Incidental Mutation 'R4274:Acap2'
| ID |
324735 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Acap2
|
| Ensembl Gene |
ENSMUSG00000049076 |
| Gene Name |
ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 |
| Synonyms |
Centb2, 9530039J15Rik |
| MMRRC Submission |
041077-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.135)
|
| Stock # |
R4274 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
16 |
| Chromosomal Location |
31092412-31201245 bp(-) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to T
at 31108114 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Threonine
at position 528
(S528T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000154852
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000058033]
[ENSMUST00000229010]
[ENSMUST00000230614]
[ENSMUST00000230698]
[ENSMUST00000231125]
|
| AlphaFold |
Q6ZQK5 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000058033
AA Change: S503T
PolyPhen 2
Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)
|
| SMART Domains |
Protein: ENSMUSP00000061501
Gene: ENSMUSG00000049076
AA Change: S503T
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:BAR_3
|
5 |
238 |
9.1e-96 |
PFAM |
|
PH
|
267 |
363 |
1.73e-17 |
SMART |
|
ArfGap
|
399 |
520 |
2.23e-63 |
SMART |
|
ANK
|
632 |
661 |
6.71e-2 |
SMART |
|
ANK
|
665 |
694 |
3.04e0 |
SMART |
|
ANK
|
698 |
727 |
6.64e2 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000229010
AA Change: S521T
PolyPhen 2
Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000230614
AA Change: S521T
PolyPhen 2
Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000230698
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000231125
AA Change: S528T
PolyPhen 2
Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)
|
| Meta Mutation Damage Score |
0.0887 |
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.6%
- 20x: 96.1%
|
| Validation Efficiency |
98% (55/56) |
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 49 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca8a |
T |
C |
11: 110,090,104 (GRCm38) |
Y36C |
probably damaging |
Het |
| Abcc4 |
T |
C |
14: 118,629,622 (GRCm38) |
R228G |
probably damaging |
Het |
| Adamts6 |
T |
A |
13: 104,314,279 (GRCm38) |
D323E |
possibly damaging |
Het |
| Ano8 |
G |
T |
8: 71,478,741 (GRCm38) |
|
probably benign |
Het |
| Ano9 |
T |
G |
7: 141,110,695 (GRCm38) |
Q48P |
probably benign |
Het |
| Atp13a1 |
T |
G |
8: 69,805,292 (GRCm38) |
L899R |
probably benign |
Het |
| Card10 |
G |
A |
15: 78,780,514 (GRCm38) |
R747W |
probably damaging |
Het |
| Csn1s1 |
T |
C |
5: 87,680,961 (GRCm38) |
*295R |
probably null |
Het |
| Dhx9 |
A |
G |
1: 153,468,926 (GRCm38) |
I505T |
probably damaging |
Het |
| Dnajc17 |
A |
T |
2: 119,186,385 (GRCm38) |
S37T |
probably benign |
Het |
| Dot1l |
T |
A |
10: 80,783,988 (GRCm38) |
|
probably null |
Het |
| Dph7 |
A |
G |
2: 24,963,500 (GRCm38) |
N109S |
possibly damaging |
Het |
| Ednra |
C |
T |
8: 77,720,302 (GRCm38) |
G49D |
probably benign |
Het |
| Fam83g |
T |
C |
11: 61,701,728 (GRCm38) |
M259T |
probably damaging |
Het |
| Fer1l4 |
A |
T |
2: 156,020,544 (GRCm38) |
D1736E |
probably damaging |
Het |
| Fetub |
T |
C |
16: 22,935,679 (GRCm38) |
I212T |
probably damaging |
Het |
| Foxc2 |
C |
A |
8: 121,117,700 (GRCm38) |
S362R |
probably benign |
Het |
| Gm8444 |
A |
G |
15: 81,843,533 (GRCm38) |
|
probably benign |
Het |
| Gpank1 |
G |
A |
17: 35,124,269 (GRCm38) |
E242K |
probably benign |
Het |
| Hps4 |
G |
A |
5: 112,375,030 (GRCm38) |
|
probably benign |
Het |
| Hspg2 |
C |
T |
