Mutagenetix > Incidental Mutation

Incidental Mutation 'R4392:Sptbn4'

326409

Institutional Source

Beutler Lab

Gene Symbol

Sptbn4

Ensembl Gene

ENSMUSG00000011751

Gene Name

spectrin beta, non-erythrocytic 4

Synonyms

ROSA62, 1700022P15Rik, dyn, neuroaxonal dystrophy, 5830426A08Rik, nmf261, SpbIV, Spnb4

MMRRC Submission

041127-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.464) question?

Stock #

R4392 (G1)

Quality Score

220

Status

Validated

Chromosome

Chromosomal Location

27356383-27447686 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 27418471 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 369 (N369S)

Ref Sequence

ENSEMBL: ENSMUSP00000011895 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000011895] [ENSMUST00000172269]

AlphaFold

E9PX29

Predicted Effect

probably damaging
Transcript: ENSMUST00000011895
AA Change: N369S

PolyPhen 2 Score 0.973 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000011895
Gene: ENSMUSG00000011751
AA Change: N369S

Domain	Start	End	E-Value	Type
low complexity region	39	45	N/A	INTRINSIC
CH	64	164	8.03e-24	SMART
CH	183	281	7.38e-23	SMART
Pfam:Spectrin	310	420	1.4e-10	PFAM
SPEC	433	533	5.22e-26	SMART
SPEC	539	642	7.62e-19	SMART
SPEC	648	766	1.31e-8	SMART
SPEC	772	874	2.94e-11	SMART
SPEC	880	980	1.49e-21	SMART
SPEC	986	1081	1.65e0	SMART
SPEC	1087	1192	2.82e-13	SMART
SPEC	1198	1298	6.59e-14	SMART
SPEC	1304	1403	4.08e-19	SMART
SPEC	1409	1508	5.92e-7	SMART
SPEC	1514	1614	2.45e-22	SMART
SPEC	1620	1720	1.45e-24	SMART
SPEC	1726	1827	1.86e-22	SMART
SPEC	1833	1935	9.54e-11	SMART
SPEC	1941	2041	1.35e-19	SMART
SPEC	2047	2297	1.06e-8	SMART
low complexity region	2358	2412	N/A	INTRINSIC
PH	2416	2526	1.54e-14	SMART
low complexity region	2549	2560	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000172269
AA Change: N369S

PolyPhen 2 Score 0.576 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000132807
Gene: ENSMUSG00000011751
AA Change: N369S

Domain	Start	End	E-Value	Type
low complexity region	39	45	N/A	INTRINSIC
CH	64	164	8.03e-24	SMART
CH	183	281	7.38e-23	SMART
Pfam:Spectrin	310	420	1.9e-10	PFAM
SPEC	433	533	5.22e-26	SMART
SPEC	539	637	3.45e-17	SMART
SPEC	643	761	1.31e-8	SMART
SPEC	767	869	2.94e-11	SMART
SPEC	875	975	1.49e-21	SMART
SPEC	981	1076	1.65e0	SMART
SPEC	1082	1187	2.82e-13	SMART
SPEC	1193	1293	6.59e-14	SMART
SPEC	1299	1398	4.08e-19	SMART
SPEC	1404	1503	5.92e-7	SMART
SPEC	1509	1609	2.45e-22	SMART
SPEC	1615	1715	1.45e-24	SMART
SPEC	1721	1822	1.86e-22	SMART
SPEC	1828	1930	9.54e-11	SMART
SPEC	1936	2036	1.35e-19	SMART
SPEC	2042	2292	1.06e-8	SMART
low complexity region	2352	2406	N/A	INTRINSIC
PH	2410	2520	1.54e-14	SMART
low complexity region	2543	2554	N/A	INTRINSIC

