Incidental Mutation 'R4289:Pycr3'
ID 322356
Institutional Source Beutler Lab
Gene Symbol Pycr3
Ensembl Gene ENSMUSG00000022571
Gene Name pyrroline-5-carboxylate reductase 3
Synonyms 1110058B13Rik, 2700073G24Rik, Pycrl
MMRRC Submission 041654-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.274) question?
Stock # R4289 (G1)
Quality Score 225
Status Validated
Chromosome 15
Chromosomal Location 75788319-75793369 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 75790655 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Serine at position 68 (N68S)
Ref Sequence ENSEMBL: ENSMUSP00000049605 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000053918] [ENSMUST00000192937]
AlphaFold Q9DCC4
Predicted Effect probably benign
Transcript: ENSMUST00000053918
AA Change: N68S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000049605
Gene: ENSMUSG00000022571
AA Change: N68S

DomainStartEndE-ValueType
Pfam:F420_oxidored 10 104 1.2e-17 PFAM
Pfam:P5CR_dimer 166 270 5.2e-37 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000192937
SMART Domains Protein: ENSMUSP00000141473
Gene: ENSMUSG00000103906

DomainStartEndE-ValueType
low complexity region 34 55 N/A INTRINSIC
Pfam:CENP-B_N 63 112 1.6e-10 PFAM
CENPB 128 195 1.41e-13 SMART
Pfam:DDE_1 238 377 8.2e-21 PFAM
low complexity region 554 567 N/A INTRINSIC
low complexity region 569 582 N/A INTRINSIC
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.4%
  • 20x: 95.5%
Validation Efficiency 100% (56/56)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that belongs to the pyrroline-5-carboxylate reductase family of enzymes. Members of this family catalyze the final step in proline biosynthesis, converting pyrroline-5-carboxylate to proline. Glutamate and ornithine are precursors in the synthesis of proline. The protein encoded by this gene is a cytoplasmic enzyme involved in the biosynthesis of proline from ornithine. [provided by RefSeq, Aug 2016]
Allele List at MGI
Other mutations in this stock
Total: 51 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Actl6a C T 3: 32,766,263 (GRCm39) T39M possibly damaging Het
Arhgdib T C 6: 136,901,156 (GRCm39) N191S probably benign Het
Arhgef39 A G 4: 43,497,353 (GRCm39) probably benign Het
Baz1a G A 12: 54,947,233 (GRCm39) R1139C probably damaging Het
Cdhr5 A T 7: 140,852,752 (GRCm39) I78N probably damaging Het
Cfap97 T A 8: 46,645,698 (GRCm39) N525K probably benign Het
Cntn2 T A 1: 132,455,481 (GRCm39) Y252F probably benign Het
Cyp3a57 G A 5: 145,286,207 (GRCm39) G48S probably damaging Het
Cyp4v3 A C 8: 45,781,260 (GRCm39) F73V possibly damaging Het
Ear10 T C 14: 44,160,404 (GRCm39) D141G probably benign Het
Fbn2 T C 18: 58,168,411 (GRCm39) I2309V probably damaging Het
Fcrl5 A G 3: 87,349,531 (GRCm39) D102G probably benign Het
Fdxacb1 A T 9: 50,683,879 (GRCm39) Q614L probably damaging Het
Gm10267 T C 18: 44,290,331 (GRCm39) T59A probably damaging Het
Gm5581 C T 6: 131,144,519 (GRCm39) noncoding transcript Het
Gm5592 G T 7: 40,808,336 (GRCm39) probably benign Het
Gtf2a1l A G 17: 89,001,884 (GRCm39) T200A probably damaging Het
