Incidental Mutation 'R4378:Amigo2'
ID 325214
Institutional Source Beutler Lab
Gene Symbol Amigo2
Ensembl Gene ENSMUSG00000048218
Gene Name adhesion molecule with Ig like domain 2
Synonyms
MMRRC Submission 041121-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.183) question?
Stock # R4378 (G1)
Quality Score 225
Status Validated
Chromosome 15
Chromosomal Location 97142006-97145168 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 97143859 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Phenylalanine to Leucine at position 188 (F188L)
Ref Sequence ENSEMBL: ENSMUSP00000155019 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000053106] [ENSMUST00000059433] [ENSMUST00000229890]
AlphaFold Q80ZD9
Predicted Effect possibly damaging
Transcript: ENSMUST00000053106
AA Change: F188L

PolyPhen 2 Score 0.688 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000059913
Gene: ENSMUSG00000048218
AA Change: F188L

DomainStartEndE-ValueType
signal peptide 1 38 N/A INTRINSIC
LRRNT 39 71 7e-1 SMART
LRR 91 114 2.63e0 SMART
LRR 115 138 6.96e0 SMART
LRR_TYP 139 162 4.47e-3 SMART
LRR 163 186 1.07e0 SMART
LRR 190 214 1.06e2 SMART
LRRCT 227 282 4.74e-3 SMART
IGc2 300 369 9.34e-4 SMART
transmembrane domain 397 419 N/A INTRINSIC
low complexity region 435 445 N/A INTRINSIC
low complexity region 501 512 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000059433
SMART Domains Protein: ENSMUSP00000055485
Gene: ENSMUSG00000044250

DomainStartEndE-ValueType
Pfam:PC-Esterase 1 254 5.1e-53 PFAM
low complexity region 295 338 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000226615
Predicted Effect possibly damaging
Transcript: ENSMUST00000229890
AA Change: F188L

