Mutagenetix > Incidental Mutation

Incidental Mutation 'R4298:Prdm11'

323412

Institutional Source

Beutler Lab

Gene Symbol

Prdm11

Ensembl Gene

ENSMUSG00000075028

Gene Name

PR domain containing 11

Synonyms

MMRRC Submission

041086-MU

Accession Numbers

Is this an essential gene?

Possibly essential (E-score: 0.552) question?

Stock #

R4298 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

92965151-93046167 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 92993383 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 179 (T179A)

Ref Sequence

ENSEMBL: ENSMUSP00000136795 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000111272] [ENSMUST00000111274] [ENSMUST00000178666]

AlphaFold

A2AGX3

Predicted Effect

probably benign
Transcript: ENSMUST00000111272
AA Change: T131A

PolyPhen 2 Score 0.124 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000106903
Gene: ENSMUSG00000075028
AA Change: T131A

Domain	Start	End	E-Value	Type
SANT	147	217	3.94e-3	SMART
low complexity region	291	312	N/A	INTRINSIC
low complexity region	434	448	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000111274
AA Change: T179A

PolyPhen 2 Score 0.437 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000106905
Gene: ENSMUSG00000075028
AA Change: T179A

Domain	Start	End	E-Value	Type
SET	115	232	5.16e-2	SMART
low complexity region	369	380	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000178666
AA Change: T179A

PolyPhen 2 Score 0.437 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000136795
Gene: ENSMUSG00000075028
AA Change: T179A

Domain	Start	End	E-Value	Type
SET	115	232	5.16e-2	SMART
low complexity region	369	380	N/A	INTRINSIC

Meta Mutation Damage Score

0.0856

Coding Region Coverage

1x: 99.4%
3x: 98.8%
10x: 97.5%
20x: 95.9%

Validation Efficiency

100% (54/54)

Allele List at MGI

Other mutations in this stock

Total: 49 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc12	T	C	8: 86,531,525		probably null	Het
Ccser2	T	A	14: 36,890,380	Q158L	possibly damaging	Het
Cct7	T	A	6: 85,468,173	C469S	probably damaging	Het
Chmp7	A	T	14: 69,719,201		probably null	Het
Clcn4	C	T	7: 7,296,738	D31N	possibly damaging	Het
Col9a2	C	G	4: 121,054,258	R599G	probably damaging	Het
Ctdp1	A	T	18: 80,449,957	V441E	probably benign	Het
Cyp4a10	T	C	4: 115,532,692	L498P	probably damaging	Het
Dsc3	A	T	18: 19,980,754	N370K	possibly damaging	Het
Dusp12	G	A	1: 170,880,629	T173M	probably benign	Het
Ebf3	C	T	7: 137,225,229	R318Q	possibly damaging	Het
Epcam	T	C	17: 87,640,534		probably null	Het
Erich6	G	T	3: 58,624,291	A428D	probably benign	Het
Ext1	A	T	15: 53,345,125	I80N	probably benign	Het
Extl1	T	C	4: 134,357,658	E667G	probably damaging	Het
F2	T	G	2: 91,629,320		probably null	Het
Fbxw16	T	C	9: 109,446,557	I135V	probably benign	Het
Glipr1l1	A	T	10: 112,062,347	D119V	probably benign	Het
Gprc5b	G	A	7: 118,984,214	A144V	possibly damaging	Het
Lmbrd2	G	A	15: 9,165,795	R252H	possibly damaging	Het
Lyst	A	G	13: 13,634,887	T381A	probably damaging	Het
Mcpt4	A	T	14: 56,060,987	V97D	possibly damaging	Het
Nefh	A	G	11: 4,940,066	I851T	probably benign	Het
Nf1	A	T	11: 79,384,244	I44F	probably damaging	Het
Nyap2	A	T	1: 81,241,096	I278F	probably damaging	Het
Olfr1263	A	T	2: 90,015,649	T240S	probably benign	Het
Olfr268-ps1	G	T	2: 111,844,444		noncoding transcript	Het
Pdcd4	C	A	19: 53,919,661	P201Q	probably damaging	Het
Pramef25	A	T	4: 143,949,143	L371*	probably null	Het
Qrfpr	T	A	3: 36,189,554	I133F	probably damaging	Het
Rack1	T	C	11: 48,801,626		probably benign	Het
Reln	A	C	5: 21,920,487	C2733G	probably damaging	Het
Rrs1	C	T	1: 9,546,223	R234C	possibly damaging	Het
Sag	G	C	1: 87,845,015	D402H	probably benign	Het
Sbk3	T	A	7: 4,969,980	T64S	probably benign	Het
Setx	GTGGCT	GT	2: 29,154,061	1814	probably null	Het
Sh3gl1	C	T	17: 56,019,173	G111D	probably damaging	Het
Spata20	G	A	11: 94,483,088	R379W	probably damaging	Het
St3gal2	T	C	8: 110,962,359	M177T	probably benign	Het
Stk39	C	T	2: 68,390,940	G213D	probably damaging	Het
Szt2	A	G	4: 118,365,406		probably benign	Het
Taf1d	T	C	9: 15,308,643	S63P	probably damaging	Het
Tnfrsf13b	C	G	11: 61,140,817		probably null	Het
Ttn	G	T	2: 76,724,050	A30807D	probably damaging	Het
Unc119	A	G	11: 78,348,122	N158S	probably damaging	Het
Vmn2r116	T	A	17: 23,401,827	I845N	possibly damaging	Het
Vmn2r12	C	A	5: 109,091,964	M244I	probably benign	Het
Zdhhc4	A	G	5: 143,324,242	V87A	probably damaging	Het
Zwilch	A	G	9: 64,155,162		probably null	Het

