region 2 24 N/A INTRINSIC
Pfam:ANAPC8 28 151 6.9e-31 PFAM
Blast:TPR 175 202 4e-10 BLAST
TPR 263 296 4.21e1 SMART
TPR 331 364 1.74e-4 SMART
TPR 365 398 1.83e-3 SMART
TPR 399 432 1.37e-2 SMART
TPR 433 466 8.97e0 SMART
TPR 510 543 1.82e1 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000136949
Predicted Effect noncoding transcript
Transcript: ENSMUST00000138400
Predicted Effect probably benign
Transcript: ENSMUST00000166044
AA Change: N775S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000132659
Gene: ENSMUSG00000003779
AA Change: N775S

DomainStartEndE-ValueType
KISc 61 514 3.95e-141 SMART
coiled coil region 559 760 N/A INTRINSIC
low complexity region 831 842 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000167161
AA Change: N775S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000130045
Gene: ENSMUSG00000003779
AA Change: N775S

DomainStartEndE-ValueType
KISc 61 514 3.95e-141 SMART
coiled coil region 559 760 N/A INTRINSIC
low complexity region 831 842 N/A INTRINSIC
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.2%
  • 20x: 95.2%
Validation Efficiency 99% (75/76)
Allele List at MGI
Other mutations in this stock
Total: 66 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930567H17Rik C T X: 69,438,135 (GRCm39) A53T probably benign Het
Ajuba T C 14: 54,806,983 (GRCm39) R490G probably damaging Het
Akap6 A T 12: 53,187,821 (GRCm39) D1745V probably damaging Het
Aldh5a1 C T 13: 25,095,636 (GRCm39) G494R probably damaging Het
Ankar T C 1: 72,697,701 (GRCm39) D1034G probably benign Het
Aox3 T A 1: 58,154,044 (GRCm39) N23K probably benign Het
Arhgef18 T C 8: 3,500,317 (GRCm39) I541T possibly damaging Het
Atg14 T C 14: 47,788,802 (GRCm39) K184E probably benign Het
Bltp1 C T 3: 36,974,385 (GRCm39) T663I probably benign Het
Cacnb2 A G 2: 14,986,251 (GRCm39) K343E probably damaging Het
Casp8 T C 1: 58,883,929 (GRCm39) V432A probably damaging Het
Cd93 A T 2: 148,284,880 (GRCm39) H155Q probably benign Het
Cox6b2 T C 7: 4,755,834 (GRCm39) M1V probably null Het
Crat T C 2: 30,303,023 (GRCm39) E88G possibly damaging Het
Ddx1 C T 12: 13,273,858 (GRCm39) V590I possibly damaging Het
Dip2a G A 10: 76,155,304 (GRCm39) P94S probably damaging Het
Dtx3 A G 10: 127,029,058 (GRCm39) I60T possibly damaging Het
Filip1l T C 16: 57,327,131 (GRCm39) S54P probably benign Het
Gm12887 A T 4: 121,479,299 (GRCm39) M1K probably null Het
Gm26678 T C 3: 54,540,504 (GRCm39) noncoding transcript Het
Impg1 A G 9: 80,252,611 (GRCm39) L523P probably damaging Het
Insyn2b A T 11: 34,353,143 (GRCm39) E395V probably benign Het
Ip6k2 G A 9: 108,682,847 (GRCm39) R319Q probably benign Het
Irak2 A G 6: 113,667,817 (GRCm39) E466G probably damaging Het
Irgm2 C T 11: 58,110,304 (GRCm39) probably benign Het
Jak3 T A 8: 72,138,189 (GRCm39) V880D probably damaging Het
Jmy G T 13: 93,635,433 (GRCm39) P128T probably benign Het
Kremen1 G A 11: 5,193,881 (GRCm39) Q50* probably null Het
Lrrc71 A G 3: 87,648,298 (GRCm39) I438T probably benign Het
Map3k1 T C 13: 111,905,028 (GRCm39) T374A probably benign Het
Med12l T G 3: 59,164,644 (GRCm39) probably null Het
Mrps30 T C 13: 118,523,376 (GRCm39) D132G probably damaging Het
Mta1 T C 12: 113,099,447 (GRCm39) M603T possibly damaging Het
Myo5a A G 9: 75,097,279 (GRCm39) N1319S possibly damaging Het
Nalcn T A 14: 123,837,325 (GRCm39) Q13L probably benign Het
Nbas A G 12: 13,443,344 (GRCm39) N1133S probably damaging Het
Nsun2 A G 13: 69,767,660 (GRCm39) N205D probably damaging Het
Nxpe4 A T 9: 48,310,137 (GRCm39) T467S probably damaging Het
Or13a20 T C 7: 140,232,653 (GRCm39) Y254H probably damaging Het
Or4f17-ps1 C T 2: 111,358,546 (GRCm39) R314C probably damaging Het
Or7g30 T A 9: 19,352,886 (GRCm39) L226I probably damaging Het
Pam A G 1: 97,811,849 (GRCm39) probably null Het
Pcdh7 G A 5: 57,876,631 (GRCm39) G62D possibly damaging Het
Plxna2 C T 1: 194,326,762 (GRCm39) T232I probably damaging Het
Prkar1b A G 5: 139,094,376 (GRCm39) S71P probably benign Het
Ptprq A T 10: 107,522,144 (GRCm39) Y602* probably null Het
Rfx4 A T 10: 84,650,558 (GRCm39) M84L probably benign Het
Rfx7 A T 9: 72,526,672 (GRCm39) E1287D possibly damaging Het
