Mutagenetix > Incidental Mutation

Incidental Mutation 'R0012:Gpd2'

32526

Institutional Source

Beutler Lab

Gene Symbol

Gpd2

Ensembl Gene

ENSMUSG00000026827

Gene Name

glycerol phosphate dehydrogenase 2, mitochondrial

Synonyms

Gdm1

MMRRC Submission

038307-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.647) question?

Stock #

R0012 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

57127690-57260731 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 57228880 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 228 (M228K)

Ref Sequence

ENSEMBL: ENSMUSP00000108237 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028167] [ENSMUST00000112618] [ENSMUST00000169687]

AlphaFold

Q64521

Predicted Effect

probably damaging
Transcript: ENSMUST00000028167
AA Change: M228K

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000028167
Gene: ENSMUSG00000026827
AA Change: M228K

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
Pfam:FAD_binding_2	71	145	5.2e-7	PFAM
Pfam:FAD_oxidored	71	147	2.3e-9	PFAM
Pfam:DAO	71	441	8.9e-52	PFAM
EFh	627	655	1.38e1	SMART
EFh	663	691	1.27e-3	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000112618
AA Change: M228K

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000108237
Gene: ENSMUSG00000026827
AA Change: M228K

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
Pfam:FAD_binding_2	71	143	4.6e-7	PFAM
Pfam:DAO	71	441	2.9e-50	PFAM
Pfam:DAO_C	462	588	2.1e-42	PFAM
EFh	645	673	1.38e1	SMART
EFh	681	709	1.27e-3	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141536

Predicted Effect

probably damaging
Transcript: ENSMUST00000169687
AA Change: M228K

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000130992
Gene: ENSMUSG00000026827
AA Change: M228K

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
Pfam:FAD_binding_2	71	145	5.2e-7	PFAM
Pfam:FAD_oxidored	71	147	2.3e-9	PFAM
Pfam:DAO	71	441	8.9e-52	PFAM
EFh	627	655	1.38e1	SMART
EFh	663	691	1.27e-3	SMART