PolyPhen 2 Score 0.688 (Sensitivity: 0.86; Specificity: 0.92)
Meta Mutation Damage Score 0.0623 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.1%
  • 20x: 94.8%
Validation Efficiency 96% (47/49)
Allele List at MGI
Other mutations in this stock
Total: 43 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca13 A G 11: 9,243,644 (GRCm39) K1836E probably benign Het
Adora1 A G 1: 134,130,948 (GRCm39) F241S probably damaging Het
Akt1s1 C T 7: 44,503,384 (GRCm39) T168M probably damaging Het
Amigo1 C T 3: 108,099,069 (GRCm39) probably benign Het
Armc2 T C 10: 41,869,078 (GRCm39) T29A possibly damaging Het
Axl G A 7: 25,458,262 (GRCm39) A822V probably benign Het
Borcs5 T C 6: 134,621,292 (GRCm39) V21A probably benign Het
Cdc42ep3 A G 17: 79,642,408 (GRCm39) S171P probably benign Het
Cmas T C 6: 142,718,011 (GRCm39) probably benign Het
Cyp4f40 A G 17: 32,887,003 (GRCm39) N158S probably null Het
Dnah6 G T 6: 73,095,009 (GRCm39) N2139K probably benign Het
Elmo1 A T 13: 20,557,286 (GRCm39) H409L possibly damaging Het
Exoc1l A G 5: 76,648,380 (GRCm39) K62R probably damaging Het
Exoc4 T A 6: 33,792,622 (GRCm39) V584E probably damaging Het
Gm9116 A G 3: 93,817,786 (GRCm39) noncoding transcript Het
Gxylt2 A G 6: 100,710,161 (GRCm39) S101G probably benign Het
Hsph1 C A 5: 149,559,472 (GRCm39) E24* probably null Het
Ighv1-56 C T 12: 115,206,568 (GRCm39) E50K probably benign Het
Kirrel1 C T 3: 86,996,458 (GRCm39) M380I probably null Het
Lrriq1 A T 10: 103,038,225 (GRCm39) D859E probably damaging Het
Mapk7 G A 11: 61,384,493 (GRCm39) S71L probably damaging Het
Nars1 A G 18: 64,634,424 (GRCm39) Y500H probably damaging Het
Or1j1 T C 2: 36,702,481 (GRCm39) M208V probably benign Het
Or5d20-ps1 G T 2: 87,931,829 (GRCm39) N167K unknown Het
Phc1 T C 6: 122,311,966 (GRCm39) N64S possibly damaging Het
Ppp4r3b T A 11: 29,159,450 (GRCm39) N180K possibly damaging Het
Primpol G A 8: 47,029,218 (GRCm39) probably benign Het
Prtg T C 9: 72,750,042 (GRCm39) S149P possibly damaging Het
Qrich2 T C 11: 116,337,741 (GRCm39) S1916G probably damaging Het
Rps6ka5 A T 12: 100,564,196 (GRCm39) Y218N probably damaging Het
Setbp1 T C 18: 78,899,833 (GRCm39) D1278G possibly damaging Het
Sirt1 C T 10: 63,174,728 (GRCm39) A8T probably benign Het
Sobp C T 10: 42,897,300 (GRCm39) V762I probably damaging Het
Sptan1 T C 2: 29,915,581 (GRCm39) S1994P probably damaging Het
Taok3 T C 5: 117,347,636 (GRCm39) I87T probably damaging Het
Tecta T C 9: 42,278,004 (GRCm39) Y1168C probably damaging Het
Trhr A G 15: 44,061,023 (GRCm39) Y181C probably damaging Het
Ube4b C T 4: 149,468,255 (GRCm39) D174N probably damaging Het
Ubr4 C T 4: 139,137,751 (GRCm39) H1067Y possibly damaging Het
Vmn2r86 A G 10: 130,288,469 (GRCm39) I344T possibly damaging Het
Vmn2r88 T A 14: 51,650,746 (GRCm39) L153* probably null Het
Zfp516 T A 18: 83,005,305 (GRCm39) D736E probably benign Het
Zfp612 G T 8: 110,815,683 (GRCm39) V258F possibly damaging Het
Other mutations in Amigo2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00587:Amigo2 APN 15 97,143,327 (GRCm39) missense possibly damaging 0.84
IGL01451:Amigo2 APN 15 97,143,107 (GRCm39) missense probably benign 0.22
IGL01510:Amigo2 APN 15 97,142,962 (GRCm39) missense probably benign
IGL02496:Amigo2 APN 15 97,143,494 (GRCm39) nonsense probably null
IGL02720:Amigo2 APN 15 97,143,578 (GRCm39) nonsense probably null
R0288:Amigo2 UTSW 15 97,143,560 (GRCm39) missense probably damaging 1.00
R0377:Amigo2 UTSW 15 97,144,261 (GRCm39) missense possibly damaging 0.93
R0696:Amigo2 UTSW 15 97,143,855 (GRCm39) missense probably benign 0.00
R1188:Amigo2 UTSW 15 97,143,594 (GRCm39) missense probably benign 0.37
R1639:Amigo2 UTSW 15 97,143,879 (GRCm39) missense probably benign 0.10
R3076:Amigo2 UTSW 15 97,143,315 (GRCm39) missense probably damaging 0.98
R3837:Amigo2 UTSW 15 97,143,196 (GRCm39) missense probably damaging 0.99
R5196:Amigo2 UTSW 15 97,143,942 (GRCm39) missense probably damaging 1.00
R5698:Amigo2 UTSW 15 97,143,607 (GRCm39) nonsense probably null
R6191:Amigo2 UTSW 15 97,143,419 (GRCm39) missense probably benign 0.42
R6326:Amigo2 UTSW 15 97,143,256 (GRCm39) missense probably benign 0.00
R6738:Amigo2 UTSW 15 97,143,345 (GRCm39) missense possibly damaging 0.82
R7102:Amigo2 UTSW 15 97,143,741 (GRCm39) missense probably damaging 1.00
R7253:Amigo2 UTSW 15 97,142,956 (GRCm39) missense probably benign 0.03
R7615:Amigo2 UTSW 15 97,143,223 (GRCm39) missense probably damaging 1.00
R8269:Amigo2 UTSW 15 97,144,112 (GRCm39) missense possibly damaging 0.84
R8304:Amigo2 UTSW 15 97,144,038 (GRCm39) missense probably damaging 1.00
R8333:Amigo2 UTSW 15 97,143,166 (GRCm39) missense probably damaging 1.00
R8888:Amigo2 UTSW 15 97,143,389 (GRCm39) missense probably damaging 1.00
R8895:Amigo2 UTSW 15 97,143,389 (GRCm39) missense probably damaging 1.00
X0018:Amigo2 UTSW 15 97,143,774 (GRCm39) missense probably damaging 0.97
Predicted Primers PCR Primer
(F):5'- CACAGGCGACAGGTATAGTC -3'
(R):5'- TGAAGTCGGTAAAGAGTGCCAC -3'

Sequencing Primer
(F):5'- GAGCTAAAGTGCCTACGGTACC -3'
(R):5'- GTCGGTAAAGAGTGCCACATTCC -3'
Posted On 2015-07-06