Rin2 C T 2: 145,702,366 (GRCm39) T354I probably benign Het
Rnf216 A T 5: 143,078,845 (GRCm39) S35T probably damaging Het
Rps6kc1 A G 1: 190,541,097 (GRCm39) V402A probably damaging Het
Rufy4 T C 1: 74,186,822 (GRCm39) C537R probably damaging Het
Sart3 A G 5: 113,909,479 (GRCm39) M73T probably benign Het
Scn10a G T 9: 119,460,610 (GRCm39) T1088K probably damaging Het
Senp2 T C 16: 21,830,304 (GRCm39) probably null Het
Setd7 T C 3: 51,450,151 (GRCm39) N92D probably benign Het
Sipa1 A T 19: 5,704,117 (GRCm39) L735Q probably damaging Het
Skint11 C A 4: 114,101,856 (GRCm39) Q99K probably benign Het
Slitrk6 A T 14: 110,988,820 (GRCm39) S296T probably benign Het
Spc24 T C 9: 21,667,498 (GRCm39) probably null Het
Tex15 T C 8: 34,062,165 (GRCm39) S806P probably damaging Het
Tgm3 A T 2: 129,886,509 (GRCm39) K577* probably null Het
Wscd2 A G 5: 113,699,045 (GRCm39) D200G probably benign Het
Xpo6 T C 7: 125,773,354 (GRCm39) T24A possibly damaging Het
Zfhx2 A G 14: 55,310,991 (GRCm39) C568R possibly damaging Het
Zfp599 T A 9: 22,161,041 (GRCm39) K375* probably null Het
Other mutations in Kif20a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02448:Kif20a APN 18 34,761,507 (GRCm39) missense possibly damaging 0.49
IGL02654:Kif20a APN 18 34,765,076 (GRCm39) missense probably damaging 1.00
IGL02739:Kif20a APN 18 34,761,996 (GRCm39) nonsense probably null
R0600:Kif20a UTSW 18 34,762,262 (GRCm39) missense probably damaging 1.00
R0748:Kif20a UTSW 18 34,761,241 (GRCm39) splice site probably benign
R0856:Kif20a UTSW 18 34,764,271 (GRCm39) missense probably benign
R1278:Kif20a UTSW 18 34,759,830 (GRCm39) missense probably benign 0.00
R1752:Kif20a UTSW 18 34,764,634 (GRCm39) missense possibly damaging 0.82
R2036:Kif20a UTSW 18 34,761,515 (GRCm39) missense possibly damaging 0.91
R2143:Kif20a UTSW 18 34,758,657 (GRCm39) missense possibly damaging 0.55
R2144:Kif20a UTSW 18 34,758,657 (GRCm39) missense possibly damaging 0.55
R4372:Kif20a UTSW 18 34,762,531 (GRCm39) missense probably damaging 1.00
R4426:Kif20a UTSW 18 34,764,994 (GRCm39) missense probably damaging 1.00
R4584:Kif20a UTSW 18 34,765,664 (GRCm39) missense probably damaging 1.00
R5524:Kif20a UTSW 18 34,763,678 (GRCm39) critical splice donor site probably null
R5867:Kif20a UTSW 18 34,765,468 (GRCm39) missense probably benign 0.01
R5869:Kif20a UTSW 18 34,765,468 (GRCm39) missense probably benign 0.01
R5949:Kif20a UTSW 18 34,765,468 (GRCm39) missense probably benign 0.01
R5958:Kif20a UTSW 18 34,765,468 (GRCm39) missense probably benign 0.01
R5959:Kif20a UTSW 18 34,765,468 (GRCm39) missense probably benign 0.01
R5967:Kif20a UTSW 18 34,763,580 (GRCm39) missense probably benign 0.10
R5969:Kif20a UTSW 18 34,765,468 (GRCm39) missense probably benign 0.01
R6175:Kif20a UTSW 18 34,761,199 (GRCm39) missense probably damaging 0.98
R6490:Kif20a UTSW 18 34,762,543 (GRCm39) missense possibly damaging 0.84
R6694:Kif20a UTSW 18 34,758,579 (GRCm39) missense probably damaging 0.98
R6866:Kif20a UTSW 18 34,761,546 (GRCm39) missense probably benign 0.10
R7129:Kif20a UTSW 18 34,765,588 (GRCm39) missense probably benign 0.00
R7217:Kif20a UTSW 18 34,762,613 (GRCm39) missense probably benign 0.14
R7397:Kif20a UTSW 18 34,760,729 (GRCm39) missense probably damaging 1.00
R7585:Kif20a UTSW 18 34,758,591 (GRCm39) missense probably benign 0.03
R8302:Kif20a UTSW 18 34,765,030 (GRCm39) missense probably damaging 1.00
R8306:Kif20a UTSW 18 34,761,444 (GRCm39) missense probably benign 0.00
R8325:Kif20a UTSW 18 34,759,975 (GRCm39) missense possibly damaging 0.68
R8697:Kif20a UTSW 18 34,761,584 (GRCm39) missense probably benign 0.19
R9022:Kif20a UTSW 18 34,760,898 (GRCm39) missense probably benign 0.00
R9331:Kif20a UTSW 18 34,762,562 (GRCm39) nonsense probably null
R9345:Kif20a UTSW 18 34,759,779 (GRCm39) missense probably benign 0.00
R9716:Kif20a UTSW 18 34,762,228 (GRCm39) missense possibly damaging 0.66
X0027:Kif20a UTSW 18 34,758,583 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- AAGTCTGTCTTCAAATGGCTGTTG -3'
(R):5'- TATTCTGCAGCTCAGCCAG -3'

Sequencing Primer
(F):5'- CTGTTGATTGATTTTGGCCACAATC -3'
(R):5'- CCAGGGTCTGGTTCTAAGAAC -3'
Posted On 2015-06-12