Meta Mutation Damage Score

0.9678

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.3%
20x: 95.7%

Validation Efficiency

98% (81/83)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene localizes to the inner mitochondrial membrane and catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate, using FAD as a cofactor. Along with GDP1, the encoded protein constitutes the glycerol phosphate shuttle, which reoxidizes NADH formed during glycolysis. Two transcript variants encoding the same protein have been found for this gene.[provided by RefSeq, Jan 2010]
PHENOTYPE: Homozygotes for targeted null mutations exhibit diminished hepatic ATP levels, decreased adiposity and fasting blood glucose, and, on an inbred background, reductions in preweaning viability and fertility. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam33	A	T	2: 130,894,840 (GRCm39)	L687Q	probably damaging	Het
Adap1	A	G	5: 139,293,489 (GRCm39)		probably benign	Het
Add2	T	A	6: 86,075,610 (GRCm39)	V253E	probably damaging	Het
Agtr1a	A	T	13: 30,565,732 (GRCm39)	I266F	probably damaging	Het
Anxa9	A	G	3: 95,215,406 (GRCm39)		probably benign	Het
Arap2	G	A	5: 62,840,827 (GRCm39)	L680F	probably damaging	Het
Bnip3	A	G	7: 138,500,401 (GRCm39)		probably benign	Het
Brwd1	A	C	16: 95,860,852 (GRCm39)	S311R	probably damaging	Het
C2cd3	G	A	7: 100,067,729 (GRCm39)	V871M	possibly damaging	Het
Cacul1	A	G	19: 60,552,691 (GRCm39)	W145R	probably damaging	Het
Celf5	C	A	10: 81,305,346 (GRCm39)	V141L	probably damaging	Het
Cfap206	C	A	4: 34,714,519 (GRCm39)	L392F	possibly damaging	Het
Chd2	G	T	7: 73,105,267 (GRCm39)	T192K	probably damaging	Het
Chrna10	T	C	7: 101,764,264 (GRCm39)	N40S	possibly damaging	Het
Cic	T	A	7: 24,986,565 (GRCm39)	S1299T	probably damaging	Het
Cic	C	A	7: 24,986,566 (GRCm39)	S1299Y	probably damaging	Het
Clspn	T	A	4: 126,458,722 (GRCm39)		probably benign	Het
Clstn1	G	A	4: 149,719,253 (GRCm39)	V361M	probably damaging	Het
Col5a3	A	T	9: 20,688,404 (GRCm39)		probably benign	Het
Copb1	T	A	7: 113,836,643 (GRCm39)	K366N	probably damaging	Het
Cul9	G	A	17: 46,849,436 (GRCm39)	R570C	probably benign	Het
Cyp2c70	A	T	19: 40,175,687 (GRCm39)	L7Q	probably null	Het
Dock2	T	C	11: 34,674,622 (GRCm39)	E10G	possibly damaging	Het
Dpysl4	T	G	7: 138,677,799 (GRCm39)	I412S	probably benign	Het
Eaf2	T	A	16: 36,628,536 (GRCm39)		probably benign	Het
Fasl	T	C	1: 161,615,733 (GRCm39)	D41G	probably benign	Het
Fat2	A	G	11: 55,153,697 (GRCm39)	V3505A	probably benign	Het
Fbxo24	A	G	5: 137,620,256 (GRCm39)	F101S	probably damaging	Het
Fdft1	T	C	14: 63,415,147 (GRCm39)	I28M	probably benign	Het
Gcnt3	T	C	9: 69,941,367 (GRCm39)	I400M	probably benign	Het
Get3	T	C	8: 85,751,725 (GRCm39)		probably benign	Het
Gsap	T	A	5: 21,431,227 (GRCm39)		probably benign	Het
Hipk1	A	G	3: 103,670,996 (GRCm39)	M467T	probably damaging	Het
Hmgb4	T	A	4: 128,154,518 (GRCm39)	I17F	probably damaging	Het
