Mutagenetix > Incidental Mutation

Incidental Mutation 'R4273:Slc35f4'

322292

Institutional Source

Beutler Lab

Gene Symbol

Slc35f4

Ensembl Gene

ENSMUSG00000021852

Gene Name

solute carrier family 35, member F4

Synonyms

4930550L21Rik

MMRRC Submission

041645-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.125) question?

Stock #

R4273 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

49535976-49763354 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 49541758 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Asparagine at position 182 (T182N)

Ref Sequence

ENSEMBL: ENSMUSP00000119007 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000074368] [ENSMUST00000138884]

AlphaFold

Q8BZK4

Predicted Effect

probably benign
Transcript: ENSMUST00000074368
AA Change: T332N

PolyPhen 2 Score 0.252 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000073972
Gene: ENSMUSG00000021852
AA Change: T332N

Domain	Start	End	E-Value	Type
low complexity region	22	30	N/A	INTRINSIC
transmembrane domain	123	145	N/A	INTRINSIC
transmembrane domain	160	182	N/A	INTRINSIC
Pfam:SLC35F	216	435	7.6e-8	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135254

Predicted Effect

possibly damaging
Transcript: ENSMUST00000138884
AA Change: T182N

PolyPhen 2 Score 0.810 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000119007
Gene: ENSMUSG00000021852
AA Change: T182N

Domain	Start	End	E-Value	Type
Pfam:EmrE	18	143	1e-12	PFAM
Pfam:EamA	57	135	8.4e-9	PFAM
Pfam:DUF914	68	314	4.8e-8	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000228016