4: 137,518,940 (GRCm38) |
R1010C |
probably damaging |
Het |
| Ighv1-20 |
A |
T |
12: 114,724,199 (GRCm38) |
W3R |
probably damaging |
Het |
| Kcnq1 |
T |
C |
7: 143,184,442 (GRCm38) |
I209T |
probably damaging |
Het |
| Me3 |
A |
T |
7: 89,806,726 (GRCm38) |
E262V |
probably damaging |
Het |
| Mei1 |
G |
A |
15: 82,124,863 (GRCm38) |
R1233Q |
possibly damaging |
Het |
| Mrc2 |
G |
A |
11: 105,348,431 (GRCm38) |
|
probably null |
Het |
| Mrgprx3-ps |
T |
C |
7: 47,309,826 (GRCm38) |
|
noncoding transcript |
Het |
| Or4k37 |
A |
T |
2: 111,328,815 (GRCm38) |
Y132F |
probably damaging |
Het |
| Or5p6 |
C |
A |
7: 108,031,544 (GRCm38) |
K266N |
probably benign |
Het |
| Or8a1b |
A |
T |
9: 37,712,068 (GRCm38) |
D70E |
probably damaging |
Het |
| Ostm1 |
T |
C |
10: 42,698,234 (GRCm38) |
F153L |
probably damaging |
Het |
| Pkd1l3 |
C |
T |
8: 109,624,119 (GRCm38) |
T532I |
possibly damaging |
Het |
| Prpf40a |
G |
A |
2: 53,146,172 (GRCm38) |
H624Y |
probably damaging |
Het |
| Rtn2 |
T |
C |
7: 19,287,324 (GRCm38) |
S210P |
probably benign |
Het |
| Siglec1 |
T |
C |
2: 131,085,814 (GRCm38) |
Q24R |
probably benign |
Het |
| Smurf1 |
T |
C |
5: 144,896,775 (GRCm38) |
|
probably benign |
Het |
| Ssr1 |
G |
A |
13: 37,985,290 (GRCm38) |
L225F |
possibly damaging |
Het |
| Tlr6 |
A |
G |
5: 64,953,638 (GRCm38) |
I642T |
probably benign |
Het |
| Tnpo1 |
GCACCTCTGCTTCCTC |
GCACCTCTGCTTCCTCACCTCTGCTTCCTC |
13: 98,867,129 (GRCm38) |
|
probably null |
Het |
| Tnrc18 |
T |
C |
5: 142,743,650 (GRCm38) |
K1674R |
unknown |
Het |
| Tns1 |
T |
A |
1: 73,928,098 (GRCm38) |
Y1115F |
probably damaging |
Het |
| Trim56 |
T |
A |
5: 137,113,687 (GRCm38) |
E325V |
probably damaging |
Het |
| Ttn |
T |
C |
2: 76,775,974 (GRCm38) |
T18164A |
possibly damaging |
Het |
| Ugt2a3 |
A |
T |
5: 87,327,689 (GRCm38) |
D361E |
probably damaging |
Het |
| Vmn2r125 |
T |
C |
4: 156,350,087 (GRCm38) |
I56T |
probably benign |
Het |
| Xkr5 |
T |
A |
8: 18,934,167 (GRCm38) |
H453L |
probably benign |
Het |
| Zcchc7 |
C |
T |
4: 44,931,335 (GRCm38) |
H496Y |
possibly damaging |
Het |
| Zfp82 |
C |
T |
7: 30,056,367 (GRCm38) |
R430H |
probably damaging |
Het |
| Zscan22 |
T |
C |
7: 12,906,324 (GRCm38) |
V6A |
probably benign |
Het |
|
| Other mutations in Acap2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00533:Acap2
|
APN |
16 |
31,139,475 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01330:Acap2
|
APN |
16 |
31,154,677 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01420:Acap2
|
APN |
16 |
31,101,819 (GRCm38) |
splice site |
probably benign |
|
|
IGL02064:Acap2
|
APN |
16 |
31,127,328 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02173:Acap2
|
APN |
16 |
31,108,147 (GRCm38) |
missense |
possibly damaging |
0.68 |
|
IGL02453:Acap2
|
APN |
16 |
31,131,257 (GRCm38) |
splice site |
probably null |
|
|
IGL02883:Acap2
|
APN |
16 |
31,096,345 (GRCm38) |
unclassified |
probably benign |
|
|
IGL03203:Acap2
|
APN |
16 |
31,096,345 (GRCm38) |
unclassified |
probably benign |
|
|
IGL03342:Acap2
|
APN |
16 |
31,105,492 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1251:Acap2
|
UTSW |
16 |
31,108,171 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1377:Acap2
|
UTSW |
16 |
31,116,051 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1432:Acap2
|
UTSW |
16 |
31,111,083 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1546:Acap2
|
UTSW |
16 |
31,104,936 (GRCm38) |
nonsense |
probably null |
|
|
R1594:Acap2
|
UTSW |
16 |
31,127,387 (GRCm38) |
missense |
probably benign |
0.01 |
|
R1829:Acap2
|
UTSW |
16 |