Meta Mutation Damage Score

0.1230

Coding Region Coverage

1x: 99.5%
3x: 98.5%
10x: 96.1%
20x: 90.5%

Validation Efficiency

95% (69/73)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Spectrin is an actin crosslinking and molecular scaffold protein that links the plasma membrane to the actin cytoskeleton, and functions in the determination of cell shape, arrangement of transmembrane proteins, and organization of organelles. It is composed of two antiparallel dimers of alpha- and beta- subunits. This gene is one member of a family of beta-spectrin genes. The encoded protein localizes to the nuclear matrix, PML nuclear bodies, and cytoplasmic vesicles. A highly similar gene in the mouse is required for localization of specific membrane proteins in polarized regions of neurons. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygotes for spontaneous mutations exhibit tremors, progressive ataxia with hind limb paralysis, central deafness, reduced body weight, and shortened lifespan. Males are sterile, but females may breed. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4931414P19Rik	C	T	14: 54,584,978 (GRCm38)		probably null	Het
Abca13	A	C	11: 9,309,034 (GRCm38)	K2920T	possibly damaging	Het
Amy2b	T	G	3: 113,149,408 (GRCm38)		noncoding transcript	Het
Anapc1	T	C	2: 128,676,249 (GRCm38)		probably null	Het
Bmp7	T	G	2: 172,916,542 (GRCm38)	D178A	probably benign	Het
Brsk1	T	A	7: 4,698,750 (GRCm38)	I170N	probably damaging	Het
Bub3	C	T	7: 131,566,335 (GRCm38)	A187V	probably benign	Het
Cacna2d2	A	G	9: 107,400,280 (GRCm38)	H71R	possibly damaging	Het
Cdrt4	A	T	11: 62,951,353 (GRCm38)	K20N	probably benign	Het
Clec12a	A	T	6: 129,353,464 (GRCm38)		probably benign	Het
Col12a1	T	A	9: 79,662,488 (GRCm38)	Y1600F	probably damaging	Het
Cyp2a12	T	A	7: 27,029,275 (GRCm38)	I57N	probably damaging	Het
Dip2b	T	C	15: 100,162,036 (GRCm38)	L223P	probably damaging	Het
Dnah5	G	A	15: 28,289,229 (GRCm38)	R1188H	probably benign	Het
Dopey1	T	C	9: 86,503,143 (GRCm38)		probably benign	Het
Efcab5	T	A	11: 77,090,458 (GRCm38)	N1354I	probably damaging	Het
Eif4b	T	A	15: 102,086,641 (GRCm38)		probably null	Het
Elmsan1	A	T	12: 84,173,111 (GRCm38)	D356E	probably benign	Het
Erlec1	A	G	11: 30,943,697 (GRCm38)		probably null	Het
Esp24	T	C	17: 39,040,077 (GRCm38)		probably benign	Het
Esp34	T	C	17: 38,559,491 (GRCm38)	V24A	possibly damaging	Het
Fbxw15	T	A	9: 109,568,232 (GRCm38)		probably benign	Het
Foxc2	T	C	8: 121,117,452 (GRCm38)	S280P	probably damaging	Het
Gm21738	G	C	14: 19,417,178 (GRCm38)	L117V	probably benign	Het
Grk3	A	G	5: 112,920,136 (GRCm38)	F467S	probably damaging	Het
Grwd1	C	T	7: 45,827,780 (GRCm38)	G228S	probably damaging	Het
Gtf2i	T	C	5: 134,260,629 (GRCm38)	E399G	probably damaging	Het
Hjurp	GT	GTT	1: 88,266,524 (GRCm38)		probably null	Het
Homer3	G	A	8: 70,290,143 (GRCm38)		probably null	Het
Lhx4	A	G	1: 155,710,134 (GRCm38)	Y83H	probably damaging	Het
Mdga1	T	C	17: 29,850,656 (GRCm38)	T413A	probably damaging	Het
Mmrn2	T	A	14: 34,397,616 (GRCm38)	L184H	probably damaging	Het
Mroh2a	C	T	1: 88,259,589 (GRCm38)	R133C	probably damaging	Het
Myh13	A	C	11: 67,344,881 (GRCm38)		probably null	Het
Nkain3	C	A	4: 20,282,985 (GRCm38)	R116L	possibly damaging	Het
Nxph2	A	C	2: 23,400,272 (GRCm38)	Q212P	probably damaging	Het
Olfr268-ps1	T	C	2: 111,844,345 (GRCm38)		noncoding transcript	Het
Olfr726	A	G	14: 50,084,603 (GRCm38)	F26S	probably benign	Het
Otog	T	C	7: 46,285,124 (GRCm38)	Y1369H	probably damaging	Het
Prl	A	G	13: 27,064,351 (GRCm38)	I131V	possibly damaging	Het
Ptprg	A	T	14: 12,142,467 (GRCm38)	I373F	possibly damaging	Het
Rad18	A	T	6: 112,693,529 (GRCm38)	C25S	probably damaging	Het
Rgs12	A	G	5: 35,032,311 (GRCm38)	T678A	probably damaging	Het
Scaper	T	A	9: 55,858,115 (GRCm38)	E557V	probably damaging	Het
Scube3	C	T	17: 28,164,788 (GRCm38)	P511L	probably null	Het
Sgpl1	A	G	10: 61,104,452 (GRCm38)		probably benign	Het
Slc10a1	C	A	12: 80,967,804 (GRCm38)	E47D	probably damaging	Het
Sstr5	T	C	17: 25,491,224 (GRCm38)	T344A	probably benign	Het
Tgm4	C	T	9: 123,066,752 (GRCm38)	T631I	probably benign	Het
Tmprss15	A	G	16: 79,024,438 (GRCm38)	Y457H	probably damaging	Het
Trpm7	A	T	2: 126,848,538 (GRCm38)	W207R	probably damaging	Het
Trpm7	A	T	2: 126,795,509 (GRCm38)		probably null	Het
Ttc26	A	G	6: 38,381,557 (GRCm38)		probably benign	Het
Ugt1a1	CAGAGAGAGAGAGA	CAGAGAGAGAGA	1: 88,211,984 (GRCm38)		probably benign	Het
Ugt1a10	C	T	1: 88,215,123 (GRCm38)	P113L	probably damaging	Het
Usp2	A	T	9: 44,091,259 (GRCm38)	H384L	probably damaging	Het
Vmn2r27	C	T	6: 124,230,176 (GRCm38)	V169I	probably benign	Het
Vopp1	A	C	6: 57,762,476 (GRCm38)	F29C	probably damaging	Het
Wrn	T	C	8: 33,251,832 (GRCm38)	D953G	probably damaging	Het
Zfp759	T	A	13: 67,139,643 (GRCm38)	C419*	probably null	Het

