Incidental Mutation 'R4392:Homer3'
| ID |
326415 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Homer3
|
| Ensembl Gene |
ENSMUSG00000003573 |
| Gene Name |
homer scaffolding protein 3 |
| Synonyms |
|
| MMRRC Submission |
041127-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.202)
|
| Stock # |
R4392 (G1)
|
| Quality Score |
149 |
|
Status
|
Validated
|
| Chromosome |
8 |
| Chromosomal Location |
70282827-70294361 bp(+) (GRCm38) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
G to A
at 70290143 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000003669]
[ENSMUST00000008004]
[ENSMUST00000087467]
[ENSMUST00000110124]
[ENSMUST00000140212]
|
| AlphaFold |
Q99JP6 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000003669
AA Change: R168Q
PolyPhen 2
Score 0.919 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000003669
Gene: ENSMUSG00000003573
AA Change: R168Q
| Domain | Start | End | E-Value | Type |
|---|
|
WH1
|
4 |
110 |
4.92e-37 |
SMART |
|
low complexity region
|
198 |
210 |
N/A |
INTRINSIC |
|
PDB:3CVF|D
|
285 |
342 |
2e-10 |
PDB |
|
low complexity region
|
343 |
358 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000008004
|
| SMART Domains |
Protein: ENSMUSP00000008004
Gene: ENSMUSG00000057788
| Domain | Start | End | E-Value | Type |
|---|
|
DEXDc
|
21 |
222 |
1.85e-57 |
SMART |
|
HELICc
|
262 |
343 |
2.41e-29 |
SMART |
|
low complexity region
|
369 |
383 |
N/A |
INTRINSIC |
|
low complexity region
|
461 |
470 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000087467
|
| SMART Domains |
Protein: ENSMUSP00000084735
Gene: ENSMUSG00000003573
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:WH1
|
1 |
107 |
4.2e-36 |
PFAM |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000110124
AA Change: R168Q
PolyPhen 2
Score 0.919 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000105751
Gene: ENSMUSG00000003573
AA Change: R168Q
| Domain | Start | End | E-Value | Type |
|---|
|
WH1
|
4 |
110 |
4.92e-37 |
SMART |
|
low complexity region
|
198 |
210 |
N/A |
INTRINSIC |
|
PDB:3CVF|D
|
285 |
342 |
2e-10 |
PDB |
|
low complexity region
|
343 |
358 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000127094
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000135368
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000135692
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000140212
AA Change: R168Q
PolyPhen 2
Score 0.919 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000117033
Gene: ENSMUSG00000003573
AA Change: R168Q
| Domain | Start | End | E-Value | Type |
|---|
|
WH1
|
4 |
110 |
4.92e-37 |
SMART |
|
low complexity region
|
198 |
210 |
N/A |
INTRINSIC |
|
PDB:3CVF|D
|
282 |
339 |
2e-10 |
PDB |
|
low complexity region
|
340 |
355 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000143528
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000144890
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000155711