31,110,934 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1853:Acap2
|
UTSW |
16 |
31,117,304 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1970:Acap2
|
UTSW |
16 |
31,133,527 (GRCm38) |
critical splice donor site |
probably null |
|
|
R2023:Acap2
|
UTSW |
16 |
31,119,415 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R2086:Acap2
|
UTSW |
16 |
31,110,945 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2145:Acap2
|
UTSW |
16 |
31,105,524 (GRCm38) |
missense |
probably benign |
|
|
R2177:Acap2
|
UTSW |
16 |
31,133,528 (GRCm38) |
critical splice donor site |
probably null |
|
|
R2214:Acap2
|
UTSW |
16 |
31,108,128 (GRCm38) |
missense |
probably benign |
0.19 |
|
R2392:Acap2
|
UTSW |
16 |
31,139,640 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R2438:Acap2
|
UTSW |
16 |
31,117,315 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2913:Acap2
|
UTSW |
16 |
31,116,069 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R4207:Acap2
|
UTSW |
16 |
31,119,427 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R4814:Acap2
|
UTSW |
16 |
31,108,126 (GRCm38) |
missense |
probably benign |
|
|
R4860:Acap2
|
UTSW |
16 |
31,103,499 (GRCm38) |
missense |
possibly damaging |
0.92 |
|
R4860:Acap2
|
UTSW |
16 |
31,103,499 (GRCm38) |
missense |
possibly damaging |
0.92 |
|
R5310:Acap2
|
UTSW |
16 |
31,133,609 (GRCm38) |
missense |
probably benign |
0.00 |
|
R5345:Acap2
|
UTSW |
16 |
31,108,126 (GRCm38) |
missense |
probably benign |
|
|
R5388:Acap2
|
UTSW |
16 |
31,109,725 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5551:Acap2
|
UTSW |
16 |
31,104,908 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5578:Acap2
|
UTSW |
16 |
31,108,114 (GRCm38) |
missense |
probably benign |
0.00 |
|
R6341:Acap2
|
UTSW |
16 |
31,105,546 (GRCm38) |
missense |
possibly damaging |
0.86 |
|
R6659:Acap2
|
UTSW |
16 |
31,131,315 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R6977:Acap2
|
UTSW |
16 |
31,117,261 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7262:Acap2
|
UTSW |
16 |
31,127,319 (GRCm38) |
critical splice donor site |
probably null |
|
|
R7304:Acap2
|
UTSW |
16 |
31,108,116 (GRCm38) |
missense |
probably benign |
0.05 |
|
R7310:Acap2
|
UTSW |
16 |
31,108,154 (GRCm38) |
nonsense |
probably null |
|
|
R7318:Acap2
|
UTSW |
16 |
31,127,337 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7514:Acap2
|
UTSW |
16 |
31,154,567 (GRCm38) |
splice site |
probably null |
|
|
R7875:Acap2
|
UTSW |
16 |
31,139,641 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R8256:Acap2
|
UTSW |
16 |
31,139,469 (GRCm38) |
critical splice donor site |
probably null |
|
|
R9026:Acap2
|
UTSW |
16 |
31,107,088 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R9177:Acap2
|
UTSW |
16 |
31,136,574 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9252:Acap2
|
UTSW |
16 |
31,101,823 (GRCm38) |
critical splice donor site |
probably null |
|
|
R9268:Acap2
|
UTSW |
16 |
31,136,574 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9329:Acap2
|
UTSW |
16 |
31,127,420 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9467:Acap2
|
UTSW |
16 |
31,111,083 (GRCm38) |
missense |
possibly damaging |
0.54 |
|
R9528:Acap2
|
UTSW |
16 |
31,111,090 (GRCm38) |
missense |
possibly damaging |
0.75 |
|
R9762:Acap2
|
UTSW |
16 |
31,110,945 (GRCm38) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGCACAGAAGGAAATAGGCTTCTAG -3'
(R):5'- TGGTAACTGCTGGGCCATTC -3'
Sequencing Primer
(F):5'- AGGCTTCTAGTATTTACAAAACCAC -3'
(R):5'- CACCCCTGTTTACTTTTAACTACTG -3'
|
| Posted On |
2015-06-24 |
Incidental Mutation