Other mutations in Sptbn4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00096:Sptbn4	APN	7	27,369,434 (GRCm38)	missense	probably damaging	1.00
IGL00468:Sptbn4	APN	7	27,417,965 (GRCm38)	missense	probably damaging	1.00
IGL01396:Sptbn4	APN	7	27,414,771 (GRCm38)	missense	probably benign	0.06
IGL01700:Sptbn4	APN	7	27,404,268 (GRCm38)	missense	probably damaging	1.00
IGL01878:Sptbn4	APN	7	27,364,146 (GRCm38)	missense	probably damaging	0.99
IGL02066:Sptbn4	APN	7	27,364,515 (GRCm38)	missense	possibly damaging	0.68
IGL02116:Sptbn4	APN	7	27,364,357 (GRCm38)	missense	probably benign
IGL02226:Sptbn4	APN	7	27,365,707 (GRCm38)	missense	probably damaging	1.00
IGL02333:Sptbn4	APN	7	27,364,299 (GRCm38)	missense	probably damaging	1.00
IGL02337:Sptbn4	APN	7	27,428,247 (GRCm38)	missense	probably benign	0.03
IGL02451:Sptbn4	APN	7	27,365,589 (GRCm38)	missense	probably null	0.15
IGL02487:Sptbn4	APN	7	27,419,097 (GRCm38)	missense	probably damaging	1.00
IGL02530:Sptbn4	APN	7	27,391,551 (GRCm38)	missense	probably damaging	1.00
IGL02724:Sptbn4	APN	7	27,367,679 (GRCm38)	missense	probably damaging	1.00
IGL02850:Sptbn4	APN	7	27,426,833 (GRCm38)	missense	possibly damaging	0.95
IGL02851:Sptbn4	APN	7	27,426,833 (GRCm38)	missense	possibly damaging	0.95
IGL02869:Sptbn4	APN	7	27,394,148 (GRCm38)	splice site	probably benign
IGL02961:Sptbn4	APN	7	27,397,967 (GRCm38)	missense	probably damaging	1.00
ANU22:Sptbn4	UTSW	7	27,357,387 (GRCm38)	nonsense	probably null
R0194:Sptbn4	UTSW	7	27,404,911 (GRCm38)	missense	probably benign	0.00
R0328:Sptbn4	UTSW	7	27,364,170 (GRCm38)	missense	probably damaging	1.00
R0379:Sptbn4	UTSW	7	27,359,736 (GRCm38)	splice site	probably benign
R0510:Sptbn4	UTSW	7	27,361,566 (GRCm38)	critical splice donor site	probably null
R0550:Sptbn4	UTSW	7	27,364,378 (GRCm38)	missense	probably benign	0.16
R0557:Sptbn4	UTSW	7	27,408,328 (GRCm38)	nonsense	probably null
R1336:Sptbn4	UTSW	7	27,417,963 (GRCm38)	missense	probably damaging	1.00
R1494:Sptbn4	UTSW	7	27,434,294 (GRCm38)	missense	probably damaging	1.00
R1630:Sptbn4	UTSW	7	27,418,739 (GRCm38)	missense	probably benign	0.09
R1803:Sptbn4	UTSW	7	27,418,583 (GRCm38)	missense	probably damaging	1.00
R1834:Sptbn4	UTSW	7	27,366,646 (GRCm38)	missense	probably null	0.96
R1906:Sptbn4	UTSW	7	27,391,431 (GRCm38)	critical splice donor site	probably null
R1924:Sptbn4	UTSW	7	27,407,138 (GRCm38)	missense	probably damaging	1.00
R1951:Sptbn4	UTSW	7	27,366,443 (GRCm38)	missense	possibly damaging	0.64
R1989:Sptbn4	UTSW	7	27,367,702 (GRCm38)	missense	probably damaging	1.00