Ints10	C	A	8: 69,260,127 (GRCm39)	L284M	probably benign	Het
Kif17	T	G	4: 138,021,059 (GRCm39)	S606A	probably damaging	Het
Lifr	C	A	15: 7,205,089 (GRCm39)	T442K	possibly damaging	Het
Lypd4	A	G	7: 24,564,757 (GRCm39)	L127P	probably damaging	Het
Lyst	A	G	13: 13,862,279 (GRCm39)	H2605R	probably benign	Het
Map3k4	A	G	17: 12,457,076 (GRCm39)	S1289P	probably damaging	Het
Mgam	T	A	6: 40,742,190 (GRCm39)		probably null	Het
Mob1b	G	A	5: 88,903,943 (GRCm39)		probably benign	Het
Mrgpra1	A	G	7: 46,985,218 (GRCm39)	S154P	probably damaging	Het
Ms4a4c	C	A	19: 11,396,344 (GRCm39)		probably benign	Het
Mthfd2l	A	T	5: 91,109,242 (GRCm39)	H224L	probably damaging	Het
Myh8	T	C	11: 67,190,847 (GRCm39)	Y1350H	probably benign	Het
Nectin2	T	C	7: 19,464,669 (GRCm39)		probably benign	Het
Nos1	A	C	5: 118,031,967 (GRCm39)	N305T	probably damaging	Het
Ogfrl1	T	A	1: 23,409,206 (GRCm39)	Q340L	possibly damaging	Het
Or2aj5	T	C	16: 19,425,190 (GRCm39)	N76S	probably benign	Het
Or4f62	A	T	2: 111,987,171 (GRCm39)	N292Y	possibly damaging	Het
Or6k14	T	G	1: 173,927,773 (GRCm39)	F250V	probably damaging	Het
Or9i1	C	A	19: 13,839,187 (GRCm39)	T10K	probably damaging	Het
Orc1	T	C	4: 108,452,843 (GRCm39)		probably null	Het
Plekhg5	C	A	4: 152,189,207 (GRCm39)	D249E	probably benign	Het
Plet1	A	G	9: 50,410,430 (GRCm39)	I74V	probably benign	Het
Psmd2	T	A	16: 20,480,434 (GRCm39)	D718E	probably damaging	Het
Rab33b	G	T	3: 51,391,737 (GRCm39)		probably benign	Het
Rae1	T	A	2: 172,844,466 (GRCm39)	F4I	unknown	Het
Ralgapa2	A	G	2: 146,254,672 (GRCm39)	Y821H	probably benign	Het
Scd2	G	A	19: 44,289,685 (GRCm39)	V227I	probably benign	Het
Sharpin	G	T	15: 76,232,543 (GRCm39)	P156T	possibly damaging	Het
Slc38a4	C	T	15: 96,897,510 (GRCm39)	R435H	probably damaging	Het
Snrnp200	T	C	2: 127,070,469 (GRCm39)	V1061A	probably benign	Het
Suclg1	A	G	6: 73,247,980 (GRCm39)	T234A	possibly damaging	Het
Swsap1	T	C	9: 21,868,318 (GRCm39)	C197R	probably benign	Het
Tbx15	A	G	3: 99,259,412 (GRCm39)	T428A	probably benign	Het
Tet2	T	C	3: 133,182,319 (GRCm39)	Y1215C	probably damaging	Het
Tjp1	A	G	7: 64,979,523 (GRCm39)		probably benign	Het
Tmem209	G	T	6: 30,502,112 (GRCm39)		probably benign	Het
Tnpo3	T	C	6: 29,589,176 (GRCm39)	E58G	probably damaging	Het
Trp53bp2	T	A	1: 182,272,283 (GRCm39)	M464K	probably damaging	Het
Ttc32	A	G	12: 9,085,897 (GRCm39)	Y148C	possibly damaging	Het
Unc80	T	C	1: 66,546,550 (GRCm39)	S541P	probably damaging	Het
Ushbp1	T	C	8: 71,847,684 (GRCm39)		probably benign	Het
Vmn2r100	A	G	17: 19,725,136 (GRCm39)	M22V	probably benign	Het
Vmn2r100	A	T	17: 19,746,296 (GRCm39)	E485V	probably damaging	Het
Wdr24	G	A	17: 26,046,087 (GRCm39)	V471I	probably benign	Het
Zfp35	T	A	18: 24,136,001 (GRCm39)	M115K	probably benign	Het
Zfp429	G	A	13: 67,538,796 (GRCm39)	S216L	probably benign	Het
Zfp644	T	G	5: 106,782,909 (GRCm39)	E1155A	probably benign	Het

