Incidental Mutation 'R0001:Vmn1r28'
ID32235
Institutional Source Beutler Lab
Gene Symbol Vmn1r28
Ensembl Gene ENSMUSG00000115705
Gene Namevomeronasal 1 receptor 28
SynonymsV1rc25
MMRRC Submission 038297-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.139) question?
Stock #R0001 (G1)
Quality Score196
Status Validated
Chromosome6
Chromosomal Location58262037-58275639 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) G to A at 58265717 bp
ZygosityHeterozygous
Amino Acid Change Alanine to Threonine at position 182 (A182T)
Ref Sequence ENSEMBL: ENSMUSP00000153785 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000176874] [ENSMUST00000226813] [ENSMUST00000227805] [ENSMUST00000228678]
Predicted Effect probably benign
Transcript: ENSMUST00000176874
AA Change: A182T

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000135311
Gene: ENSMUSG00000094291
AA Change: A182T

DomainStartEndE-ValueType
Pfam:V1R 28 293 8.4e-59 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000226813
AA Change: A182T

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Predicted Effect probably benign
Transcript: ENSMUST00000227805
AA Change: A182T

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Predicted Effect probably benign
Transcript: ENSMUST00000228678
AA Change: A182T

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.9%
  • 20x: 94.6%
Validation Efficiency 99% (76/77)
Allele List at MGI
Other mutations in this stock
Total: 77 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700019N19Rik G A 19: 58,789,171 A61V probably damaging Het
2900092C05Rik T A 7: 12,554,607 probably benign Het
A4galt A G 15: 83,228,289 F98L probably benign Het
Abca4 T G 3: 122,081,011 probably benign Het
Acacb C T 5: 114,204,833 probably benign Het
Agbl1 A T 7: 76,419,863 H367L probably damaging Het
Apoa4 C A 9: 46,242,892 Q264K probably benign Het
Camsap2 A T 1: 136,282,888 probably benign Het
Cdan1 C A 2: 120,723,751 R939L probably benign Het
Ceacam18 G A 7: 43,636,876 V58I possibly damaging Het
Ciita A T 16: 10,514,433 probably benign Het
Clk4 T A 11: 51,268,765 probably benign Het
Cntnap2 T C 6: 46,530,171 D215G probably benign Het
Col11a2 T C 17: 34,061,612 S1218P probably benign Het
Col20a1 T C 2: 180,984,412 probably benign Het
Ctsb A G 14: 63,135,622 E76G probably benign Het
Ctu2 T C 8: 122,478,920 C161R probably benign Het
Dhx29 T C 13: 112,964,556 L1211P probably damaging Het
Dhx9 G T 1: 153,462,636 T759K probably damaging Het
Dmxl1 T C 18: 49,888,897 probably benign Het
Dpysl3 C T 18: 43,358,375 E226K possibly damaging Het
Eif2d A T 1: 131,168,127 K453* probably null Het
Epha7 T C 4: 28,961,279 probably benign Het
Fam160b1 T A 19: 57,381,756 H477Q probably benign Het
Fat3 T C 9: 16,377,873 D118G probably damaging Het
Foxn4 T A 5: 114,260,870 Q159L probably damaging Het
Frs2 G T 10: 117,074,876 H194N possibly damaging Het
Fut8 A T 12: 77,475,315 *576L probably null Het
Galns T C 8: 122,595,883 probably benign Het
Gamt G A 10: 80,259,061 probably benign Het
Gpn1 T A 5: 31,495,617 probably benign Het
Ipcef1 G T 10: 6,900,600 H330Q probably damaging Het
Itga4 A C 2: 79,326,587 Y1024S probably damaging Het
Jak2 A G 19: 29,282,387 I229V probably benign Het
Katnal1 A G 5: 148,921,275 S42P probably damaging Het
Kcnu1 A T 8: 25,859,270 D142V probably damaging Het
Lig3 C T 11: 82,790,591 R470W probably damaging Het
Mgat4c A G 10: 102,388,956 S344G probably benign Het
Miox C T 15: 89,336,274 L189F possibly damaging Het
Mipol1 C T 12: 57,460,839 probably benign Het
Mki67 C T 7: 135,699,172 V1378M probably damaging Het
Mki67 T A 7: 135,701,019 D762V probably damaging Het
Mmp9 A G 2: 164,948,383 T43A probably benign Het
Muc6 T C 7: 141,641,574 T1316A possibly damaging Het
Naip5 A G 13: 100,214,650 probably null Het
Naip5 C A 13: 100,223,114 S538I probably benign Het
Nek3 A T 8: 22,158,612 probably benign Het
Nlrp1b A G 11: 71,161,759 S948P probably damaging Het
Nyap2 A T 1: 81,192,107 H193L probably benign Het
Olfr1413 A G 1: 92,573,461 K97E possibly damaging Het
Olfr648 T A 7: 104,179,473 K312* probably null Het
