Incidental Mutation 'R4303:Vmn1r90'
ID322493
Institutional Source Beutler Lab
Gene Symbol Vmn1r90
Ensembl Gene ENSMUSG00000100586
Gene Namevomeronasal 1 receptor 90
SynonymsB430211C08Rik
MMRRC Submission 041090-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.069) question?
Stock #R4303 (G1)
Quality Score225
Status Validated
Chromosome7
Chromosomal Location14555474-14563506 bp(-) (GRCm38)
Type of Mutationnonsense
DNA Base Change (assembly) C to T at 14561570 bp
ZygosityHeterozygous
Amino Acid Change Tryptophan to Stop codon at position 201 (W201*)
Ref Sequence ENSEMBL: ENSMUSP00000153726 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000185220] [ENSMUST00000226264] [ENSMUST00000226510] [ENSMUST00000226802] [ENSMUST00000227566] [ENSMUST00000227692] [ENSMUST00000227788] [ENSMUST00000227855]
Predicted Effect noncoding transcript
Transcript: ENSMUST00000044683
Predicted Effect noncoding transcript
Transcript: ENSMUST00000173220
Predicted Effect noncoding transcript
Transcript: ENSMUST00000173766
Predicted Effect probably null
Transcript: ENSMUST00000185220
AA Change: W201*
SMART Domains Protein: ENSMUSP00000140455
Gene: ENSMUSG00000100586
AA Change: W201*

DomainStartEndE-ValueType
Pfam:TAS2R 8 296 3.9e-9 PFAM
Pfam:V1R 41 295 2.7e-13 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000226264
AA Change: W201*
Predicted Effect probably null
Transcript: ENSMUST00000226510
AA Change: W119*
Predicted Effect probably null
Transcript: ENSMUST00000226802
AA Change: W201*
Predicted Effect noncoding transcript
Transcript: ENSMUST00000226981
Predicted Effect probably null
Transcript: ENSMUST00000227566
AA Change: W194*
Predicted Effect probably null
Transcript: ENSMUST00000227692
AA Change: W201*
Predicted Effect probably null
Transcript: ENSMUST00000227788
AA Change: W201*
Predicted Effect probably null
Transcript: ENSMUST00000227855
AA Change: W201*
Meta Mutation Damage Score 0.9573 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.8%
  • 10x: 97.6%
  • 20x: 96.1%
Validation Efficiency 98% (44/45)
Allele List at MGI
Other mutations in this stock
Total: 43 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcb8 T C 5: 24,401,057 S247P probably damaging Het
Atg4b A G 1: 93,768,262 E41G probably benign Het
Bckdk T C 7: 127,905,330 probably benign Het
Cacna2d1 A G 5: 16,302,248 probably null Het
Chaf1a A G 17: 56,044,068 D16G unknown Het
Defb12 A G 8: 19,112,721 I65T probably benign Het
Dnah7c T C 1: 46,748,578 Y3264H probably damaging Het
Ehhadh C A 16: 21,762,852 K463N probably damaging Het
Ehmt2 G A 17: 34,908,748 R901Q possibly damaging Het
Ern2 T C 7: 122,177,846 probably null Het
Esp6 A G 17: 40,565,144 T28A possibly damaging Het
Fam189a2 G A 19: 23,975,629 A439V probably damaging Het
Fam189a2 C T 19: 23,975,638 S436N probably damaging Het
Gm17333 A C 16: 77,852,879 noncoding transcript Het
Heatr5a T C 12: 51,956,225 T165A probably benign Het
Hoxa5 T C 6: 52,204,260 S31G probably benign Het
Ift80 A G 3: 68,894,174 I744T probably benign Het
Kalrn T C 16: 34,235,391 K853E probably damaging Het
Krt36 A T 11: 100,103,413 D279E possibly damaging Het
Map3k11 T A 19: 5,690,824 V193E probably damaging Het
Mrgpra4 T A 7: 47,980,936 M306L probably benign Het
Myo1a A G 10: 127,713,733 T428A probably benign Het
Nuggc A G 14: 65,611,172 H174R possibly damaging Het
Olfr293 G A 7: 86,663,955 V98M probably benign Het
Olfr389 A T 11: 73,776,838 M163K possibly damaging Het
Pigr G A 1: 130,841,817 D122N probably benign Het
Pik3ca C T 3: 32,439,935 R349* probably null Het
Rfxank T C 8: 70,136,212 D89G probably damaging Het
Rsf1 CGGCGGCGG CGGCGGCGGTGGCGGCGG 7: 97,579,920 probably benign Het
Serpina1a A G 12: 103,854,675 L348P probably damaging Het
Shank1 A G 7: 44,342,474 Y701C unknown Het
Six4 G T 12: 73,112,540 D207E possibly damaging Het
Slco3a1 G T 7: 74,554,528 D21E probably benign Het
Sox6 C T 7: 115,544,469 probably null Het
Spta1 A G 1: 174,179,852 N216S probably damaging Het
Stard13 T C 5: 151,062,869 N392S possibly damaging Het
Tax1bp1 T C 6: 52,727,278 V81A possibly damaging Het
Trim29 G T 9: 43,311,122 V83L probably damaging Het
Wdr31 T A 4: 62,460,389 N7I probably damaging Het
Ypel4 A G 2: 84,736,807 probably benign Het
Zfp39 T C 11: 58,890,017 K640E probably damaging Het
Zfp579 A G 7: 4,993,073 probably benign Het
Zfp974 C A 7: 27,910,232 K689N possibly damaging Het
Other mutations in Vmn1r90
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02395:Vmn1r90 APN 7 14561897 missense probably damaging 1.00
IGL03282:Vmn1r90 APN 7 14561501 missense probably benign 0.36
IGL03282:Vmn1r90 APN 7 14562168 missense possibly damaging 0.92
IGL03365:Vmn1r90 APN 7 14561304 missense probably damaging 0.99
R2519:Vmn1r90 UTSW 7 14561718 missense probably damaging 1.00
R2996:Vmn1r90 UTSW 7 14561534 missense probably damaging 1.00
R4086:Vmn1r90 UTSW 7 14563294 splice site probably benign
R4508:Vmn1r90 UTSW 7 14562159 missense probably benign 0.01
R4551:Vmn1r90 UTSW 7 14561969 missense possibly damaging 0.88
R4672:Vmn1r90 UTSW 7 14561568 missense probably benign 0.25
R4915:Vmn1r90 UTSW 7 14562025 missense possibly damaging 0.82
R5227:Vmn1r90 UTSW 7 14561676 missense possibly damaging 0.50
R5629:Vmn1r90 UTSW 7 14562086 missense possibly damaging 0.48
R5888:Vmn1r90 UTSW 7 14561855 missense probably damaging 1.00
R7532:Vmn1r90 UTSW 7 14561264 missense possibly damaging 0.75
R7644:Vmn1r90 UTSW 7 14561691 nonsense probably null
Predicted Primers PCR Primer
(F):5'- TGCCTCAGCCACAGACGAG -3'
(R):5'- CCAAGGTCATAAGCTATTCCTGTTG -3'

Sequencing Primer
(F):5'- ACGAGAGTCTACAAAAACAATGTG -3'
(R):5'- GTCATAAGCTATTCCTGTTGTAGTTG -3'
Posted On2015-06-20