R1990:Sptbn4	UTSW	7	27,423,810 (GRCm38)	missense	probably benign	0.19
R2005:Sptbn4	UTSW	7	27,366,419 (GRCm38)	nonsense	probably null
R2083:Sptbn4	UTSW	7	27,428,256 (GRCm38)	missense	probably benign	0.29
R2176:Sptbn4	UTSW	7	27,364,162 (GRCm38)	missense	probably benign	0.21
R2211:Sptbn4	UTSW	7	27,367,609 (GRCm38)	missense	probably damaging	1.00
R2262:Sptbn4	UTSW	7	27,434,357 (GRCm38)	missense	probably damaging	1.00
R2263:Sptbn4	UTSW	7	27,434,357 (GRCm38)	missense	probably damaging	1.00
R2374:Sptbn4	UTSW	7	27,360,092 (GRCm38)	missense	probably damaging	0.99
R2407:Sptbn4	UTSW	7	27,418,098 (GRCm38)	nonsense	probably null
R4115:Sptbn4	UTSW	7	27,391,570 (GRCm38)	missense	probably damaging	1.00
R4116:Sptbn4	UTSW	7	27,391,570 (GRCm38)	missense	probably damaging	1.00
R4426:Sptbn4	UTSW	7	27,423,798 (GRCm38)	missense	probably damaging	1.00
R4535:Sptbn4	UTSW	7	27,367,702 (GRCm38)	missense	probably damaging	1.00
R4684:Sptbn4	UTSW	7	27,366,735 (GRCm38)	missense	possibly damaging	0.60
R4684:Sptbn4	UTSW	7	27,364,419 (GRCm38)	missense	probably damaging	0.96
R4707:Sptbn4	UTSW	7	27,417,006 (GRCm38)	missense	probably benign	0.12
R4876:Sptbn4	UTSW	7	27,372,152 (GRCm38)	missense	probably damaging	1.00
R5091:Sptbn4	UTSW	7	27,369,391 (GRCm38)	missense	probably damaging	1.00
R5371:Sptbn4	UTSW	7	27,359,741 (GRCm38)	critical splice donor site	probably null
R5790:Sptbn4	UTSW	7	27,366,428 (GRCm38)	missense	probably damaging	0.99
R5857:Sptbn4	UTSW	7	27,418,713 (GRCm38)	missense	possibly damaging	0.89
R5908:Sptbn4	UTSW	7	27,404,253 (GRCm38)	missense	probably benign	0.00
R5980:Sptbn4	UTSW	7	27,372,171 (GRCm38)	missense	probably damaging	1.00
R6005:Sptbn4	UTSW	7	27,418,599 (GRCm38)	missense	probably damaging	1.00
R6013:Sptbn4	UTSW	7	27,364,479 (GRCm38)	missense	probably damaging	0.99
R6037:Sptbn4	UTSW	7	27,364,170 (GRCm38)	missense	probably damaging	0.97
R6037:Sptbn4	UTSW	7	27,364,170 (GRCm38)	missense	probably damaging	0.97
R6129:Sptbn4	UTSW	7	27,360,088 (GRCm38)	missense	probably damaging	0.98
R6146:Sptbn4	UTSW	7	27,364,587 (GRCm38)	nonsense	probably null
R6762:Sptbn4	UTSW	7	27,394,208 (GRCm38)	missense	probably damaging	1.00
R6897:Sptbn4	UTSW	7	27,371,950 (GRCm38)	missense	possibly damaging	0.96
R7178:Sptbn4	UTSW	7	27,418,056 (GRCm38)	missense	probably damaging	1.00
R7212:Sptbn4	UTSW	7	27,416,785 (GRCm38)	missense	probably benign	0.44
R7465:Sptbn4	UTSW	7	27,366,689 (GRCm38)	missense	probably benign	0.00
R7471:Sptbn4	UTSW	7	27,409,014 (GRCm38)	missense	possibly damaging	0.64
