Incidental Mutation 'R4358:P3h4'
ID 324666
Institutional Source Beutler Lab
Gene Symbol P3h4
Ensembl Gene ENSMUSG00000006931
Gene Name prolyl 3-hydroxylase family member 4 (non-enzymatic)
Synonyms 1110036O03Rik, Leprel4
MMRRC Submission 041110-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.080) question?
Stock # R4358 (G1)
Quality Score 225
Status Validated
Chromosome 11
Chromosomal Location 100299293-100305542 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 100304452 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Phenylalanine to Serine at position 263 (F263S)
Ref Sequence ENSEMBL: ENSMUSP00000065278 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000001595] [ENSMUST00000066489] [ENSMUST00000107400]
AlphaFold Q8K2B0
Predicted Effect probably benign
Transcript: ENSMUST00000001595
SMART Domains Protein: ENSMUSP00000001595
Gene: ENSMUSG00000001555

DomainStartEndE-ValueType
signal peptide 1 31 N/A INTRINSIC
Pfam:FKBP_C 54 146 5.4e-30 PFAM
Pfam:FKBP_C 166 258 4e-29 PFAM
Pfam:FKBP_C 278 370 2.3e-28 PFAM
Pfam:FKBP_C 391 482 6.2e-26 PFAM
EFh 503 528 2.16e0 SMART
EFh 545 573 2.04e0 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000066489
AA Change: F263S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000065278
Gene: ENSMUSG00000006931
AA Change: F263S

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
low complexity region 56 70 N/A INTRINSIC
low complexity region 93 104 N/A INTRINSIC
internal_repeat_1 151 215 5.16e-8 PROSPERO
internal_repeat_1 302 364 5.16e-8 PROSPERO
low complexity region 385 408 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000107400
SMART Domains Protein: ENSMUSP00000103023
Gene: ENSMUSG00000001555

DomainStartEndE-ValueType
signal peptide 1 31 N/A INTRINSIC
Pfam:FKBP_C 54 146 1.4e-29 PFAM
Pfam:FKBP_C 166 258 2e-29 PFAM
Pfam:FKBP_C 279 370 4.9e-26 PFAM
EFh 391 416 2.16e0 SMART
EFh 433 461 2.04e0 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000134815
SMART Domains Protein: ENSMUSP00000123577
Gene: ENSMUSG00000001555