|
| Meta Mutation Damage Score |
0.3504 |
| Coding Region Coverage |
- 1x: 99.5%
- 3x: 98.5%
- 10x: 96.1%
- 20x: 90.5%
|
| Validation Efficiency |
95% (69/73) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the HOMER family of postsynaptic density scaffolding proteins that share a similar domain structure consisting of an N-terminal Enabled/vasodilator-stimulated phosphoprotein homology 1 domain which mediates protein-protein interactions, and a carboxy-terminal coiled-coil domain and two leucine zipper motifs that are involved in self-oligomerization. The encoded protein binds numerous other proteins including group I metabotropic glutamate receptors, inositol 1,4,5-trisphosphate receptors and amyloid precursor proteins and has been implicated in diverse biological functions such as neuronal signaling, T-cell activation and trafficking of amyloid beta peptides. Alternative splicing results in multiple transcript variants.[provided by RefSeq, Mar 2009]
PHENOTYPE: Homozygous mutants exhibit normal sensitivity to cocaine. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 60 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4931414P19Rik |
C |
T |
14: 54,584,978 (GRCm38) |
|
probably null |
Het |
| Abca13 |
A |
C |
11: 9,309,034 (GRCm38) |
K2920T |
possibly damaging |
Het |
| Amy2b |
T |
G |
3: 113,149,408 (GRCm38) |
|
noncoding transcript |
Het |
| Anapc1 |
T |
C |
2: 128,676,249 (GRCm38) |
|
probably null |
Het |
| Bmp7 |
T |
G |
2: 172,916,542 (GRCm38) |
D178A |
probably benign |
Het |
| Brsk1 |
T |
A |
7: 4,698,750 (GRCm38) |
I170N |
probably damaging |
Het |
| Bub3 |
C |
T |
7: 131,566,335 (GRCm38) |
A187V |
probably benign |
Het |
| Cacna2d2 |
A |
G |
9: 107,400,280 (GRCm38) |
H71R |
possibly damaging |
Het |
| Cdrt4 |
A |
T |
11: 62,951,353 (GRCm38) |
K20N |
probably benign |
Het |
| Clec12a |
A |
T |
6: 129,353,464 (GRCm38) |
|
probably benign |
Het |
| Col12a1 |
T |
A |
9: 79,662,488 (GRCm38) |
Y1600F |
probably damaging |
Het |
| Cyp2a12 |
T |
A |
7: 27,029,275 (GRCm38) |
I57N |
probably damaging |
Het |
| Dip2b |
T |
C |
15: 100,162,036 (GRCm38) |
L223P |
probably damaging |
Het |
| Dnah5 |
G |
A |
15: 28,289,229 (GRCm38) |
R1188H |
probably benign |
Het |
| Dop1a |
T |
C |
9: 86,503,143 (GRCm38) |
|
probably benign |
Het |
| Efcab5 |
T |
A |
11: 77,090,458 (GRCm38) |
N1354I |
probably damaging |
Het |
| Eif4b |
T |
A |
15: 102,086,641 (GRCm38) |
|
probably null |
Het |
| Erlec1 |
A |
G |
11: 30,943,697 (GRCm38) |
|
probably null |
Het |
| Esp24 |
T |
C |
17: 39,040,077 (GRCm38) |
|
probably benign |
Het |
| Esp34 |
T |
C |
17: 38,559,491 (GRCm38) |
V24A |
possibly damaging |
Het |
| Fbxw15 |
T |
A |
9: 109,568,232 (GRCm38) |
|
probably benign |
Het |
| Foxc2 |
T |
C |
8: 121,117,452 (GRCm38) |
S280P |
probably damaging |
Het |
| Gm21738 |
G |
C |
14: 19,417,178 (GRCm38) |
L117V |
probably benign |
Het |
| Grk3 |
A |
G |
5: 112,920,136 (GRCm38) |