Other mutations in Prdm11

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01526:Prdm11	APN	2	93012757	missense	probably damaging	1.00
IGL02108:Prdm11	APN	2	92975703	missense	probably damaging	1.00
IGL02166:Prdm11	APN	2	93012863	missense	probably damaging	1.00
IGL02369:Prdm11	APN	2	92975519	missense	probably benign	0.00
IGL02388:Prdm11	APN	2	92975612	missense	possibly damaging	0.90
IGL02606:Prdm11	APN	2	92975603	missense	probably benign	0.02
IGL02967:Prdm11	APN	2	93012889	missense	probably damaging	1.00
IGL03085:Prdm11	APN	2	92974959	missense	possibly damaging	0.86
IGL03125:Prdm11	APN	2	92980622	missense	probably benign	0.22
E0370:Prdm11	UTSW	2	92980579	missense	probably damaging	1.00
R0607:Prdm11	UTSW	2	93013785	missense	possibly damaging	0.85
R0964:Prdm11	UTSW	2	92989222	intron	probably benign
R4011:Prdm11	UTSW	2	93012830	missense	probably damaging	1.00
R4951:Prdm11	UTSW	2	92980609	missense	probably damaging	1.00
R5150:Prdm11	UTSW	2	92975472	missense	probably damaging	1.00
R5320:Prdm11	UTSW	2	93012881	missense	probably benign	0.00
R5432:Prdm11	UTSW	2	92975813	missense	probably benign	0.00
R6442:Prdm11	UTSW	2	92975645	missense	probably benign	0.34
R6754:Prdm11	UTSW	2	93013792	missense	probably damaging	1.00
R7403:Prdm11	UTSW	2	92986691	missense	probably benign
R7480:Prdm11	UTSW	2	92975324	missense	probably benign	0.05
R7497:Prdm11	UTSW	2	93012707	missense	possibly damaging	0.93
R7633:Prdm11	UTSW	2	92980654	missense	probably damaging	1.00
R7873:Prdm11	UTSW	2	92989283	missense	probably benign	0.01
R7936:Prdm11	UTSW	2	92975761	missense	possibly damaging	0.67
R7939:Prdm11	UTSW	2	93012729	missense	probably damaging	1.00
R8548:Prdm11	UTSW	2	93012758	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTTAGAGCCTCTGATGGAAGCC -3'
(R):5'- AACTTAGACAGCGGCTGAGG -3'

Sequencing Primer
(F):5'- CTCTGATGGAAGCCTGGGGAAC -3'
(R):5'- AGACAGCGGCTGAGGTTGTG -3'

Posted On

2015-06-20