R7510:Sptbn4	UTSW	7	27,428,268 (GRCm38)	missense	probably benign	0.13
R7527:Sptbn4	UTSW	7	27,375,590 (GRCm38)	missense	possibly damaging	0.94
R7528:Sptbn4	UTSW	7	27,442,535 (GRCm38)	missense	probably benign	0.00
R7572:Sptbn4	UTSW	7	27,372,272 (GRCm38)	missense	probably damaging	0.99
R7649:Sptbn4	UTSW	7	27,361,577 (GRCm38)	missense	possibly damaging	0.80
R7714:Sptbn4	UTSW	7	27,364,336 (GRCm38)	missense	probably benign	0.02
R7780:Sptbn4	UTSW	7	27,361,634 (GRCm38)	missense	possibly damaging	0.70
R7854:Sptbn4	UTSW	7	27,362,410 (GRCm38)	missense	probably benign
R8002:Sptbn4	UTSW	7	27,417,992 (GRCm38)	missense	possibly damaging	0.91
R8058:Sptbn4	UTSW	7	27,364,269 (GRCm38)	missense	possibly damaging	0.92
R8181:Sptbn4	UTSW	7	27,375,383 (GRCm38)	missense	possibly damaging	0.79
R8195:Sptbn4	UTSW	7	27,408,889 (GRCm38)	nonsense	probably null
R8353:Sptbn4	UTSW	7	27,404,238 (GRCm38)	missense	probably damaging	1.00
R8392:Sptbn4	UTSW	7	27,372,296 (GRCm38)	missense	probably damaging	1.00
R8453:Sptbn4	UTSW	7	27,404,238 (GRCm38)	missense	probably damaging	1.00
R8815:Sptbn4	UTSW	7	27,407,232 (GRCm38)	nonsense	probably null
R8818:Sptbn4	UTSW	7	27,364,167 (GRCm38)	missense	possibly damaging	0.71
R9171:Sptbn4	UTSW	7	27,442,419 (GRCm38)	missense	possibly damaging	0.95
R9259:Sptbn4	UTSW	7	27,367,699 (GRCm38)	missense	possibly damaging	0.74
R9477:Sptbn4	UTSW	7	27,433,199 (GRCm38)	missense	possibly damaging	0.79
R9564:Sptbn4	UTSW	7	27,418,079 (GRCm38)	missense	probably damaging	0.98
R9572:Sptbn4	UTSW	7	27,366,670 (GRCm38)	missense	probably benign	0.16
R9623:Sptbn4	UTSW	7	27,408,382 (GRCm38)	missense	probably damaging	1.00
R9715:Sptbn4	UTSW	7	27,391,575 (GRCm38)	missense	probably damaging	1.00
R9782:Sptbn4	UTSW	7	27,408,568 (GRCm38)	missense	probably benign	0.02
R9790:Sptbn4	UTSW	7	27,372,237 (GRCm38)	missense	probably damaging	0.99
R9791:Sptbn4	UTSW	7	27,372,237 (GRCm38)	missense	probably damaging	0.99
R9798:Sptbn4	UTSW	7	27,357,292 (GRCm38)	makesense	probably null
X0020:Sptbn4	UTSW	7	27,402,734 (GRCm38)	critical splice donor site	probably null
X0066:Sptbn4	UTSW	7	27,357,311 (GRCm38)	unclassified	probably benign
Z1176:Sptbn4	UTSW	7	27,360,025 (GRCm38)	missense	probably damaging	0.99
Z1177:Sptbn4	UTSW	7	27,409,102 (GRCm38)	missense	probably benign	0.41
Z1177:Sptbn4	UTSW	7	27,404,582 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AAACGCTGCCTCTTCATAAGTC -3'
(R):5'- TGCTAACTCACTGAGTGGGGTG -3'

Sequencing Primer
(F):5'- CTCTTCATAAGTCTACCACTGGAAG -3'
(R):5'- CTGAGTGGGGTGCAGCAG -3'

Posted On

2015-07-06