Other mutations in Gpd2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00946:Gpd2	APN	2	57,158,096 (GRCm39)	critical splice donor site	probably null
IGL01012:Gpd2	APN	2	57,254,542 (GRCm39)	missense	probably benign	0.00
IGL01096:Gpd2	APN	2	57,228,879 (GRCm39)	missense	probably damaging	0.98
IGL01642:Gpd2	APN	2	57,158,083 (GRCm39)	nonsense	probably null
IGL01816:Gpd2	APN	2	57,254,078 (GRCm39)	nonsense	probably null
IGL02257:Gpd2	APN	2	57,254,536 (GRCm39)	missense	probably benign	0.01
IGL02824:Gpd2	APN	2	57,254,339 (GRCm39)	missense	probably null	0.89
IGL02832:Gpd2	APN	2	57,228,991 (GRCm39)	missense	probably damaging	1.00
IGL03040:Gpd2	APN	2	57,245,805 (GRCm39)	missense	probably benign	0.06
IGL03107:Gpd2	APN	2	57,245,581 (GRCm39)	missense	probably damaging	1.00
IGL03131:Gpd2	APN	2	57,228,855 (GRCm39)	splice site	probably benign
IGL03218:Gpd2	APN	2	57,197,066 (GRCm39)	missense	probably damaging	1.00
IGL03226:Gpd2	APN	2	57,194,498 (GRCm39)	critical splice donor site	probably null
IGL03372:Gpd2	APN	2	57,245,519 (GRCm39)	missense	probably damaging	1.00
R0285:Gpd2	UTSW	2	57,228,967 (GRCm39)	missense	probably benign	0.16
R0379:Gpd2	UTSW	2	57,235,275 (GRCm39)	missense	probably damaging	1.00
R0401:Gpd2	UTSW	2	57,230,105 (GRCm39)	missense	possibly damaging	0.94
R1347:Gpd2	UTSW	2	57,247,683 (GRCm39)	missense	probably damaging	0.99
R1347:Gpd2	UTSW	2	57,247,683 (GRCm39)	missense	probably damaging	0.99
R1468:Gpd2	UTSW	2	57,245,786 (GRCm39)	missense	probably damaging	1.00
R1468:Gpd2	UTSW	2	57,245,786 (GRCm39)	missense	probably damaging	1.00
R1490:Gpd2	UTSW	2	57,245,487 (GRCm39)	missense	probably damaging	1.00
R1672:Gpd2	UTSW	2	57,247,712 (GRCm39)	missense	probably damaging	0.97
R1709:Gpd2	UTSW	2	57,247,667 (GRCm39)	missense	probably damaging	1.00
R1735:Gpd2	UTSW	2	57,245,563 (GRCm39)	missense	probably damaging	1.00
R2056:Gpd2	UTSW	2	57,229,025 (GRCm39)	critical splice donor site	probably null
R2959:Gpd2	UTSW	2	57,228,987 (GRCm39)	nonsense	probably null
R2960:Gpd2	UTSW	2	57,228,987 (GRCm39)	nonsense	probably null
R2961:Gpd2	UTSW	2	57,228,987 (GRCm39)	nonsense	probably null
R2962:Gpd2	UTSW	2	57,228,987 (GRCm39)	nonsense	probably null
R3008:Gpd2	UTSW	2	57,228,987 (GRCm39)	nonsense	probably null
R3009:Gpd2	UTSW	2	57,228,987 (GRCm39)	nonsense	probably null
R3881:Gpd2	UTSW	2	57,228,987 (GRCm39)	nonsense	probably null
R4073:Gpd2	UTSW	2	57,180,025 (GRCm39)	missense	probably damaging	1.00
R4153:Gpd2	UTSW	2	57,245,783 (GRCm39)	missense	probably damaging	1.00
R4564:Gpd2	UTSW	2	57,197,095 (GRCm39)	missense	possibly damaging	0.77
R4952:Gpd2	UTSW	2	57,197,025 (GRCm39)	nonsense	probably null
R5030:Gpd2	UTSW	2	57,194,417 (GRCm39)	missense	probably damaging	0.98
R5101:Gpd2	UTSW	2	57,245,913 (GRCm39)	missense	probably damaging	1.00
R5185:Gpd2	UTSW	2	57,230,216 (GRCm39)	missense	probably damaging	1.00
R6020:Gpd2	UTSW	2	57,254,525 (GRCm39)	missense	probably benign	0.18
R6325:Gpd2	UTSW	2	57,194,408 (GRCm39)	missense	probably damaging	0.96
R6536:Gpd2	UTSW	2	57,235,367 (GRCm39)	missense	probably benign	0.40
R6923:Gpd2	UTSW	2	57,245,800 (GRCm39)	missense	probably damaging	0.98
R7058:Gpd2	UTSW	2	57,197,112 (GRCm39)	splice site	probably null
R7380:Gpd2	UTSW	2	57,230,171 (GRCm39)	missense	probably damaging	1.00
R8052:Gpd2	UTSW	2	57,196,962 (GRCm39)	nonsense	probably null
R8098:Gpd2	UTSW	2	57,180,020 (GRCm39)	missense	possibly damaging	0.94
R8467:Gpd2	UTSW	2	57,254,596 (GRCm39)	missense	possibly damaging	0.95
R8851:Gpd2	UTSW	2	57,197,062 (GRCm39)	missense	possibly damaging	0.62
R9515:Gpd2	UTSW	2	57,195,866 (GRCm39)	missense	possibly damaging	0.78

Predicted Primers

PCR Primer
(F):5'- CCCGAGGATGACCACATATTTCCAG -3'
(R):5'- AGCCAGGCATTGTTGACTGTAAGG -3'

Sequencing Primer
(F):5'- GACAGGGACAGATGTGACAT -3'
(R):5'- AGATGACTGAAGTCTGCCTTTCAC -3'

Posted On

2013-05-09