F467S |
probably damaging |
Het |
| Grwd1 |
C |
T |
7: 45,827,780 (GRCm38) |
G228S |
probably damaging |
Het |
| Gtf2i |
T |
C |
5: 134,260,629 (GRCm38) |
E399G |
probably damaging |
Het |
| Hjurp |
GT |
GTT |
1: 88,266,524 (GRCm38) |
|
probably null |
Het |
| Ift56 |
A |
G |
6: 38,381,557 (GRCm38) |
|
probably benign |
Het |
| Lhx4 |
A |
G |
1: 155,710,134 (GRCm38) |
Y83H |
probably damaging |
Het |
| Mdga1 |
T |
C |
17: 29,850,656 (GRCm38) |
T413A |
probably damaging |
Het |
| Mideas |
A |
T |
12: 84,173,111 (GRCm38) |
D356E |
probably benign |
Het |
| Mmrn2 |
T |
A |
14: 34,397,616 (GRCm38) |
L184H |
probably damaging |
Het |
| Mroh2a |
C |
T |
1: 88,259,589 (GRCm38) |
R133C |
probably damaging |
Het |
| Myh13 |
A |
C |
11: 67,344,881 (GRCm38) |
|
probably null |
Het |
| Nkain3 |
C |
A |
4: 20,282,985 (GRCm38) |
R116L |
possibly damaging |
Het |
| Nxph2 |
A |
C |
2: 23,400,272 (GRCm38) |
Q212P |
probably damaging |
Het |
| Or4f7d-ps1 |
T |
C |
2: 111,844,345 (GRCm38) |
|
noncoding transcript |
Het |
| Or4k15c |
A |
G |
14: 50,084,603 (GRCm38) |
F26S |
probably benign |
Het |
| Otog |
T |
C |
7: 46,285,124 (GRCm38) |
Y1369H |
probably damaging |
Het |
| Prl |
A |
G |
13: 27,064,351 (GRCm38) |
I131V |
possibly damaging |
Het |
| Ptprg |
A |
T |
14: 12,142,467 (GRCm38) |
I373F |
possibly damaging |
Het |
| Rad18 |
A |
T |
6: 112,693,529 (GRCm38) |
C25S |
probably damaging |
Het |
| Rgs12 |
A |
G |
5: 35,032,311 (GRCm38) |
T678A |
probably damaging |
Het |
| Scaper |
T |
A |
9: 55,858,115 (GRCm38) |
E557V |
probably damaging |
Het |
| Scube3 |
C |
T |
17: 28,164,788 (GRCm38) |
P511L |
probably null |
Het |
| Sgpl1 |
A |
G |
10: 61,104,452 (GRCm38) |
|
probably benign |
Het |
| Slc10a1 |
C |
A |
12: 80,967,804 (GRCm38) |
E47D |
probably damaging |
Het |
| Sptbn4 |
T |
C |
7: 27,418,471 (GRCm38) |
N369S |
probably damaging |
Het |
| Sstr5 |
T |
C |
17: 25,491,224 (GRCm38) |
T344A |
probably benign |
Het |
| Tgm4 |
C |
T |
9: 123,066,752 (GRCm38) |
T631I |
probably benign |
Het |
| Tmprss15 |
A |
G |
16: 79,024,438 (GRCm38) |
Y457H |
probably damaging |
Het |
| Trpm7 |
A |
T |
2: 126,848,538 (GRCm38) |
W207R |
probably damaging |
Het |
| Trpm7 |
A |
T |
2: 126,795,509 (GRCm38) |
|
probably null |
Het |
| Ugt1a1 |
CAGAGAGAGAGAGA |
CAGAGAGAGAGA |
1: 88,211,984 (GRCm38) |
|
probably benign |
Het |
| Ugt1a10 |
C |
T |
1: 88,215,123 (GRCm38) |
P113L |
probably damaging |
Het |
| Usp2 |
A |
T |
9: 44,091,259 (GRCm38) |
H384L |
probably damaging |
Het |
| Vmn2r27 |
C |
T |
6: 124,230,176 (GRCm38) |
V169I |
probably benign |
Het |
| Vopp1 |
A |
C |
6: 57,762,476 (GRCm38) |
F29C |
probably damaging |
Het |
| Wrn |
T |
C |
8: 33,251,832 (GRCm38) |
D953G |
probably damaging |
Het |
| Zfp759 |
T |
A |
13: 67,139,643 (GRCm38) |
C419* |
probably null |
Het |
|
| Other mutations in Homer3 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01966:Homer3
|
APN |
8 |
70,290,157 (GRCm38) |