Coding Region Coverage

1x: 99.4%
3x: 98.8%
10x: 97.7%
20x: 96.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acer2	T	A	4: 86,792,835 (GRCm39)		probably null	Het
Adgrf2	T	A	17: 43,021,013 (GRCm39)	T604S	probably damaging	Het
Akap8l	T	A	17: 32,540,905 (GRCm39)	K533*	probably null	Het
Appbp2	T	C	11: 85,125,502 (GRCm39)	Y45C	probably damaging	Het
Arap2	T	C	5: 62,828,322 (GRCm39)	I950V	possibly damaging	Het
Arhgap31	T	C	16: 38,422,697 (GRCm39)	E1123G	possibly damaging	Het
Atp2c1	G	T	9: 105,312,339 (GRCm39)	N493K	probably benign	Het
Bcr	T	C	10: 74,960,943 (GRCm39)	I458T	probably damaging	Het
Brd4	G	A	17: 32,433,756 (GRCm39)	T468I	probably benign	Het
Cdh23	T	A	10: 60,146,940 (GRCm39)	D2774V	possibly damaging	Het
Cfdp1	T	C	8: 112,495,417 (GRCm39)	Y267C	probably damaging	Het
Chd6	C	A	2: 160,803,211 (GRCm39)	A2156S	probably benign	Het
Dazap2	C	A	15: 100,515,971 (GRCm39)	P100T	probably damaging	Het
Disp1	T	A	1: 182,869,208 (GRCm39)	I1071F	possibly damaging	Het
Dlgap1	T	A	17: 71,073,038 (GRCm39)	S686T	probably benign	Het
Dst	C	T	1: 34,231,421 (GRCm39)	R3183C	possibly damaging	Het
Enpp4	T	C	17: 44,412,698 (GRCm39)	N279D	probably benign	Het
Exoc3l	T	C	8: 106,016,593 (GRCm39)	*740W	probably null	Het
Exoc5	A	T	14: 49,252,937 (GRCm39)	C625*	probably null	Het
Fam98b	A	T	2: 117,090,712 (GRCm39)	N137Y	possibly damaging	Het
Fat4	T	A	3: 38,945,776 (GRCm39)	D1556E	probably damaging	Het
Fcer2a	C	A	8: 3,732,848 (GRCm39)	V319L	possibly damaging	Het
Fer1l6	T	C	15: 58,499,371 (GRCm39)	V1247A	probably benign	Het
Fmo4	A	G	1: 162,632,748 (GRCm39)	V201A	probably damaging	Het
Fras1	G	A	5: 96,762,763 (GRCm39)	G755D	probably benign	Het
Grid2	T	C	6: 63,886,029 (GRCm39)	Y142H	probably damaging	Het
Hspg2	C	T	4: 137,246,251 (GRCm39)	R1010C	probably damaging	Het
Ibtk	T	C	9: 85,608,784 (GRCm39)	Q376R	probably damaging	Het
Impdh2	T	C	9: 108,442,155 (GRCm39)	M414T	probably damaging	Het
Itm2c	A	G	1: 85,834,750 (GRCm39)	T160A	probably damaging	Het
Kcna2	T	A	3: 107,012,509 (GRCm39)	D363E	probably benign	Het
Lama2	C	T	10: 27,223,050 (GRCm39)	C412Y	probably damaging	Het
Lims2	C	G	18: 32,089,390 (GRCm39)	T151S	probably benign	Het
Mier1	T	C	4: 103,019,628 (GRCm39)	S423P	possibly damaging	Het
Mrgpra3	A	T	7: 47,239,180 (GRCm39)	W249R	probably benign	Het
Mtor	A	G	4: 148,634,609 (GRCm39)	H2410R	probably benign	Het
Mvp	C	T	7: 126,588,875 (GRCm39)	A631T	probably benign	Het
Nepro	T	C	16: 44,556,192 (GRCm39)	V450A	possibly damaging	Het
Ngrn	T	C	7: 79,914,269 (GRCm39)	V140A	probably damaging	Het
Nobox	T	C	6: 43,282,942 (GRCm39)	E231G	probably benign	Het
Or10al7	A	T	17: 38,366,163 (GRCm39)	I98N	probably damaging	Het
P3h2	T	A	16: 25,923,971 (GRCm39)	I155F	probably benign	Het
Pcdha3	C	T	18: 37,081,144 (GRCm39)	R629C	probably damaging	Het
Pramel24	A	T	4: 143,453,416 (GRCm39)	K175*	probably null	Het
Riok3	AGAAGCGG	AG	18: 12,268,998 (GRCm39)		probably benign	Het
Rttn	T	C	18: 89,110,020 (GRCm39)	I1675T	probably benign	Het
Sall2	C	A	14: 52,551,260 (GRCm39)	R643L	probably damaging	Het
Slc52a3	T	A	2: 151,847,660 (GRCm39)	I256N	possibly damaging	Het
Sox9	T	C	11: 112,675,980 (GRCm39)	S390P	possibly damaging	Het
Tango2	T	C	16: 18,120,654 (GRCm39)		probably benign	Het
Tas1r1	T	C	4: 152,116,614 (GRCm39)	E340G	possibly damaging	Het
Tek	G	A	4: 94,718,207 (GRCm39)	G524R	probably damaging	Het
Tmem260	A	T	14: 48,742,761 (GRCm39)	Y532F	probably benign	Het
Tsks	C	A	7: 44,607,353 (GRCm39)	L559I	probably damaging	Het
Unc79	C	A	12: 103,088,612 (GRCm39)	L1702I	probably damaging	Het
Vmn1r14	T	A	6: 57,211,133 (GRCm39)	I237N	probably damaging	Het
Vmn2r17	G	A	5: 109,600,832 (GRCm39)	C710Y	probably benign	Het
Zfp119b	G	T	17: 56,245,926 (GRCm39)	T420K	possibly damaging	Het
Zfp202	C	T	9: 40,118,790 (GRCm39)	R68*	probably null	Het
Zfp229	T	A	17: 21,965,802 (GRCm39)	S677R	probably benign	Het
Zfp462	C	T	4: 55,008,411 (GRCm39)	H126Y	probably benign	Het
Zfp52	C	A	17: 21,780,459 (GRCm39)	Y102*	probably null	Het
Zfp616	T	A	11: 73,974,526 (GRCm39)	M265K	probably benign	Het
Zfyve9	A	T	4: 108,538,173 (GRCm39)	I1031N	probably damaging	Het
Zmynd11	T	C	13: 9,747,726 (GRCm39)	Y203C	probably damaging	Het