Patl2 G A 2: 122,125,710 probably benign Het
Pcdhb11 A T 18: 37,423,989 R791W probably benign Het
Pkd1l3 C A 8: 109,628,633 probably benign Het
Pkn2 A T 3: 142,828,988 V73D probably benign Het
Pknox1 A T 17: 31,599,636 H281L probably damaging Het
Polr3a A G 14: 24,452,189 probably benign Het
Prss38 A G 11: 59,373,180 probably benign Het
Rad54l2 A G 9: 106,708,217 F783S probably damaging Het
Rbm5 T C 9: 107,742,424 R125G probably damaging Het
Rnpep A G 1: 135,272,485 probably benign Het
Slc1a5 T A 7: 16,793,637 probably null Het
Slc22a4 G A 11: 54,028,003 probably benign Het
Spink12 T C 18: 44,107,696 C50R probably damaging Het
Svep1 G A 4: 58,066,460 T3208I possibly damaging Het
Tgm5 G T 2: 121,077,646 D16E probably damaging Het
Tpp2 A G 1: 43,971,726 N558D probably benign Het
Trappc9 A T 15: 72,963,662 L507Q probably damaging Het
Trpm3 A T 19: 22,715,331 Q262L possibly damaging Het
Ttn A G 2: 76,776,972 probably benign Het
Ttn G A 2: 76,832,089 probably benign Het
Ubr4 T A 4: 139,451,788 L3316Q probably damaging Het
Uckl1 T A 2: 181,574,655 Y136F probably damaging Het
Vps39 A G 2: 120,318,053 V870A probably benign Het
Zdhhc25 A G 15: 88,600,909 D149G probably benign Het
Zfp648 C T 1: 154,205,286 T397M probably damaging Het
Zic2 C A 14: 122,478,957 T435K probably damaging Het
Other mutations in Vmn1r28
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01365:Vmn1r28 APN 6 58265191 missense possibly damaging 0.76
IGL01712:Vmn1r28 APN 6 58265408 missense probably benign 0.00
IGL01788:Vmn1r28 APN 6 58265537 missense probably benign 0.00
IGL02629:Vmn1r28 APN 6 58265816 missense probably benign 0.00
R0009:Vmn1r28 UTSW 6 58265717 missense probably benign 0.00
R0040:Vmn1r28 UTSW 6 58265894 missense probably damaging 1.00
R0078:Vmn1r28 UTSW 6 58265717 missense probably benign 0.00
R0079:Vmn1r28 UTSW 6 58265717 missense probably benign 0.00
R0081:Vmn1r28 UTSW 6 58265717 missense probably benign 0.00
R0164:Vmn1r28 UTSW 6 58265717 missense probably benign 0.00
R0164:Vmn1r28 UTSW 6 58265717 missense probably benign 0.00
R0165:Vmn1r28 UTSW 6 58265717 missense probably benign 0.00
R0166:Vmn1r28 UTSW 6 58265717 missense probably benign 0.00
R0167:Vmn1r28 UTSW 6 58265717 missense probably benign 0.00
R0172:Vmn1r28 UTSW 6 58265717 missense probably benign 0.00
R0173:Vmn1r28 UTSW 6 58265717 missense probably benign 0.00
R0284:Vmn1r28 UTSW 6 58265717 missense probably benign 0.00
R0288:Vmn1r28 UTSW 6 58265717 missense probably benign 0.00
R0704:Vmn1r28 UTSW 6 58265717 missense probably benign 0.00
R1143:Vmn1r28 UTSW 6 58265742 missense probably benign 0.00
R1225:Vmn1r28 UTSW 6 58265966 nonsense probably null
R1464:Vmn1r28 UTSW 6 58265232 missense probably benign 0.05
R1464:Vmn1r28 UTSW 6 58265232 missense probably benign 0.05
R1836:Vmn1r28 UTSW 6 58265252 missense probably damaging 0.98
R1882:Vmn1r28 UTSW 6 58265978 missense probably benign
R1905:Vmn1r28 UTSW 6 58265927 missense probably benign 0.01
R4912:Vmn1r28 UTSW 6 58265540 missense possibly damaging 0.86
R5071:Vmn1r28 UTSW 6 58265909 missense probably benign 0.25
R5113:Vmn1r28 UTSW 6 58265858 missense probably benign 0.12
R5261:Vmn1r28 UTSW 6 58265539 missense probably benign 0.02
R5265:Vmn1r28 UTSW 6 58265964 missense probably damaging 0.98
R5839:Vmn1r28 UTSW 6 58265295 missense possibly damaging 0.94
R6180:Vmn1r28 UTSW 6 58265491 missense probably damaging 0.99
R6643:Vmn1r28 UTSW 6 58265960 missense probably benign 0.17
R6884:Vmn1r28 UTSW 6 58265648 missense probably benign 0.03
R7393:Vmn1r28 UTSW 6 58265589 missense possibly damaging 0.81
R7471:Vmn1r28 UTSW 6 58265865 nonsense probably null
R7738:Vmn1r28 UTSW 6 58266054 missense probably benign 0.00
R7961:Vmn1r28 UTSW 6 58265193 missense probably benign
R8009:Vmn1r28 UTSW 6 58265193 missense probably benign
R8156:Vmn1r28 UTSW 6 58265198 missense probably damaging 1.00
R8167:Vmn1r28 UTSW 6 58266067 missense noncoding transcript
Predicted Primers PCR Primer
(F):5'- TGTCACAATCAGTCCCAGTACCTCC -3'
(R):5'- ACACTACCAACAGCAAGATGGTCTG -3'

Sequencing Primer
(F):5'- GGTTTTACCAATGTGAGTGAGACC -3'
(R):5'- CAGCAAGATGGTCTGGGTGG -3'
Posted On2013-05-09