missense |
probably damaging |
0.96 |
|
IGL02493:Homer3
|
APN |
8 |
70,290,071 (GRCm38) |
missense |
probably benign |
0.00 |
|
IGL03134:Homer3
|
UTSW |
8 |
70,286,335 (GRCm38) |
missense |
probably benign |
0.00 |
|
R2436:Homer3
|
UTSW |
8 |
70,293,056 (GRCm38) |
missense |
possibly damaging |
0.91 |
|
R3508:Homer3
|
UTSW |
8 |
70,291,355 (GRCm38) |
missense |
probably benign |
0.06 |
|
R4391:Homer3
|
UTSW |
8 |
70,290,143 (GRCm38) |
splice site |
probably null |
|
|
R4395:Homer3
|
UTSW |
8 |
70,290,143 (GRCm38) |
splice site |
probably null |
|
|
R4396:Homer3
|
UTSW |
8 |
70,290,143 (GRCm38) |
splice site |
probably null |
|
|
R4397:Homer3
|
UTSW |
8 |
70,290,143 (GRCm38) |
splice site |
probably null |
|
|
R4401:Homer3
|
UTSW |
8 |
70,290,143 (GRCm38) |
splice site |
probably null |
|
|
R4402:Homer3
|
UTSW |
8 |
70,290,143 (GRCm38) |
splice site |
probably null |
|
|
R4445:Homer3
|
UTSW |
8 |
70,290,143 (GRCm38) |
splice site |
probably null |
|
|
R4446:Homer3
|
UTSW |
8 |
70,290,143 (GRCm38) |
splice site |
probably null |
|
|
R4482:Homer3
|
UTSW |
8 |
70,290,143 (GRCm38) |
splice site |
probably null |
|
|
R4488:Homer3
|
UTSW |
8 |
70,290,143 (GRCm38) |
splice site |
probably null |
|
|
R4489:Homer3
|
UTSW |
8 |
70,290,143 (GRCm38) |
splice site |
probably null |
|
|
R4664:Homer3
|
UTSW |
8 |
70,290,143 (GRCm38) |
splice site |
probably null |
|
|
R4666:Homer3
|
UTSW |
8 |
70,290,143 (GRCm38) |
splice site |
probably null |
|
|
R4751:Homer3
|
UTSW |
8 |
70,285,434 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5071:Homer3
|
UTSW |
8 |
70,291,355 (GRCm38) |
missense |
probably benign |
|
|
R5828:Homer3
|
UTSW |
8 |
70,286,306 (GRCm38) |
missense |
probably benign |
0.02 |
|
R6052:Homer3
|
UTSW |
8 |
70,291,426 (GRCm38) |
nonsense |
probably null |
|
|
R6211:Homer3
|
UTSW |
8 |
70,285,524 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6234:Homer3
|
UTSW |
8 |
70,291,165 (GRCm38) |
critical splice donor site |
probably null |
|
|
R6895:Homer3
|
UTSW |
8 |
70,285,305 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R6914:Homer3
|
UTSW |
8 |
70,291,551 (GRCm38) |
missense |
probably benign |
0.00 |
|
R6942:Homer3
|
UTSW |
8 |
70,291,551 (GRCm38) |
missense |
probably benign |
0.00 |
|
R7300:Homer3
|
UTSW |
8 |
70,285,303 (GRCm38) |
start codon destroyed |
probably null |
0.23 |
|
R7391:Homer3
|
UTSW |
8 |
70,289,484 (GRCm38) |
missense |
probably benign |
0.00 |
|
R7553:Homer3
|
UTSW |
8 |
70,290,124 (GRCm38) |
missense |
probably benign |
0.02 |
|
R7555:Homer3
|
UTSW |
8 |
70,289,413 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7721:Homer3
|
UTSW |
8 |
70,291,012 (GRCm38) |
missense |
probably benign |
0.04 |
|
| Predicted Primers |
PCR Primer
(F):5'- TACCCCAGTGGCTTCAATCAAC -3'
(R):5'- TAGTGACAATCAAGACCCTGAC -3'
Sequencing Primer
(F):5'- CCAGTGGCTTCAATCAACTTTAC -3'
(R):5'- AATTTCTGAGTTCGAGGCCAGC -3'
|
| Posted On |
2015-07-06 |
Incidental Mutation