Other mutations in Slc35f4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01511:Slc35f4	APN	14	49,536,334 (GRCm39)	missense	probably benign	0.15
IGL01640:Slc35f4	APN	14	49,556,225 (GRCm39)	missense	probably damaging	0.99
IGL01942:Slc35f4	APN	14	49,762,962 (GRCm39)	splice site	probably benign
IGL01990:Slc35f4	APN	14	49,541,626 (GRCm39)	critical splice donor site	probably null
IGL02097:Slc35f4	APN	14	49,543,703 (GRCm39)	missense	probably damaging	1.00
IGL02803:Slc35f4	APN	14	49,541,714 (GRCm39)	missense	probably benign	0.00
R0005:Slc35f4	UTSW	14	49,559,943 (GRCm39)	splice site	probably benign
R0238:Slc35f4	UTSW	14	49,541,713 (GRCm39)	missense	possibly damaging	0.78
R0238:Slc35f4	UTSW	14	49,541,713 (GRCm39)	missense	possibly damaging	0.78
R0239:Slc35f4	UTSW	14	49,541,713 (GRCm39)	missense	possibly damaging	0.78
R0239:Slc35f4	UTSW	14	49,541,713 (GRCm39)	missense	possibly damaging	0.78
R0764:Slc35f4	UTSW	14	49,543,796 (GRCm39)	splice site	probably benign
R1884:Slc35f4	UTSW	14	49,551,091 (GRCm39)	missense	probably damaging	1.00
R1916:Slc35f4	UTSW	14	49,541,380 (GRCm39)	intron	probably benign
R2047:Slc35f4	UTSW	14	49,541,029 (GRCm39)	intron	probably benign
R2239:Slc35f4	UTSW	14	49,543,660 (GRCm39)	critical splice donor site	probably null
R2380:Slc35f4	UTSW	14	49,543,660 (GRCm39)	critical splice donor site	probably null
R4420:Slc35f4	UTSW	14	49,551,034 (GRCm39)	unclassified	probably benign
R4425:Slc35f4	UTSW	14	49,556,307 (GRCm39)	missense	possibly damaging	0.85
R5261:Slc35f4	UTSW	14	49,540,946 (GRCm39)	intron	probably benign
R5398:Slc35f4	UTSW	14	49,536,304 (GRCm39)	missense	probably damaging	1.00
R5402:Slc35f4	UTSW	14	49,556,331 (GRCm39)	missense	probably damaging	1.00
R6310:Slc35f4	UTSW	14	49,559,914 (GRCm39)	missense	probably damaging	1.00
R6596:Slc35f4	UTSW	14	49,763,057 (GRCm39)	missense	probably damaging	1.00
R6729:Slc35f4	UTSW	14	49,556,417 (GRCm39)	missense	probably benign	0.16
R6864:Slc35f4	UTSW	14	49,556,310 (GRCm39)	missense	possibly damaging	0.55
R7427:Slc35f4	UTSW	14	49,536,355 (GRCm39)	missense	probably damaging	0.99
R7428:Slc35f4	UTSW	14	49,536,355 (GRCm39)	missense	probably damaging	0.99
R7559:Slc35f4	UTSW	14	49,541,732 (GRCm39)	missense	probably benign	0.03
R7596:Slc35f4	UTSW	14	49,543,666 (GRCm39)	missense	probably damaging	1.00
R7722:Slc35f4	UTSW	14	49,543,731 (GRCm39)	missense	probably benign	0.22
R8263:Slc35f4	UTSW	14	49,551,084 (GRCm39)	missense	probably damaging	1.00
R8525:Slc35f4	UTSW	14	49,541,681 (GRCm39)	missense	possibly damaging	0.56
R9198:Slc35f4	UTSW	14	49,556,377 (GRCm39)	missense	unknown
R9615:Slc35f4	UTSW	14	49,556,306 (GRCm39)	missense	probably benign	0.00
R9751:Slc35f4	UTSW	14	49,536,291 (GRCm39)	missense	possibly damaging	0.49
R9772:Slc35f4	UTSW	14	49,551,175 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTGTTCAAGTGGAAGATCAAGTGAC -3'
(R):5'- TGGCAGTCCCTATACCTTGTG -3'

Sequencing Primer
(F):5'- TCAAGTGACATGGAGAGTGGC -3'
(R):5'- CCCTATACCTTGTGAACAATGTAGGG -3'

Posted On

2015-06-20