Hspg2 C T 4: 137,246,251 (GRCm39) R1010C probably damaging Het
Ift122 T C 6: 115,900,852 (GRCm39) C1057R probably damaging Het
Kirrel3 A T 9: 34,934,769 (GRCm39) N73I probably benign Het
Kndc1 A G 7: 139,490,798 (GRCm39) I433M probably benign Het
Mks1 T C 11: 87,747,530 (GRCm39) probably benign Het
Mmp14 A T 14: 54,673,665 (GRCm39) K110* probably null Het
Mms19 A G 19: 41,933,992 (GRCm39) L938P probably damaging Het
Mrpl36 A T 13: 73,479,777 (GRCm39) probably null Het
Mypn T C 10: 62,966,961 (GRCm39) E905G probably damaging Het
Ncam1 G T 9: 49,468,472 (GRCm39) T329N probably damaging Het
Nfkbie T C 17: 45,869,516 (GRCm39) L157P probably damaging Het
Or14c45 T A 7: 86,176,262 (GRCm39) I99N probably damaging Het
Or4f47 T A 2: 111,972,319 (GRCm39) S10T probably benign Het
Pappa C T 4: 65,074,100 (GRCm39) A218V probably benign Het
Plekhg5 T C 4: 152,196,884 (GRCm39) Y737H probably benign Het
Plod2 G A 9: 92,485,041 (GRCm39) R514Q possibly damaging Het
Plxnb1 C T 9: 108,943,420 (GRCm39) R1888W probably damaging Het
Prss45 A G 9: 110,669,997 (GRCm39) T269A probably benign Het
Ptpn13 A G 5: 103,681,151 (GRCm39) T784A probably damaging Het
Rbis T C 3: 14,674,714 (GRCm39) M1V probably null Het
Rdh14 A T 12: 10,444,949 (GRCm39) N267Y probably benign Het
Rph3a G A 5: 121,111,368 (GRCm39) R71C probably damaging Het
Sall2 C A 14: 52,551,260 (GRCm39) R643L probably damaging Het
Spata13 T A 14: 60,928,523 (GRCm39) V27E probably damaging Het
Tbc1d1 T A 5: 64,417,771 (GRCm39) S312T probably damaging Het
Tcp11l2 T C 10: 84,440,937 (GRCm39) probably null Het
Trdn C T 10: 33,340,578 (GRCm39) S604L probably benign Het
Ttn T C 2: 76,640,742 (GRCm39) T13669A probably benign Het
Tyw3 A T 3: 154,302,645 (GRCm39) F30I probably damaging Het
Vmn1r227 G T 17: 20,956,092 (GRCm39) noncoding transcript Het
Vmn2r74 C T 7: 85,606,562 (GRCm39) M261I probably benign Het
Zfp217 C T 2: 169,956,707 (GRCm39) G764S probably benign Het
Zfp267 A G 3: 36,213,747 (GRCm39) N27S possibly damaging Het
Zfp748 T A 13: 67,689,202 (GRCm39) H686L probably damaging Het
Other mutations in Pycr3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01514:Pycr3 APN 15 75,788,853 (GRCm39) missense probably damaging 1.00
IGL02738:Pycr3 APN 15 75,790,565 (GRCm39) missense probably damaging 0.97
R0019:Pycr3 UTSW 15 75,791,155 (GRCm39) unclassified probably benign
R0426:Pycr3 UTSW 15 75,790,237 (GRCm39) missense probably benign 0.38
R1183:Pycr3 UTSW 15 75,790,647 (GRCm39) missense probably benign 0.14
R2041:Pycr3 UTSW 15 75,791,144 (GRCm39) critical splice acceptor site probably null
R4346:Pycr3 UTSW 15 75,790,580 (GRCm39) missense probably damaging 1.00
R7131:Pycr3 UTSW 15 75,790,544 (GRCm39) missense possibly damaging 0.93
R7775:Pycr3 UTSW 15 75,790,138 (GRCm39) missense probably damaging 0.99
R7778:Pycr3 UTSW 15 75,790,138 (GRCm39) missense probably damaging 0.99
R9329:Pycr3 UTSW 15 75,790,563 (GRCm39) missense probably benign 0.44
Predicted Primers PCR Primer
(F):5'- TGGGCCACAGATCCTGTTTC -3'
(R):5'- GCACAACTTAAGAGTTTGAGGAGC -3'

Sequencing Primer
(F):5'- CAGATCCTGTTTCAGAGTCAAGGC -3'
(R):5'- AGGAGCAGGGCCTGTTG -3'
Posted On 2015-06-20