DomainStartEndE-ValueType
Pfam:FKBP_C 34 65 1.6e-7 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000141840
Meta Mutation Damage Score 0.9126 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.5%
  • 20x: 95.8%
Validation Efficiency 98% (48/49)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This nucleolar protein was first characterized because it was an autoantigen in cases on interstitial cystitis. The protein, with a predicted molecular weight of 50 kDa, appears to be localized in the particulate compartment of the interphase nucleolus, with a distribution distinct from that of nucleolar protein B23. During mitosis it is associated with chromosomes. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased trabecular volume, compact bone thickness, skin tensile strength and muscle below the hypodermis with decreased cutaneous collagen fiber density. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 41 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Alpk1 C T 3: 127,523,022 (GRCm39) V7M probably damaging Het
Birc6 T A 17: 74,926,663 (GRCm39) probably null Het
Chil3 G A 3: 106,067,815 (GRCm39) Q117* probably null Het
Daglb T C 5: 143,458,889 (GRCm39) probably benign Het
Dnah11 G A 12: 118,089,578 (GRCm39) R1163* probably null Het
Ftsj3 G A 11: 106,144,502 (GRCm39) A134V probably benign Het
G530012D18Rik G C 1: 85,504,923 (GRCm39) probably benign Het
Gfod2 T C 8: 106,444,177 (GRCm39) N122S possibly damaging Het
Golga4 A G 9: 118,380,946 (GRCm39) E507G probably benign Het
Ids C A X: 69,389,950 (GRCm39) G506C probably damaging Het
Ifna15 G T 4: 88,476,079 (GRCm39) T135N probably benign Het
Igsf9b G A 9: 27,220,774 (GRCm39) V47I possibly damaging Het
Kif24 A G 4: 41,413,827 (GRCm39) probably null Het
L3hypdh A T 12: 72,124,198 (GRCm39) D247E probably damaging Het
Lama2 A T 10: 26,860,489 (GRCm39) N2999K probably damaging Het
Lpcat2 C A 8: 93,599,734 (GRCm39) P234Q probably benign Het
Lrp10 C T 14: 54,705,823 (GRCm39) R338C probably damaging Het
Mcm9 A C 10: 53,413,749 (GRCm39) C444G probably benign Het
Mecom G A 3: 30,033,934 (GRCm39) Q246* probably null Het
Mib1 A G 18: 10,751,844 (GRCm39) N242S probably benign Het
Or2a7 T A 6: 43,151,160 (GRCm39) M80K probably damaging Het
Or8g26 G A 9: 39,095,864 (GRCm39) C127Y probably damaging Het
Pcsk1 T C 13: 75,260,838 (GRCm39) S354P possibly damaging Het
Pms2 T A 5: 143,862,744 (GRCm39) F617Y probably damaging Het
Prps2 T A X: 166,146,545 (GRCm39) K176* probably null Het
Psmd13 G T 7: 140,469,418 (GRCm39) probably benign Het
Pygl G A 12: 70,242,464 (GRCm39) S573L probably damaging Het
Rapgef3 A G 15: 97,646,529 (GRCm39) V794A probably benign Het
Rasgrf2 C A 13: 92,038,796 (GRCm39) D1017Y probably damaging Het
Rb1cc1 A G 1: 6,315,861 (GRCm39) D555G probably damaging Het
Rptor G T 11: 119,562,171 (GRCm39) E111D probably damaging Het
Sall4 T C 2: 168,597,400 (GRCm39) E480G probably benign Het
Scn4a G A 11: 106,239,683 (GRCm39) probably null Het
Scn8a G A 15: 100,838,014 (GRCm39) A94T probably benign Het
Slc26a6 T A 9: 108,738,982 (GRCm39) C636S probably benign Het
Slc38a11 T C 2: 65,188,460 (GRCm39) K103R probably benign Het
Sned1 T C 1: 93,202,381 (GRCm39) L675P probably benign Het
Spsb1 T C 4: 149,991,232 (GRCm39) H112R probably damaging Het
Tmem132d G A 5: 128,061,405 (GRCm39) T399M possibly damaging Het
Zfp939 A G 7: 39,123,144 (GRCm39) noncoding transcript Het
Zfp951 T C 5: 104,962,541 (GRCm39) K342E probably damaging Het
Other mutations in P3h4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02208:P3h4 APN 11 100,304,901 (GRCm39) missense probably damaging 0.96
slight UTSW 11 100,302,671 (GRCm39) missense probably damaging 0.99
R2204:P3h4 UTSW 11 100,304,832 (GRCm39) missense probably benign 0.02
R2441:P3h4 UTSW 11 100,304,594 (GRCm39) missense probably damaging 1.00
R4356:P3h4 UTSW 11 100,304,452 (GRCm39) missense probably damaging 1.00
R5762:P3h4 UTSW 11 100,302,677 (GRCm39) missense probably damaging 1.00
R5877:P3h4 UTSW 11 100,304,843 (GRCm39) missense probably benign 0.05
R6167:P3h4 UTSW 11 100,302,671 (GRCm39) missense probably damaging 0.99
R6371:P3h4 UTSW 11 100,302,575 (GRCm39) missense probably benign 0.44
R7830:P3h4 UTSW 11 100,304,869 (GRCm39) missense probably damaging 1.00
R9652:P3h4 UTSW 11 100,304,499 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- TATACCAGCATTTCTCTCATCAGAC -3'
(R):5'- TCGGGGTCTTCTTGACTACC -3'

Sequencing Primer
(F):5'- AGCATTTCTCTCATCAGACTGGAGAC -3'
(R):5'- TGACTACCCCCGCCATG -3'
Posted On 2015-06-24